Strain Fitness in Rahnella sp. WP5 around EX31_RS07340

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07335 and EX31_RS07340 are separated by 122 nucleotidesEX31_RS07340 and EX31_RS07345 are separated by 307 nucleotidesEX31_RS07345 and EX31_RS07350 are separated by 91 nucleotides EX31_RS07335: EX31_RS07335 - ribose-phosphate pyrophosphokinase, at 270,029 to 270,976 _RS07335 EX31_RS07340: EX31_RS07340 - stress-induced protein YchH, at 271,099 to 271,377 _RS07340 EX31_RS07345: EX31_RS07345 - aminoacyl-tRNA hydrolase, at 271,685 to 272,260 _RS07345 EX31_RS07350: EX31_RS07350 - cadmium-translocating P-type ATPase, at 272,352 to 274,256 _RS07350 Position (kb) 271 272Strain fitness (log2 ratio) -1 0 1at 270.981 kb on + strandat 271.095 kb on - strandat 271.160 kb on + strand, within EX31_RS07340at 271.160 kb on + strand, within EX31_RS07340at 271.234 kb on - strand, within EX31_RS07340at 271.378 kb on - strandat 271.378 kb on - strandat 271.404 kb on + strandat 271.405 kb on - strandat 271.438 kb on - strandat 271.556 kb on - strandat 271.601 kb on + strandat 271.601 kb on + strandat 271.601 kb on + strandat 271.628 kb on - strandat 271.632 kb on + strandat 272.333 kb on + strandat 272.333 kb on + strandat 272.333 kb on + strandat 272.339 kb on + strandat 272.349 kb on + strandat 272.350 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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270,981 + +0.1
271,095 - -0.2
271,160 + EX31_RS07340 0.22 -1.7
271,160 + EX31_RS07340 0.22 +0.1
271,234 - EX31_RS07340 0.48 -1.1
271,378 - -0.9
271,378 - -0.3
271,404 + -0.2
271,405 - +1.0
271,438 - +1.1
271,556 - +0.3
271,601 + -0.2
271,601 + -0.3
271,601 + -0.0
271,628 - +1.1
271,632 + -0.3
272,333 + -0.1
272,333 + -0.5
272,333 + +1.0
272,339 + +0.1
272,349 + +1.6
272,350 - +0.0

Or see this region's nucleotide sequence