Strain Fitness in Rahnella sp. WP5 around EX31_RS07200

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS07195 and EX31_RS07200 are separated by 441 nucleotidesEX31_RS07200 and EX31_RS07205 are separated by 135 nucleotides EX31_RS07195: EX31_RS07195 - TerC/Alx family metal homeostasis membrane protein, at 236,157 to 237,182 _RS07195 EX31_RS07200: EX31_RS07200 - FNR family transcription factor, at 237,624 to 238,379 _RS07200 EX31_RS07205: EX31_RS07205 - universal stress protein UspE, at 238,515 to 239,474 _RS07205 Position (kb) 237 238 239Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 236.664 kb on + strand, within EX31_RS07195at 236.664 kb on + strand, within EX31_RS07195at 236.664 kb on + strand, within EX31_RS07195at 236.665 kb on - strand, within EX31_RS07195at 236.665 kb on - strand, within EX31_RS07195at 236.681 kb on + strand, within EX31_RS07195at 236.682 kb on - strand, within EX31_RS07195at 236.692 kb on + strand, within EX31_RS07195at 236.693 kb on - strand, within EX31_RS07195at 236.891 kb on + strand, within EX31_RS07195at 236.999 kb on + strand, within EX31_RS07195at 236.999 kb on + strand, within EX31_RS07195at 237.000 kb on - strand, within EX31_RS07195at 237.001 kb on + strand, within EX31_RS07195at 237.002 kb on - strand, within EX31_RS07195at 237.002 kb on - strand, within EX31_RS07195at 237.003 kb on + strand, within EX31_RS07195at 237.003 kb on + strand, within EX31_RS07195at 237.003 kb on + strand, within EX31_RS07195at 237.003 kb on + strand, within EX31_RS07195at 237.003 kb on + strand, within EX31_RS07195at 237.004 kb on - strand, within EX31_RS07195at 237.004 kb on - strand, within EX31_RS07195at 237.004 kb on - strand, within EX31_RS07195at 237.004 kb on - strand, within EX31_RS07195at 237.004 kb on - strand, within EX31_RS07195at 237.043 kb on - strand, within EX31_RS07195at 237.126 kb on + strandat 237.127 kb on - strandat 237.183 kb on + strandat 237.184 kb on - strandat 237.184 kb on - strandat 237.184 kb on - strandat 237.279 kb on + strandat 237.356 kb on + strandat 237.376 kb on + strandat 237.376 kb on + strandat 237.377 kb on - strandat 237.546 kb on + strandat 237.547 kb on - strandat 237.554 kb on + strandat 237.554 kb on + strandat 237.554 kb on + strandat 237.554 kb on + strandat 237.554 kb on + strandat 237.555 kb on - strandat 237.555 kb on - strandat 237.555 kb on - strandat 237.555 kb on - strandat 237.555 kb on - strandat 237.556 kb on + strandat 237.556 kb on + strandat 237.557 kb on - strandat 237.557 kb on - strandat 237.557 kb on - strandat 237.560 kb on + strandat 237.560 kb on + strandat 237.561 kb on - strandat 237.561 kb on - strandat 237.565 kb on - strandat 237.623 kb on + strandat 237.623 kb on + strandat 237.653 kb on + strandat 237.692 kb on + strandat 237.692 kb on + strandat 237.692 kb on + strandat 237.710 kb on + strand, within EX31_RS07200at 237.748 kb on + strand, within EX31_RS07200at 237.800 kb on + strand, within EX31_RS07200at 237.826 kb on + strand, within EX31_RS07200at 237.826 kb on + strand, within EX31_RS07200at 237.826 kb on + strand, within EX31_RS07200at 237.826 kb on + strand, within EX31_RS07200at 237.826 kb on + strand, within EX31_RS07200at 237.826 kb on + strand, within EX31_RS07200at 237.826 kb on + strand, within EX31_RS07200at 237.828 kb on + strand, within EX31_RS07200at 237.828 kb on + strand, within EX31_RS07200at 237.943 kb on + strand, within EX31_RS07200at 237.943 kb on + strand, within EX31_RS07200at 237.943 kb on + strand, within EX31_RS07200at 237.980 kb on + strand, within EX31_RS07200at 237.980 kb on + strand, within EX31_RS07200at 237.980 kb on + strand, within EX31_RS07200at 238.075 kb on + strand, within EX31_RS07200at 238.075 kb on + strand, within EX31_RS07200at 238.075 kb on + strand, within EX31_RS07200at 238.075 kb on + strand, within EX31_RS07200at 238.091 kb on + strand, within EX31_RS07200at 238.091 kb on + strand, within EX31_RS07200at 238.146 kb on + strand, within EX31_RS07200at 238.146 kb on + strand, within EX31_RS07200at 238.226 kb on + strand, within EX31_RS07200at 238.226 kb on + strand, within EX31_RS07200at 238.230 kb on + strand, within EX31_RS07200at 238.230 kb on + strand, within EX31_RS07200at 238.264 kb on + strand, within EX31_RS07200at 238.300 kb on + strand, within EX31_RS07200at 238.300 kb on + strand, within EX31_RS07200at 238.300 kb on + strand, within EX31_RS07200at 238.311 kb on + strandat 238.311 kb on + strandat 238.311 kb on + strandat 238.311 kb on + strandat 238.311 kb on + strandat 238.311 kb on + strandat 238.311 kb on + strandat 238.312 kb on - strandat 238.471 kb on + strandat 238.472 kb on - strandat 238.474 kb on + strandat 238.474 kb on + strandat 238.474 kb on + strandat 238.494 kb on + strandat 238.525 kb on - strandat 238.545 kb on - strandat 238.546 kb on + strandat 238.604 kb on + strandat 238.651 kb on - strand, within EX31_RS07205at 238.749 kb on + strand, within EX31_RS07205at 238.915 kb on + strand, within EX31_RS07205at 238.915 kb on + strand, within EX31_RS07205at 238.948 kb on + strand, within EX31_RS07205at 239.161 kb on + strand, within EX31_RS07205at 239.161 kb on + strand, within EX31_RS07205at 239.161 kb on + strand, within EX31_RS07205at 239.161 kb on + strand, within EX31_RS07205at 239.161 kb on + strand, within EX31_RS07205at 239.161 kb on + strand, within EX31_RS07205at 239.162 kb on - strand, within EX31_RS07205at 239.163 kb on + strand, within EX31_RS07205at 239.163 kb on + strand, within EX31_RS07205at 239.164 kb on - strand, within EX31_RS07205at 239.165 kb on + strand, within EX31_RS07205at 239.165 kb on + strand, within EX31_RS07205at 239.166 kb on - strand, within EX31_RS07205at 239.166 kb on - strand, within EX31_RS07205at 239.166 kb on - strand, within EX31_RS07205at 239.241 kb on - strand, within EX31_RS07205at 239.241 kb on - strand, within EX31_RS07205

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
236,664 + EX31_RS07195 0.49 +0.3
236,664 + EX31_RS07195 0.49 +0.5
236,664 + EX31_RS07195 0.49 +0.3
236,665 - EX31_RS07195 0.50 +2.0
236,665 - EX31_RS07195 0.50 -0.1
236,681 + EX31_RS07195 0.51 -0.5
236,682 - EX31_RS07195 0.51 +0.2
236,692 + EX31_RS07195 0.52 -2.0
236,693 - EX31_RS07195 0.52 +0.9
236,891 + EX31_RS07195 0.72 -1.1
236,999 + EX31_RS07195 0.82 -0.6
236,999 + EX31_RS07195 0.82 -0.7
237,000 - EX31_RS07195 0.82 -0.3
237,001 + EX31_RS07195 0.82 -0.0
237,002 - EX31_RS07195 0.82 +1.2
237,002 - EX31_RS07195 0.82 -1.8
237,003 + EX31_RS07195 0.82 +0.8
237,003 + EX31_RS07195 0.82 +0.1
237,003 + EX31_RS07195 0.82 -0.1
237,003 + EX31_RS07195 0.82 -1.1
237,003 + EX31_RS07195 0.82 +1.6
237,004 - EX31_RS07195 0.83 +0.4
237,004 - EX31_RS07195 0.83 -0.6
237,004 - EX31_RS07195 0.83 +0.1
237,004 - EX31_RS07195 0.83 -1.4
237,004 - EX31_RS07195 0.83 -0.1
237,043 - EX31_RS07195 0.86 -0.1
237,126 + -0.5
237,127 - +0.1
237,183 + +0.7
237,184 - -0.4
237,184 - +1.1
237,184 - +1.2
237,279 + -0.9
237,356 + +0.0
237,376 + +0.4
237,376 + +0.1
237,377 - -0.1
237,546 + +0.4
237,547 - -0.0
237,554 + -1.0
237,554 + +0.4
237,554 + -1.0
237,554 + +1.3
237,554 + +0.1
237,555 - -1.0
237,555 - -0.5
237,555 - -0.5
237,555 - -1.0
237,555 - -2.3
237,556 + -0.5
237,556 + -1.7
237,557 - -1.7
237,557 - +0.5
237,557 - +1.2
237,560 + +0.6
237,560 + -0.3
237,561 - +0.3
237,561 - -0.0
237,565 - -1.5
237,623 + -0.2
237,623 + -1.7
237,653 + -0.6
237,692 + -0.1
237,692 + -1.0
237,692 + -1.5
237,710 + EX31_RS07200 0.11 -1.3
237,748 + EX31_RS07200 0.16 -0.9
237,800 + EX31_RS07200 0.23 -0.7
237,826 + EX31_RS07200 0.27 +0.4
237,826 + EX31_RS07200 0.27 -1.7
237,826 + EX31_RS07200 0.27 +1.3
237,826 + EX31_RS07200 0.27 -2.0
237,826 + EX31_RS07200 0.27 -0.0
237,826 + EX31_RS07200 0.27 -0.5
237,826 + EX31_RS07200 0.27 -2.2
237,828 + EX31_RS07200 0.27 -1.1
237,828 + EX31_RS07200 0.27 +0.4
237,943 + EX31_RS07200 0.42 -1.0
237,943 + EX31_RS07200 0.42 -0.3
237,943 + EX31_RS07200 0.42 -0.3
237,980 + EX31_RS07200 0.47 -0.4
237,980 + EX31_RS07200 0.47 -0.7
237,980 + EX31_RS07200 0.47 -1.0
238,075 + EX31_RS07200 0.60 +0.4
238,075 + EX31_RS07200 0.60 -0.8
238,075 + EX31_RS07200 0.60 -0.3
238,075 + EX31_RS07200 0.60 -3.2
238,091 + EX31_RS07200 0.62 -0.7
238,091 + EX31_RS07200 0.62 -2.7
238,146 + EX31_RS07200 0.69 -1.6
238,146 + EX31_RS07200 0.69 -0.6
238,226 + EX31_RS07200 0.80 -0.5
238,226 + EX31_RS07200 0.80 -1.0
238,230 + EX31_RS07200 0.80 -1.1
238,230 + EX31_RS07200 0.80 +0.2
238,264 + EX31_RS07200 0.85 -0.5
238,300 + EX31_RS07200 0.89 -0.5
238,300 + EX31_RS07200 0.89 -1.3
238,300 + EX31_RS07200 0.89 +0.5
238,311 + -0.3
238,311 + -0.5
238,311 + -1.5
238,311 + -1.1
238,311 + +0.7
238,311 + +0.3
238,311 + -0.0
238,312 - -0.9
238,471 + +0.2
238,472 - +1.7
238,474 + -2.1
238,474 + -0.6
238,474 + -0.8
238,494 + -1.9
238,525 - +0.0
238,545 - -0.1
238,546 + -0.8
238,604 + +0.6
238,651 - EX31_RS07205 0.14 +1.0
238,749 + EX31_RS07205 0.24 -0.7
238,915 + EX31_RS07205 0.42 -1.5
238,915 + EX31_RS07205 0.42 -0.2
238,948 + EX31_RS07205 0.45 -0.3
239,161 + EX31_RS07205 0.67 +0.3
239,161 + EX31_RS07205 0.67 -0.6
239,161 + EX31_RS07205 0.67 +0.5
239,161 + EX31_RS07205 0.67 +1.2
239,161 + EX31_RS07205 0.67 +0.7
239,161 + EX31_RS07205 0.67 -1.7
239,162 - EX31_RS07205 0.67 -0.4
239,163 + EX31_RS07205 0.68 -0.6
239,163 + EX31_RS07205 0.68 -0.1
239,164 - EX31_RS07205 0.68 +0.2
239,165 + EX31_RS07205 0.68 -0.0
239,165 + EX31_RS07205 0.68 +0.3
239,166 - EX31_RS07205 0.68 -2.1
239,166 - EX31_RS07205 0.68 -2.2
239,166 - EX31_RS07205 0.68 +0.0
239,241 - EX31_RS07205 0.76 -1.2
239,241 - EX31_RS07205 0.76 -2.0

Or see this region's nucleotide sequence