Strain Fitness in Rahnella sp. WP5 around EX31_RS06975

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06970 and EX31_RS06975 are separated by 134 nucleotidesEX31_RS06975 and EX31_RS06980 are separated by 162 nucleotidesEX31_RS06980 and EX31_RS06985 overlap by 14 nucleotides EX31_RS06970: EX31_RS06970 - mannose-6-phosphate isomerase, at 182,721 to 183,902 _RS06970 EX31_RS06975: EX31_RS06975 - YdgA family protein, at 184,037 to 185,578 _RS06975 EX31_RS06980: EX31_RS06980 - iron ABC transporter ATP-binding protein FetA, at 185,741 to 186,412 _RS06980 EX31_RS06985: EX31_RS06985 - iron export ABC transporter permease subunit FetB, at 186,399 to 187,172 _RS06985 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1at 183.097 kb on - strand, within EX31_RS06970at 183.302 kb on + strand, within EX31_RS06970at 183.302 kb on + strand, within EX31_RS06970at 183.302 kb on + strand, within EX31_RS06970at 183.378 kb on - strand, within EX31_RS06970at 183.433 kb on + strand, within EX31_RS06970at 183.434 kb on - strand, within EX31_RS06970at 183.434 kb on - strand, within EX31_RS06970at 183.434 kb on - strand, within EX31_RS06970at 183.489 kb on + strand, within EX31_RS06970at 183.562 kb on - strand, within EX31_RS06970at 183.755 kb on + strand, within EX31_RS06970at 183.756 kb on - strand, within EX31_RS06970at 183.965 kb on + strandat 183.966 kb on - strandat 183.979 kb on + strandat 184.036 kb on + strandat 184.036 kb on + strandat 184.036 kb on + strandat 184.071 kb on + strandat 184.132 kb on + strandat 184.132 kb on + strandat 184.132 kb on + strandat 184.535 kb on + strand, within EX31_RS06975at 184.723 kb on + strand, within EX31_RS06975at 184.723 kb on + strand, within EX31_RS06975at 184.810 kb on + strand, within EX31_RS06975at 184.849 kb on + strand, within EX31_RS06975at 184.849 kb on + strand, within EX31_RS06975at 184.871 kb on + strand, within EX31_RS06975at 184.871 kb on + strand, within EX31_RS06975at 184.872 kb on - strand, within EX31_RS06975at 184.872 kb on - strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.979 kb on + strand, within EX31_RS06975at 184.980 kb on - strand, within EX31_RS06975at 184.980 kb on - strand, within EX31_RS06975at 185.146 kb on + strand, within EX31_RS06975at 185.226 kb on + strand, within EX31_RS06975at 185.404 kb on + strand, within EX31_RS06975at 185.404 kb on + strand, within EX31_RS06975at 185.408 kb on - strand, within EX31_RS06975at 185.576 kb on + strandat 185.711 kb on - strandat 185.785 kb on + strandat 185.846 kb on - strand, within EX31_RS06980at 185.882 kb on - strand, within EX31_RS06980at 185.882 kb on - strand, within EX31_RS06980at 185.896 kb on + strand, within EX31_RS06980at 185.896 kb on + strand, within EX31_RS06980at 185.934 kb on - strand, within EX31_RS06980at 185.994 kb on - strand, within EX31_RS06980at 186.015 kb on + strand, within EX31_RS06980at 186.015 kb on + strand, within EX31_RS06980at 186.256 kb on + strand, within EX31_RS06980at 186.410 kb on + strandat 186.411 kb on - strandat 186.413 kb on + strandat 186.413 kb on + strandat 186.413 kb on + strandat 186.413 kb on + strandat 186.532 kb on + strand, within EX31_RS06985

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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183,097 - EX31_RS06970 0.32 +0.3
183,302 + EX31_RS06970 0.49 +0.1
183,302 + EX31_RS06970 0.49 -1.1
183,302 + EX31_RS06970 0.49 -0.0
183,378 - EX31_RS06970 0.56 -0.4
183,433 + EX31_RS06970 0.60 -0.0
183,434 - EX31_RS06970 0.60 +1.5
183,434 - EX31_RS06970 0.60 +0.6
183,434 - EX31_RS06970 0.60 -0.7
183,489 + EX31_RS06970 0.65 -0.4
183,562 - EX31_RS06970 0.71 +0.6
183,755 + EX31_RS06970 0.87 -1.8
183,756 - EX31_RS06970 0.88 +0.5
183,965 + +0.8
183,966 - +0.6
183,979 + -0.1
184,036 + -1.8
184,036 + +0.7
184,036 + -0.6
184,071 + +1.2
184,132 + +0.1
184,132 + -0.6
184,132 + +0.5
184,535 + EX31_RS06975 0.32 -0.2
184,723 + EX31_RS06975 0.44 +0.1
184,723 + EX31_RS06975 0.44 -0.0
184,810 + EX31_RS06975 0.50 -1.4
184,849 + EX31_RS06975 0.53 -1.2
184,849 + EX31_RS06975 0.53 -0.8
184,871 + EX31_RS06975 0.54 -0.1
184,871 + EX31_RS06975 0.54 -0.9
184,872 - EX31_RS06975 0.54 -0.5
184,872 - EX31_RS06975 0.54 -0.1
184,979 + EX31_RS06975 0.61 -0.5
184,979 + EX31_RS06975 0.61 -1.0
184,979 + EX31_RS06975 0.61 +0.1
184,979 + EX31_RS06975 0.61 +0.3
184,979 + EX31_RS06975 0.61 -0.7
184,979 + EX31_RS06975 0.61 +0.2
184,979 + EX31_RS06975 0.61 -1.1
184,979 + EX31_RS06975 0.61 -0.1
184,980 - EX31_RS06975 0.61 -0.5
184,980 - EX31_RS06975 0.61 -1.1
185,146 + EX31_RS06975 0.72 -0.3
185,226 + EX31_RS06975 0.77 -0.5
185,404 + EX31_RS06975 0.89 -0.0
185,404 + EX31_RS06975 0.89 +0.5
185,408 - EX31_RS06975 0.89 -0.8
185,576 + -0.2
185,711 - +1.1
185,785 + -0.3
185,846 - EX31_RS06980 0.16 +0.1
185,882 - EX31_RS06980 0.21 -0.4
185,882 - EX31_RS06980 0.21 -0.1
185,896 + EX31_RS06980 0.23 +0.2
185,896 + EX31_RS06980 0.23 +1.0
185,934 - EX31_RS06980 0.29 +0.8
185,994 - EX31_RS06980 0.38 -0.2
186,015 + EX31_RS06980 0.41 -0.1
186,015 + EX31_RS06980 0.41 -0.4
186,256 + EX31_RS06980 0.77 -0.4
186,410 + +0.6
186,411 - +1.5
186,413 + +0.2
186,413 + +0.7
186,413 + -0.8
186,413 + +0.5
186,532 + EX31_RS06985 0.17 -0.7

Or see this region's nucleotide sequence