Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05235 and EX31_RS05240 are separated by 206 nucleotides EX31_RS05240 and EX31_RS05245 are separated by 65 nucleotides EX31_RS05245 and EX31_RS05250 are separated by 72 nucleotides
EX31_RS05235: EX31_RS05235 - ATPase AAA, at 186,105 to 186,701
_RS05235
EX31_RS05240: EX31_RS05240 - PTS sugar transporter subunit IIA, at 186,908 to 187,351
_RS05240
EX31_RS05245: EX31_RS05245 - PTS sugar transporter subunit IIB, at 187,417 to 187,719
_RS05245
EX31_RS05250: EX31_RS05250 - PTS sugar transporter subunit IIC, at 187,792 to 189,057
_RS05250
Position (kb) 187
188 Strain fitness (log2 ratio) -2
-1
0
1 at 186.421 kb on - strand, within EX31_RS05235 at 186.439 kb on + strand, within EX31_RS05235 at 186.521 kb on - strand, within EX31_RS05235 at 186.545 kb on + strand, within EX31_RS05235 at 186.766 kb on + strand at 186.873 kb on - strand at 186.873 kb on - strand at 186.908 kb on - strand at 187.039 kb on + strand, within EX31_RS05240 at 187.040 kb on - strand, within EX31_RS05240 at 187.040 kb on - strand, within EX31_RS05240 at 187.041 kb on + strand, within EX31_RS05240 at 187.041 kb on + strand, within EX31_RS05240 at 187.041 kb on + strand, within EX31_RS05240 at 187.041 kb on + strand, within EX31_RS05240 at 187.042 kb on - strand, within EX31_RS05240 at 187.042 kb on - strand, within EX31_RS05240 at 187.042 kb on - strand, within EX31_RS05240 at 187.043 kb on + strand, within EX31_RS05240 at 187.043 kb on + strand, within EX31_RS05240 at 187.043 kb on + strand, within EX31_RS05240 at 187.043 kb on + strand, within EX31_RS05240 at 187.043 kb on + strand, within EX31_RS05240 at 187.044 kb on - strand, within EX31_RS05240 at 187.071 kb on - strand, within EX31_RS05240 at 187.071 kb on - strand, within EX31_RS05240 at 187.073 kb on + strand, within EX31_RS05240 at 187.091 kb on - strand, within EX31_RS05240 at 187.199 kb on + strand, within EX31_RS05240 at 187.199 kb on + strand, within EX31_RS05240 at 187.204 kb on + strand, within EX31_RS05240 at 187.204 kb on + strand, within EX31_RS05240 at 187.376 kb on + strand at 187.376 kb on + strand at 187.377 kb on - strand at 187.394 kb on + strand at 187.395 kb on - strand at 187.486 kb on - strand, within EX31_RS05245 at 187.573 kb on - strand, within EX31_RS05245 at 187.576 kb on - strand, within EX31_RS05245 at 187.633 kb on - strand, within EX31_RS05245 at 187.791 kb on + strand at 187.823 kb on + strand at 187.826 kb on + strand at 187.963 kb on - strand, within EX31_RS05250 at 188.043 kb on + strand, within EX31_RS05250 at 188.043 kb on + strand, within EX31_RS05250 at 188.043 kb on + strand, within EX31_RS05250 at 188.088 kb on - strand, within EX31_RS05250 at 188.113 kb on - strand, within EX31_RS05250 at 188.113 kb on - strand, within EX31_RS05250 at 188.146 kb on + strand, within EX31_RS05250 at 188.146 kb on + strand, within EX31_RS05250 at 188.146 kb on + strand, within EX31_RS05250 at 188.147 kb on - strand, within EX31_RS05250 at 188.147 kb on - strand, within EX31_RS05250 at 188.147 kb on - strand, within EX31_RS05250 at 188.147 kb on - strand, within EX31_RS05250 at 188.148 kb on + strand, within EX31_RS05250 at 188.149 kb on - strand, within EX31_RS05250 at 188.206 kb on + strand, within EX31_RS05250 at 188.207 kb on - strand, within EX31_RS05250 at 188.208 kb on + strand, within EX31_RS05250 at 188.208 kb on + strand, within EX31_RS05250 at 188.208 kb on + strand, within EX31_RS05250 at 188.209 kb on - strand, within EX31_RS05250 at 188.209 kb on - strand, within EX31_RS05250 at 188.254 kb on - strand, within EX31_RS05250 at 188.254 kb on - strand, within EX31_RS05250 at 188.328 kb on + strand, within EX31_RS05250 at 188.328 kb on + strand, within EX31_RS05250 at 188.329 kb on - strand, within EX31_RS05250 at 188.359 kb on + strand, within EX31_RS05250 at 188.359 kb on + strand, within EX31_RS05250 at 188.361 kb on + strand, within EX31_RS05250 at 188.362 kb on - strand, within EX31_RS05250 at 188.403 kb on + strand, within EX31_RS05250 at 188.404 kb on - strand, within EX31_RS05250 at 188.404 kb on - strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.554 kb on + strand, within EX31_RS05250 at 188.554 kb on + strand, within EX31_RS05250 at 188.554 kb on + strand, within EX31_RS05250 at 188.554 kb on + strand, within EX31_RS05250 at 188.554 kb on + strand, within EX31_RS05250 at 188.554 kb on + strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.563 kb on + strand, within EX31_RS05250 at 188.563 kb on + strand, within EX31_RS05250 at 188.563 kb on + strand, within EX31_RS05250 at 188.603 kb on - strand, within EX31_RS05250 at 188.603 kb on - strand, within EX31_RS05250
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 186,421 - EX31_RS05235 0.53 -0.8 186,439 + EX31_RS05235 0.56 -0.3 186,521 - EX31_RS05235 0.70 -0.1 186,545 + EX31_RS05235 0.74 -0.6 186,766 + +0.6 186,873 - -0.1 186,873 - -0.6 186,908 - +0.6 187,039 + EX31_RS05240 0.30 +0.8 187,040 - EX31_RS05240 0.30 -1.1 187,040 - EX31_RS05240 0.30 +0.1 187,041 + EX31_RS05240 0.30 +0.2 187,041 + EX31_RS05240 0.30 -0.3 187,041 + EX31_RS05240 0.30 +0.7 187,041 + EX31_RS05240 0.30 +0.7 187,042 - EX31_RS05240 0.30 -0.3 187,042 - EX31_RS05240 0.30 -0.9 187,042 - EX31_RS05240 0.30 -1.3 187,043 + EX31_RS05240 0.30 +0.2 187,043 + EX31_RS05240 0.30 -0.3 187,043 + EX31_RS05240 0.30 -0.4 187,043 + EX31_RS05240 0.30 +0.5 187,043 + EX31_RS05240 0.30 -0.2 187,044 - EX31_RS05240 0.31 -1.3 187,071 - EX31_RS05240 0.37 +0.6 187,071 - EX31_RS05240 0.37 -0.4 187,073 + EX31_RS05240 0.37 -0.0 187,091 - EX31_RS05240 0.41 -0.8 187,199 + EX31_RS05240 0.66 -1.1 187,199 + EX31_RS05240 0.66 -0.5 187,204 + EX31_RS05240 0.67 -0.6 187,204 + EX31_RS05240 0.67 -0.5 187,376 + -0.3 187,376 + +1.4 187,377 - -2.2 187,394 + -0.3 187,395 - -1.6 187,486 - EX31_RS05245 0.23 -0.5 187,573 - EX31_RS05245 0.51 -1.1 187,576 - EX31_RS05245 0.52 -1.4 187,633 - EX31_RS05245 0.71 -1.2 187,791 + -0.4 187,823 + -0.2 187,826 + -0.5 187,963 - EX31_RS05250 0.14 -0.7 188,043 + EX31_RS05250 0.20 +0.1 188,043 + EX31_RS05250 0.20 -0.0 188,043 + EX31_RS05250 0.20 +0.5 188,088 - EX31_RS05250 0.23 -0.9 188,113 - EX31_RS05250 0.25 +0.2 188,113 - EX31_RS05250 0.25 -0.5 188,146 + EX31_RS05250 0.28 -0.4 188,146 + EX31_RS05250 0.28 +0.4 188,146 + EX31_RS05250 0.28 -0.2 188,147 - EX31_RS05250 0.28 -0.2 188,147 - EX31_RS05250 0.28 -0.2 188,147 - EX31_RS05250 0.28 -0.3 188,147 - EX31_RS05250 0.28 -0.2 188,148 + EX31_RS05250 0.28 -0.2 188,149 - EX31_RS05250 0.28 -0.4 188,206 + EX31_RS05250 0.33 -1.0 188,207 - EX31_RS05250 0.33 -0.4 188,208 + EX31_RS05250 0.33 +0.1 188,208 + EX31_RS05250 0.33 +0.2 188,208 + EX31_RS05250 0.33 +0.1 188,209 - EX31_RS05250 0.33 -0.9 188,209 - EX31_RS05250 0.33 -0.0 188,254 - EX31_RS05250 0.36 -0.5 188,254 - EX31_RS05250 0.36 -0.7 188,328 + EX31_RS05250 0.42 -0.1 188,328 + EX31_RS05250 0.42 -1.1 188,329 - EX31_RS05250 0.42 +0.6 188,359 + EX31_RS05250 0.45 +1.0 188,359 + EX31_RS05250 0.45 -0.6 188,361 + EX31_RS05250 0.45 +0.2 188,362 - EX31_RS05250 0.45 +0.4 188,403 + EX31_RS05250 0.48 -0.3 188,404 - EX31_RS05250 0.48 -0.6 188,404 - EX31_RS05250 0.48 +0.3 188,458 + EX31_RS05250 0.53 +1.1 188,458 + EX31_RS05250 0.53 -0.2 188,458 + EX31_RS05250 0.53 +0.7 188,458 + EX31_RS05250 0.53 +0.6 188,458 + EX31_RS05250 0.53 +0.2 188,458 + EX31_RS05250 0.53 -0.2 188,458 + EX31_RS05250 0.53 -0.5 188,458 + EX31_RS05250 0.53 +0.1 188,459 - EX31_RS05250 0.53 -1.6 188,459 - EX31_RS05250 0.53 +0.2 188,459 - EX31_RS05250 0.53 -0.3 188,459 - EX31_RS05250 0.53 +0.1 188,459 - EX31_RS05250 0.53 +0.3 188,459 - EX31_RS05250 0.53 +0.3 188,459 - EX31_RS05250 0.53 -0.0 188,459 - EX31_RS05250 0.53 -0.5 188,459 - EX31_RS05250 0.53 -0.5 188,459 - EX31_RS05250 0.53 +0.1 188,459 - EX31_RS05250 0.53 +0.1 188,459 - EX31_RS05250 0.53 +0.3 188,554 + EX31_RS05250 0.60 -0.6 188,554 + EX31_RS05250 0.60 -1.6 188,554 + EX31_RS05250 0.60 -0.7 188,554 + EX31_RS05250 0.60 -0.4 188,554 + EX31_RS05250 0.60 -0.0 188,554 + EX31_RS05250 0.60 +0.4 188,555 - EX31_RS05250 0.60 +0.5 188,555 - EX31_RS05250 0.60 -1.3 188,555 - EX31_RS05250 0.60 +0.2 188,555 - EX31_RS05250 0.60 -0.3 188,555 - EX31_RS05250 0.60 +0.1 188,555 - EX31_RS05250 0.60 -0.9 188,555 - EX31_RS05250 0.60 -0.2 188,555 - EX31_RS05250 0.60 +1.6 188,555 - EX31_RS05250 0.60 +0.7 188,555 - EX31_RS05250 0.60 -0.2 188,563 + EX31_RS05250 0.61 +0.1 188,563 + EX31_RS05250 0.61 +0.1 188,563 + EX31_RS05250 0.61 -0.4 188,603 - EX31_RS05250 0.64 -0.1 188,603 - EX31_RS05250 0.64 -0.0
Or see this region's nucleotide sequence