Strain Fitness in Rahnella sp. WP5 around EX31_RS05245

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05235 and EX31_RS05240 are separated by 206 nucleotidesEX31_RS05240 and EX31_RS05245 are separated by 65 nucleotidesEX31_RS05245 and EX31_RS05250 are separated by 72 nucleotides EX31_RS05235: EX31_RS05235 - ATPase AAA, at 186,105 to 186,701 _RS05235 EX31_RS05240: EX31_RS05240 - PTS sugar transporter subunit IIA, at 186,908 to 187,351 _RS05240 EX31_RS05245: EX31_RS05245 - PTS sugar transporter subunit IIB, at 187,417 to 187,719 _RS05245 EX31_RS05250: EX31_RS05250 - PTS sugar transporter subunit IIC, at 187,792 to 189,057 _RS05250 Position (kb) 187 188Strain fitness (log2 ratio) -2 -1 0 1at 186.421 kb on - strand, within EX31_RS05235at 186.439 kb on + strand, within EX31_RS05235at 186.521 kb on - strand, within EX31_RS05235at 186.545 kb on + strand, within EX31_RS05235at 186.766 kb on + strandat 186.873 kb on - strandat 186.873 kb on - strandat 186.908 kb on - strandat 187.039 kb on + strand, within EX31_RS05240at 187.040 kb on - strand, within EX31_RS05240at 187.040 kb on - strand, within EX31_RS05240at 187.041 kb on + strand, within EX31_RS05240at 187.041 kb on + strand, within EX31_RS05240at 187.041 kb on + strand, within EX31_RS05240at 187.041 kb on + strand, within EX31_RS05240at 187.042 kb on - strand, within EX31_RS05240at 187.042 kb on - strand, within EX31_RS05240at 187.042 kb on - strand, within EX31_RS05240at 187.043 kb on + strand, within EX31_RS05240at 187.043 kb on + strand, within EX31_RS05240at 187.043 kb on + strand, within EX31_RS05240at 187.043 kb on + strand, within EX31_RS05240at 187.043 kb on + strand, within EX31_RS05240at 187.044 kb on - strand, within EX31_RS05240at 187.071 kb on - strand, within EX31_RS05240at 187.071 kb on - strand, within EX31_RS05240at 187.073 kb on + strand, within EX31_RS05240at 187.091 kb on - strand, within EX31_RS05240at 187.199 kb on + strand, within EX31_RS05240at 187.199 kb on + strand, within EX31_RS05240at 187.204 kb on + strand, within EX31_RS05240at 187.204 kb on + strand, within EX31_RS05240at 187.376 kb on + strandat 187.376 kb on + strandat 187.377 kb on - strandat 187.394 kb on + strandat 187.395 kb on - strandat 187.486 kb on - strand, within EX31_RS05245at 187.573 kb on - strand, within EX31_RS05245at 187.576 kb on - strand, within EX31_RS05245at 187.633 kb on - strand, within EX31_RS05245at 187.791 kb on + strandat 187.823 kb on + strandat 187.826 kb on + strandat 187.963 kb on - strand, within EX31_RS05250at 188.043 kb on + strand, within EX31_RS05250at 188.043 kb on + strand, within EX31_RS05250at 188.043 kb on + strand, within EX31_RS05250at 188.088 kb on - strand, within EX31_RS05250at 188.113 kb on - strand, within EX31_RS05250at 188.113 kb on - strand, within EX31_RS05250at 188.146 kb on + strand, within EX31_RS05250at 188.146 kb on + strand, within EX31_RS05250at 188.146 kb on + strand, within EX31_RS05250at 188.147 kb on - strand, within EX31_RS05250at 188.147 kb on - strand, within EX31_RS05250at 188.147 kb on - strand, within EX31_RS05250at 188.147 kb on - strand, within EX31_RS05250at 188.148 kb on + strand, within EX31_RS05250at 188.149 kb on - strand, within EX31_RS05250at 188.206 kb on + strand, within EX31_RS05250at 188.207 kb on - strand, within EX31_RS05250at 188.208 kb on + strand, within EX31_RS05250at 188.208 kb on + strand, within EX31_RS05250at 188.208 kb on + strand, within EX31_RS05250at 188.209 kb on - strand, within EX31_RS05250at 188.209 kb on - strand, within EX31_RS05250at 188.254 kb on - strand, within EX31_RS05250at 188.254 kb on - strand, within EX31_RS05250at 188.328 kb on + strand, within EX31_RS05250at 188.328 kb on + strand, within EX31_RS05250at 188.329 kb on - strand, within EX31_RS05250at 188.359 kb on + strand, within EX31_RS05250at 188.359 kb on + strand, within EX31_RS05250at 188.361 kb on + strand, within EX31_RS05250at 188.362 kb on - strand, within EX31_RS05250at 188.403 kb on + strand, within EX31_RS05250at 188.404 kb on - strand, within EX31_RS05250at 188.404 kb on - strand, within EX31_RS05250at 188.458 kb on + strand, within EX31_RS05250at 188.458 kb on + strand, within EX31_RS05250at 188.458 kb on + strand, within EX31_RS05250at 188.458 kb on + strand, within EX31_RS05250at 188.458 kb on + strand, within EX31_RS05250at 188.458 kb on + strand, within EX31_RS05250at 188.458 kb on + strand, within EX31_RS05250at 188.458 kb on + strand, within EX31_RS05250at 188.459 kb on - strand, within EX31_RS05250at 188.459 kb on - strand, within EX31_RS05250at 188.459 kb on - strand, within EX31_RS05250at 188.459 kb on - strand, within EX31_RS05250at 188.459 kb on - strand, within EX31_RS05250at 188.459 kb on - strand, within EX31_RS05250at 188.459 kb on - strand, within EX31_RS05250at 188.459 kb on - strand, within EX31_RS05250at 188.459 kb on - strand, within EX31_RS05250at 188.459 kb on - strand, within EX31_RS05250at 188.459 kb on - strand, within EX31_RS05250at 188.459 kb on - strand, within EX31_RS05250at 188.554 kb on + strand, within EX31_RS05250at 188.554 kb on + strand, within EX31_RS05250at 188.554 kb on + strand, within EX31_RS05250at 188.554 kb on + strand, within EX31_RS05250at 188.554 kb on + strand, within EX31_RS05250at 188.554 kb on + strand, within EX31_RS05250at 188.555 kb on - strand, within EX31_RS05250at 188.555 kb on - strand, within EX31_RS05250at 188.555 kb on - strand, within EX31_RS05250at 188.555 kb on - strand, within EX31_RS05250at 188.555 kb on - strand, within EX31_RS05250at 188.555 kb on - strand, within EX31_RS05250at 188.555 kb on - strand, within EX31_RS05250at 188.555 kb on - strand, within EX31_RS05250at 188.555 kb on - strand, within EX31_RS05250at 188.555 kb on - strand, within EX31_RS05250at 188.563 kb on + strand, within EX31_RS05250at 188.563 kb on + strand, within EX31_RS05250at 188.563 kb on + strand, within EX31_RS05250at 188.603 kb on - strand, within EX31_RS05250at 188.603 kb on - strand, within EX31_RS05250

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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186,421 - EX31_RS05235 0.53 -0.8
186,439 + EX31_RS05235 0.56 -0.3
186,521 - EX31_RS05235 0.70 -0.1
186,545 + EX31_RS05235 0.74 -0.6
186,766 + +0.6
186,873 - -0.1
186,873 - -0.6
186,908 - +0.6
187,039 + EX31_RS05240 0.30 +0.8
187,040 - EX31_RS05240 0.30 -1.1
187,040 - EX31_RS05240 0.30 +0.1
187,041 + EX31_RS05240 0.30 +0.2
187,041 + EX31_RS05240 0.30 -0.3
187,041 + EX31_RS05240 0.30 +0.7
187,041 + EX31_RS05240 0.30 +0.7
187,042 - EX31_RS05240 0.30 -0.3
187,042 - EX31_RS05240 0.30 -0.9
187,042 - EX31_RS05240 0.30 -1.3
187,043 + EX31_RS05240 0.30 +0.2
187,043 + EX31_RS05240 0.30 -0.3
187,043 + EX31_RS05240 0.30 -0.4
187,043 + EX31_RS05240 0.30 +0.5
187,043 + EX31_RS05240 0.30 -0.2
187,044 - EX31_RS05240 0.31 -1.3
187,071 - EX31_RS05240 0.37 +0.6
187,071 - EX31_RS05240 0.37 -0.4
187,073 + EX31_RS05240 0.37 -0.0
187,091 - EX31_RS05240 0.41 -0.8
187,199 + EX31_RS05240 0.66 -1.1
187,199 + EX31_RS05240 0.66 -0.5
187,204 + EX31_RS05240 0.67 -0.6
187,204 + EX31_RS05240 0.67 -0.5
187,376 + -0.3
187,376 + +1.4
187,377 - -2.2
187,394 + -0.3
187,395 - -1.6
187,486 - EX31_RS05245 0.23 -0.5
187,573 - EX31_RS05245 0.51 -1.1
187,576 - EX31_RS05245 0.52 -1.4
187,633 - EX31_RS05245 0.71 -1.2
187,791 + -0.4
187,823 + -0.2
187,826 + -0.5
187,963 - EX31_RS05250 0.14 -0.7
188,043 + EX31_RS05250 0.20 +0.1
188,043 + EX31_RS05250 0.20 -0.0
188,043 + EX31_RS05250 0.20 +0.5
188,088 - EX31_RS05250 0.23 -0.9
188,113 - EX31_RS05250 0.25 +0.2
188,113 - EX31_RS05250 0.25 -0.5
188,146 + EX31_RS05250 0.28 -0.4
188,146 + EX31_RS05250 0.28 +0.4
188,146 + EX31_RS05250 0.28 -0.2
188,147 - EX31_RS05250 0.28 -0.2
188,147 - EX31_RS05250 0.28 -0.2
188,147 - EX31_RS05250 0.28 -0.3
188,147 - EX31_RS05250 0.28 -0.2
188,148 + EX31_RS05250 0.28 -0.2
188,149 - EX31_RS05250 0.28 -0.4
188,206 + EX31_RS05250 0.33 -1.0
188,207 - EX31_RS05250 0.33 -0.4
188,208 + EX31_RS05250 0.33 +0.1
188,208 + EX31_RS05250 0.33 +0.2
188,208 + EX31_RS05250 0.33 +0.1
188,209 - EX31_RS05250 0.33 -0.9
188,209 - EX31_RS05250 0.33 -0.0
188,254 - EX31_RS05250 0.36 -0.5
188,254 - EX31_RS05250 0.36 -0.7
188,328 + EX31_RS05250 0.42 -0.1
188,328 + EX31_RS05250 0.42 -1.1
188,329 - EX31_RS05250 0.42 +0.6
188,359 + EX31_RS05250 0.45 +1.0
188,359 + EX31_RS05250 0.45 -0.6
188,361 + EX31_RS05250 0.45 +0.2
188,362 - EX31_RS05250 0.45 +0.4
188,403 + EX31_RS05250 0.48 -0.3
188,404 - EX31_RS05250 0.48 -0.6
188,404 - EX31_RS05250 0.48 +0.3
188,458 + EX31_RS05250 0.53 +1.1
188,458 + EX31_RS05250 0.53 -0.2
188,458 + EX31_RS05250 0.53 +0.7
188,458 + EX31_RS05250 0.53 +0.6
188,458 + EX31_RS05250 0.53 +0.2
188,458 + EX31_RS05250 0.53 -0.2
188,458 + EX31_RS05250 0.53 -0.5
188,458 + EX31_RS05250 0.53 +0.1
188,459 - EX31_RS05250 0.53 -1.6
188,459 - EX31_RS05250 0.53 +0.2
188,459 - EX31_RS05250 0.53 -0.3
188,459 - EX31_RS05250 0.53 +0.1
188,459 - EX31_RS05250 0.53 +0.3
188,459 - EX31_RS05250 0.53 +0.3
188,459 - EX31_RS05250 0.53 -0.0
188,459 - EX31_RS05250 0.53 -0.5
188,459 - EX31_RS05250 0.53 -0.5
188,459 - EX31_RS05250 0.53 +0.1
188,459 - EX31_RS05250 0.53 +0.1
188,459 - EX31_RS05250 0.53 +0.3
188,554 + EX31_RS05250 0.60 -0.6
188,554 + EX31_RS05250 0.60 -1.6
188,554 + EX31_RS05250 0.60 -0.7
188,554 + EX31_RS05250 0.60 -0.4
188,554 + EX31_RS05250 0.60 -0.0
188,554 + EX31_RS05250 0.60 +0.4
188,555 - EX31_RS05250 0.60 +0.5
188,555 - EX31_RS05250 0.60 -1.3
188,555 - EX31_RS05250 0.60 +0.2
188,555 - EX31_RS05250 0.60 -0.3
188,555 - EX31_RS05250 0.60 +0.1
188,555 - EX31_RS05250 0.60 -0.9
188,555 - EX31_RS05250 0.60 -0.2
188,555 - EX31_RS05250 0.60 +1.6
188,555 - EX31_RS05250 0.60 +0.7
188,555 - EX31_RS05250 0.60 -0.2
188,563 + EX31_RS05250 0.61 +0.1
188,563 + EX31_RS05250 0.61 +0.1
188,563 + EX31_RS05250 0.61 -0.4
188,603 - EX31_RS05250 0.64 -0.1
188,603 - EX31_RS05250 0.64 -0.0

Or see this region's nucleotide sequence