Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02750 and EX31_RS02755 are separated by 41 nucleotides EX31_RS02755 and EX31_RS02760 are separated by 1 nucleotides
EX31_RS02750: EX31_RS02750 - glycosyltransferase family 4 protein, at 19,452 to 20,585
_RS02750
EX31_RS02755: EX31_RS02755 - hypothetical protein, at 20,627 to 21,631
_RS02755
EX31_RS02760: EX31_RS02760 - glycosyltransferase, at 21,633 to 22,817
_RS02760
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2 at 19.639 kb on - strand, within EX31_RS02750 at 19.650 kb on + strand, within EX31_RS02750 at 19.650 kb on + strand, within EX31_RS02750 at 19.651 kb on - strand, within EX31_RS02750 at 19.651 kb on - strand, within EX31_RS02750 at 19.671 kb on - strand, within EX31_RS02750 at 19.673 kb on + strand, within EX31_RS02750 at 19.674 kb on - strand, within EX31_RS02750 at 19.683 kb on - strand, within EX31_RS02750 at 19.683 kb on - strand, within EX31_RS02750 at 19.716 kb on + strand, within EX31_RS02750 at 19.717 kb on - strand, within EX31_RS02750 at 19.742 kb on - strand, within EX31_RS02750 at 19.760 kb on + strand, within EX31_RS02750 at 19.760 kb on + strand, within EX31_RS02750 at 19.761 kb on - strand, within EX31_RS02750 at 19.761 kb on - strand, within EX31_RS02750 at 19.761 kb on - strand, within EX31_RS02750 at 19.810 kb on + strand, within EX31_RS02750 at 19.812 kb on + strand, within EX31_RS02750 at 19.812 kb on + strand, within EX31_RS02750 at 19.812 kb on + strand, within EX31_RS02750 at 19.812 kb on + strand, within EX31_RS02750 at 19.812 kb on + strand, within EX31_RS02750 at 19.812 kb on + strand, within EX31_RS02750 at 19.812 kb on + strand, within EX31_RS02750 at 19.813 kb on - strand, within EX31_RS02750 at 19.813 kb on - strand, within EX31_RS02750 at 19.813 kb on - strand, within EX31_RS02750 at 19.813 kb on - strand, within EX31_RS02750 at 19.813 kb on - strand, within EX31_RS02750 at 19.813 kb on - strand, within EX31_RS02750 at 19.817 kb on + strand, within EX31_RS02750 at 19.817 kb on + strand, within EX31_RS02750 at 19.818 kb on - strand, within EX31_RS02750 at 19.818 kb on - strand, within EX31_RS02750 at 19.820 kb on + strand, within EX31_RS02750 at 19.820 kb on + strand, within EX31_RS02750 at 19.820 kb on + strand, within EX31_RS02750 at 19.821 kb on - strand, within EX31_RS02750 at 19.821 kb on - strand, within EX31_RS02750 at 19.821 kb on - strand, within EX31_RS02750 at 19.845 kb on - strand, within EX31_RS02750 at 19.874 kb on + strand, within EX31_RS02750 at 19.929 kb on + strand, within EX31_RS02750 at 19.930 kb on - strand, within EX31_RS02750 at 19.934 kb on + strand, within EX31_RS02750 at 19.935 kb on - strand, within EX31_RS02750 at 19.935 kb on - strand, within EX31_RS02750 at 19.935 kb on - strand, within EX31_RS02750 at 19.952 kb on - strand, within EX31_RS02750 at 19.952 kb on - strand, within EX31_RS02750 at 19.952 kb on - strand, within EX31_RS02750 at 19.952 kb on - strand, within EX31_RS02750 at 19.952 kb on - strand, within EX31_RS02750 at 19.952 kb on - strand, within EX31_RS02750 at 19.973 kb on - strand, within EX31_RS02750 at 20.034 kb on - strand, within EX31_RS02750 at 20.065 kb on - strand, within EX31_RS02750 at 20.075 kb on + strand, within EX31_RS02750 at 20.076 kb on - strand, within EX31_RS02750 at 20.080 kb on - strand, within EX31_RS02750 at 20.080 kb on - strand, within EX31_RS02750 at 20.080 kb on - strand, within EX31_RS02750 at 20.080 kb on - strand, within EX31_RS02750 at 20.080 kb on - strand, within EX31_RS02750 at 20.080 kb on - strand, within EX31_RS02750 at 20.084 kb on - strand, within EX31_RS02750 at 20.109 kb on + strand, within EX31_RS02750 at 20.110 kb on - strand, within EX31_RS02750 at 20.110 kb on - strand, within EX31_RS02750 at 20.140 kb on - strand, within EX31_RS02750 at 20.193 kb on + strand, within EX31_RS02750 at 20.194 kb on - strand, within EX31_RS02750 at 20.252 kb on + strand, within EX31_RS02750 at 20.260 kb on - strand, within EX31_RS02750 at 20.277 kb on - strand, within EX31_RS02750 at 20.282 kb on - strand, within EX31_RS02750 at 20.285 kb on + strand, within EX31_RS02750 at 20.334 kb on + strand, within EX31_RS02750 at 20.335 kb on - strand, within EX31_RS02750 at 20.382 kb on - strand, within EX31_RS02750 at 20.398 kb on - strand, within EX31_RS02750 at 20.417 kb on + strand, within EX31_RS02750 at 20.444 kb on + strand, within EX31_RS02750 at 20.447 kb on - strand, within EX31_RS02750 at 20.469 kb on + strand, within EX31_RS02750 at 20.469 kb on + strand, within EX31_RS02750 at 20.507 kb on + strand at 20.531 kb on - strand at 20.615 kb on - strand at 20.637 kb on - strand at 20.648 kb on + strand at 20.828 kb on - strand, within EX31_RS02755 at 20.852 kb on - strand, within EX31_RS02755 at 20.914 kb on + strand, within EX31_RS02755 at 20.948 kb on - strand, within EX31_RS02755 at 20.960 kb on - strand, within EX31_RS02755 at 20.960 kb on - strand, within EX31_RS02755 at 20.966 kb on - strand, within EX31_RS02755 at 20.968 kb on - strand, within EX31_RS02755 at 20.990 kb on - strand, within EX31_RS02755 at 21.083 kb on - strand, within EX31_RS02755 at 21.083 kb on - strand, within EX31_RS02755 at 21.092 kb on - strand, within EX31_RS02755 at 21.175 kb on - strand, within EX31_RS02755 at 21.221 kb on - strand, within EX31_RS02755 at 21.242 kb on - strand, within EX31_RS02755 at 21.320 kb on - strand, within EX31_RS02755 at 21.357 kb on - strand, within EX31_RS02755 at 21.428 kb on - strand, within EX31_RS02755 at 21.573 kb on - strand at 21.599 kb on + strand at 21.600 kb on - strand at 21.732 kb on - strand at 21.947 kb on - strand, within EX31_RS02760 at 21.947 kb on - strand, within EX31_RS02760 at 22.139 kb on + strand, within EX31_RS02760 at 22.140 kb on - strand, within EX31_RS02760 at 22.140 kb on - strand, within EX31_RS02760 at 22.180 kb on - strand, within EX31_RS02760 at 22.215 kb on - strand, within EX31_RS02760 at 22.237 kb on + strand, within EX31_RS02760 at 22.238 kb on - strand, within EX31_RS02760 at 22.238 kb on - strand, within EX31_RS02760 at 22.266 kb on - strand, within EX31_RS02760 at 22.278 kb on + strand, within EX31_RS02760 at 22.278 kb on + strand, within EX31_RS02760 at 22.279 kb on - strand, within EX31_RS02760 at 22.279 kb on - strand, within EX31_RS02760 at 22.279 kb on - strand, within EX31_RS02760 at 22.328 kb on - strand, within EX31_RS02760 at 22.332 kb on - strand, within EX31_RS02760 at 22.392 kb on + strand, within EX31_RS02760 at 22.393 kb on - strand, within EX31_RS02760 at 22.393 kb on - strand, within EX31_RS02760 at 22.456 kb on + strand, within EX31_RS02760 at 22.463 kb on + strand, within EX31_RS02760 at 22.493 kb on + strand, within EX31_RS02760 at 22.553 kb on + strand, within EX31_RS02760 at 22.553 kb on + strand, within EX31_RS02760 at 22.554 kb on - strand, within EX31_RS02760 at 22.584 kb on + strand, within EX31_RS02760
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 19,639 - EX31_RS02750 0.16 +1.7 19,650 + EX31_RS02750 0.17 +0.0 19,650 + EX31_RS02750 0.17 -0.3 19,651 - EX31_RS02750 0.18 -0.0 19,651 - EX31_RS02750 0.18 -0.2 19,671 - EX31_RS02750 0.19 +0.6 19,673 + EX31_RS02750 0.19 +0.1 19,674 - EX31_RS02750 0.20 -0.8 19,683 - EX31_RS02750 0.20 +1.0 19,683 - EX31_RS02750 0.20 +0.4 19,716 + EX31_RS02750 0.23 -0.2 19,717 - EX31_RS02750 0.23 +0.9 19,742 - EX31_RS02750 0.26 +1.1 19,760 + EX31_RS02750 0.27 -0.5 19,760 + EX31_RS02750 0.27 +0.0 19,761 - EX31_RS02750 0.27 +0.5 19,761 - EX31_RS02750 0.27 +0.2 19,761 - EX31_RS02750 0.27 +1.0 19,810 + EX31_RS02750 0.32 -0.8 19,812 + EX31_RS02750 0.32 +0.4 19,812 + EX31_RS02750 0.32 -0.1 19,812 + EX31_RS02750 0.32 -0.8 19,812 + EX31_RS02750 0.32 -1.6 19,812 + EX31_RS02750 0.32 +1.1 19,812 + EX31_RS02750 0.32 -1.0 19,812 + EX31_RS02750 0.32 -2.3 19,813 - EX31_RS02750 0.32 +0.2 19,813 - EX31_RS02750 0.32 +0.4 19,813 - EX31_RS02750 0.32 +0.3 19,813 - EX31_RS02750 0.32 -1.2 19,813 - EX31_RS02750 0.32 +0.5 19,813 - EX31_RS02750 0.32 +0.2 19,817 + EX31_RS02750 0.32 -0.2 19,817 + EX31_RS02750 0.32 -2.2 19,818 - EX31_RS02750 0.32 -0.4 19,818 - EX31_RS02750 0.32 +0.0 19,820 + EX31_RS02750 0.32 +0.8 19,820 + EX31_RS02750 0.32 +0.5 19,820 + EX31_RS02750 0.32 +2.0 19,821 - EX31_RS02750 0.33 -0.4 19,821 - EX31_RS02750 0.33 -0.7 19,821 - EX31_RS02750 0.33 +0.2 19,845 - EX31_RS02750 0.35 +1.2 19,874 + EX31_RS02750 0.37 +0.2 19,929 + EX31_RS02750 0.42 -0.4 19,930 - EX31_RS02750 0.42 +0.6 19,934 + EX31_RS02750 0.43 +0.1 19,935 - EX31_RS02750 0.43 -0.3 19,935 - EX31_RS02750 0.43 -0.4 19,935 - EX31_RS02750 0.43 +0.5 19,952 - EX31_RS02750 0.44 +0.6 19,952 - EX31_RS02750 0.44 -0.9 19,952 - EX31_RS02750 0.44 +0.3 19,952 - EX31_RS02750 0.44 +1.2 19,952 - EX31_RS02750 0.44 +0.0 19,952 - EX31_RS02750 0.44 -0.1 19,973 - EX31_RS02750 0.46 -0.2 20,034 - EX31_RS02750 0.51 -0.7 20,065 - EX31_RS02750 0.54 +0.3 20,075 + EX31_RS02750 0.55 +0.3 20,076 - EX31_RS02750 0.55 -0.7 20,080 - EX31_RS02750 0.55 +0.4 20,080 - EX31_RS02750 0.55 +0.2 20,080 - EX31_RS02750 0.55 +0.9 20,080 - EX31_RS02750 0.55 -0.3 20,080 - EX31_RS02750 0.55 +0.9 20,080 - EX31_RS02750 0.55 +0.5 20,084 - EX31_RS02750 0.56 -0.3 20,109 + EX31_RS02750 0.58 +0.0 20,110 - EX31_RS02750 0.58 +2.7 20,110 - EX31_RS02750 0.58 -0.9 20,140 - EX31_RS02750 0.61 +1.2 20,193 + EX31_RS02750 0.65 -1.3 20,194 - EX31_RS02750 0.65 +1.5 20,252 + EX31_RS02750 0.71 -1.7 20,260 - EX31_RS02750 0.71 -2.4 20,277 - EX31_RS02750 0.73 -0.1 20,282 - EX31_RS02750 0.73 -0.2 20,285 + EX31_RS02750 0.73 -2.1 20,334 + EX31_RS02750 0.78 +1.1 20,335 - EX31_RS02750 0.78 +0.5 20,382 - EX31_RS02750 0.82 -0.1 20,398 - EX31_RS02750 0.83 -0.9 20,417 + EX31_RS02750 0.85 +0.3 20,444 + EX31_RS02750 0.87 +0.3 20,447 - EX31_RS02750 0.88 +0.5 20,469 + EX31_RS02750 0.90 -1.0 20,469 + EX31_RS02750 0.90 -0.0 20,507 + +0.6 20,531 - -0.3 20,615 - +0.2 20,637 - +1.2 20,648 + -0.4 20,828 - EX31_RS02755 0.20 -0.8 20,852 - EX31_RS02755 0.22 -0.5 20,914 + EX31_RS02755 0.29 -0.8 20,948 - EX31_RS02755 0.32 -0.7 20,960 - EX31_RS02755 0.33 -1.2 20,960 - EX31_RS02755 0.33 -0.6 20,966 - EX31_RS02755 0.34 +1.0 20,968 - EX31_RS02755 0.34 -0.6 20,990 - EX31_RS02755 0.36 -1.0 21,083 - EX31_RS02755 0.45 -1.0 21,083 - EX31_RS02755 0.45 -0.3 21,092 - EX31_RS02755 0.46 -0.3 21,175 - EX31_RS02755 0.55 -0.1 21,221 - EX31_RS02755 0.59 +1.0 21,242 - EX31_RS02755 0.61 -0.6 21,320 - EX31_RS02755 0.69 +0.3 21,357 - EX31_RS02755 0.73 -0.6 21,428 - EX31_RS02755 0.80 -0.3 21,573 - +0.5 21,599 + -1.2 21,600 - +0.6 21,732 - +0.4 21,947 - EX31_RS02760 0.26 -0.6 21,947 - EX31_RS02760 0.26 -2.1 22,139 + EX31_RS02760 0.43 -2.7 22,140 - EX31_RS02760 0.43 -1.1 22,140 - EX31_RS02760 0.43 +0.4 22,180 - EX31_RS02760 0.46 +0.0 22,215 - EX31_RS02760 0.49 -0.3 22,237 + EX31_RS02760 0.51 -2.1 22,238 - EX31_RS02760 0.51 +1.2 22,238 - EX31_RS02760 0.51 -0.4 22,266 - EX31_RS02760 0.53 -1.0 22,278 + EX31_RS02760 0.54 +0.0 22,278 + EX31_RS02760 0.54 -0.6 22,279 - EX31_RS02760 0.55 -1.5 22,279 - EX31_RS02760 0.55 -0.1 22,279 - EX31_RS02760 0.55 -1.9 22,328 - EX31_RS02760 0.59 -1.7 22,332 - EX31_RS02760 0.59 -0.2 22,392 + EX31_RS02760 0.64 -2.2 22,393 - EX31_RS02760 0.64 -1.0 22,393 - EX31_RS02760 0.64 -1.1 22,456 + EX31_RS02760 0.69 +0.7 22,463 + EX31_RS02760 0.70 -0.2 22,493 + EX31_RS02760 0.73 +1.1 22,553 + EX31_RS02760 0.78 -0.3 22,553 + EX31_RS02760 0.78 +0.5 22,554 - EX31_RS02760 0.78 -0.6 22,584 + EX31_RS02760 0.80 -0.6
Or see this region's nucleotide sequence