Strain Fitness in Rahnella sp. WP5 around EX31_RS02755

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02750 and EX31_RS02755 are separated by 41 nucleotidesEX31_RS02755 and EX31_RS02760 are separated by 1 nucleotides EX31_RS02750: EX31_RS02750 - glycosyltransferase family 4 protein, at 19,452 to 20,585 _RS02750 EX31_RS02755: EX31_RS02755 - hypothetical protein, at 20,627 to 21,631 _RS02755 EX31_RS02760: EX31_RS02760 - glycosyltransferase, at 21,633 to 22,817 _RS02760 Position (kb) 20 21 22Strain fitness (log2 ratio) -2 -1 0 1 2at 19.639 kb on - strand, within EX31_RS02750at 19.650 kb on + strand, within EX31_RS02750at 19.650 kb on + strand, within EX31_RS02750at 19.651 kb on - strand, within EX31_RS02750at 19.651 kb on - strand, within EX31_RS02750at 19.671 kb on - strand, within EX31_RS02750at 19.673 kb on + strand, within EX31_RS02750at 19.674 kb on - strand, within EX31_RS02750at 19.683 kb on - strand, within EX31_RS02750at 19.683 kb on - strand, within EX31_RS02750at 19.716 kb on + strand, within EX31_RS02750at 19.717 kb on - strand, within EX31_RS02750at 19.742 kb on - strand, within EX31_RS02750at 19.760 kb on + strand, within EX31_RS02750at 19.760 kb on + strand, within EX31_RS02750at 19.761 kb on - strand, within EX31_RS02750at 19.761 kb on - strand, within EX31_RS02750at 19.761 kb on - strand, within EX31_RS02750at 19.810 kb on + strand, within EX31_RS02750at 19.812 kb on + strand, within EX31_RS02750at 19.812 kb on + strand, within EX31_RS02750at 19.812 kb on + strand, within EX31_RS02750at 19.812 kb on + strand, within EX31_RS02750at 19.812 kb on + strand, within EX31_RS02750at 19.812 kb on + strand, within EX31_RS02750at 19.812 kb on + strand, within EX31_RS02750at 19.813 kb on - strand, within EX31_RS02750at 19.813 kb on - strand, within EX31_RS02750at 19.813 kb on - strand, within EX31_RS02750at 19.813 kb on - strand, within EX31_RS02750at 19.813 kb on - strand, within EX31_RS02750at 19.813 kb on - strand, within EX31_RS02750at 19.817 kb on + strand, within EX31_RS02750at 19.817 kb on + strand, within EX31_RS02750at 19.818 kb on - strand, within EX31_RS02750at 19.818 kb on - strand, within EX31_RS02750at 19.820 kb on + strand, within EX31_RS02750at 19.820 kb on + strand, within EX31_RS02750at 19.820 kb on + strand, within EX31_RS02750at 19.821 kb on - strand, within EX31_RS02750at 19.821 kb on - strand, within EX31_RS02750at 19.821 kb on - strand, within EX31_RS02750at 19.845 kb on - strand, within EX31_RS02750at 19.874 kb on + strand, within EX31_RS02750at 19.929 kb on + strand, within EX31_RS02750at 19.930 kb on - strand, within EX31_RS02750at 19.934 kb on + strand, within EX31_RS02750at 19.935 kb on - strand, within EX31_RS02750at 19.935 kb on - strand, within EX31_RS02750at 19.935 kb on - strand, within EX31_RS02750at 19.952 kb on - strand, within EX31_RS02750at 19.952 kb on - strand, within EX31_RS02750at 19.952 kb on - strand, within EX31_RS02750at 19.952 kb on - strand, within EX31_RS02750at 19.952 kb on - strand, within EX31_RS02750at 19.952 kb on - strand, within EX31_RS02750at 19.973 kb on - strand, within EX31_RS02750at 20.034 kb on - strand, within EX31_RS02750at 20.065 kb on - strand, within EX31_RS02750at 20.075 kb on + strand, within EX31_RS02750at 20.076 kb on - strand, within EX31_RS02750at 20.080 kb on - strand, within EX31_RS02750at 20.080 kb on - strand, within EX31_RS02750at 20.080 kb on - strand, within EX31_RS02750at 20.080 kb on - strand, within EX31_RS02750at 20.080 kb on - strand, within EX31_RS02750at 20.080 kb on - strand, within EX31_RS02750at 20.084 kb on - strand, within EX31_RS02750at 20.109 kb on + strand, within EX31_RS02750at 20.110 kb on - strand, within EX31_RS02750at 20.110 kb on - strand, within EX31_RS02750at 20.140 kb on - strand, within EX31_RS02750at 20.193 kb on + strand, within EX31_RS02750at 20.194 kb on - strand, within EX31_RS02750at 20.252 kb on + strand, within EX31_RS02750at 20.260 kb on - strand, within EX31_RS02750at 20.277 kb on - strand, within EX31_RS02750at 20.282 kb on - strand, within EX31_RS02750at 20.285 kb on + strand, within EX31_RS02750at 20.334 kb on + strand, within EX31_RS02750at 20.335 kb on - strand, within EX31_RS02750at 20.382 kb on - strand, within EX31_RS02750at 20.398 kb on - strand, within EX31_RS02750at 20.417 kb on + strand, within EX31_RS02750at 20.444 kb on + strand, within EX31_RS02750at 20.447 kb on - strand, within EX31_RS02750at 20.469 kb on + strand, within EX31_RS02750at 20.469 kb on + strand, within EX31_RS02750at 20.507 kb on + strandat 20.531 kb on - strandat 20.615 kb on - strandat 20.637 kb on - strandat 20.648 kb on + strandat 20.828 kb on - strand, within EX31_RS02755at 20.852 kb on - strand, within EX31_RS02755at 20.914 kb on + strand, within EX31_RS02755at 20.948 kb on - strand, within EX31_RS02755at 20.960 kb on - strand, within EX31_RS02755at 20.960 kb on - strand, within EX31_RS02755at 20.966 kb on - strand, within EX31_RS02755at 20.968 kb on - strand, within EX31_RS02755at 20.990 kb on - strand, within EX31_RS02755at 21.083 kb on - strand, within EX31_RS02755at 21.083 kb on - strand, within EX31_RS02755at 21.092 kb on - strand, within EX31_RS02755at 21.175 kb on - strand, within EX31_RS02755at 21.221 kb on - strand, within EX31_RS02755at 21.242 kb on - strand, within EX31_RS02755at 21.320 kb on - strand, within EX31_RS02755at 21.357 kb on - strand, within EX31_RS02755at 21.428 kb on - strand, within EX31_RS02755at 21.573 kb on - strandat 21.599 kb on + strandat 21.600 kb on - strandat 21.732 kb on - strandat 21.947 kb on - strand, within EX31_RS02760at 21.947 kb on - strand, within EX31_RS02760at 22.139 kb on + strand, within EX31_RS02760at 22.140 kb on - strand, within EX31_RS02760at 22.140 kb on - strand, within EX31_RS02760at 22.180 kb on - strand, within EX31_RS02760at 22.215 kb on - strand, within EX31_RS02760at 22.237 kb on + strand, within EX31_RS02760at 22.238 kb on - strand, within EX31_RS02760at 22.238 kb on - strand, within EX31_RS02760at 22.266 kb on - strand, within EX31_RS02760at 22.278 kb on + strand, within EX31_RS02760at 22.278 kb on + strand, within EX31_RS02760at 22.279 kb on - strand, within EX31_RS02760at 22.279 kb on - strand, within EX31_RS02760at 22.279 kb on - strand, within EX31_RS02760at 22.328 kb on - strand, within EX31_RS02760at 22.332 kb on - strand, within EX31_RS02760at 22.392 kb on + strand, within EX31_RS02760at 22.393 kb on - strand, within EX31_RS02760at 22.393 kb on - strand, within EX31_RS02760at 22.456 kb on + strand, within EX31_RS02760at 22.463 kb on + strand, within EX31_RS02760at 22.493 kb on + strand, within EX31_RS02760at 22.553 kb on + strand, within EX31_RS02760at 22.553 kb on + strand, within EX31_RS02760at 22.554 kb on - strand, within EX31_RS02760at 22.584 kb on + strand, within EX31_RS02760

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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19,639 - EX31_RS02750 0.16 +1.7
19,650 + EX31_RS02750 0.17 +0.0
19,650 + EX31_RS02750 0.17 -0.3
19,651 - EX31_RS02750 0.18 -0.0
19,651 - EX31_RS02750 0.18 -0.2
19,671 - EX31_RS02750 0.19 +0.6
19,673 + EX31_RS02750 0.19 +0.1
19,674 - EX31_RS02750 0.20 -0.8
19,683 - EX31_RS02750 0.20 +1.0
19,683 - EX31_RS02750 0.20 +0.4
19,716 + EX31_RS02750 0.23 -0.2
19,717 - EX31_RS02750 0.23 +0.9
19,742 - EX31_RS02750 0.26 +1.1
19,760 + EX31_RS02750 0.27 -0.5
19,760 + EX31_RS02750 0.27 +0.0
19,761 - EX31_RS02750 0.27 +0.5
19,761 - EX31_RS02750 0.27 +0.2
19,761 - EX31_RS02750 0.27 +1.0
19,810 + EX31_RS02750 0.32 -0.8
19,812 + EX31_RS02750 0.32 +0.4
19,812 + EX31_RS02750 0.32 -0.1
19,812 + EX31_RS02750 0.32 -0.8
19,812 + EX31_RS02750 0.32 -1.6
19,812 + EX31_RS02750 0.32 +1.1
19,812 + EX31_RS02750 0.32 -1.0
19,812 + EX31_RS02750 0.32 -2.3
19,813 - EX31_RS02750 0.32 +0.2
19,813 - EX31_RS02750 0.32 +0.4
19,813 - EX31_RS02750 0.32 +0.3
19,813 - EX31_RS02750 0.32 -1.2
19,813 - EX31_RS02750 0.32 +0.5
19,813 - EX31_RS02750 0.32 +0.2
19,817 + EX31_RS02750 0.32 -0.2
19,817 + EX31_RS02750 0.32 -2.2
19,818 - EX31_RS02750 0.32 -0.4
19,818 - EX31_RS02750 0.32 +0.0
19,820 + EX31_RS02750 0.32 +0.8
19,820 + EX31_RS02750 0.32 +0.5
19,820 + EX31_RS02750 0.32 +2.0
19,821 - EX31_RS02750 0.33 -0.4
19,821 - EX31_RS02750 0.33 -0.7
19,821 - EX31_RS02750 0.33 +0.2
19,845 - EX31_RS02750 0.35 +1.2
19,874 + EX31_RS02750 0.37 +0.2
19,929 + EX31_RS02750 0.42 -0.4
19,930 - EX31_RS02750 0.42 +0.6
19,934 + EX31_RS02750 0.43 +0.1
19,935 - EX31_RS02750 0.43 -0.3
19,935 - EX31_RS02750 0.43 -0.4
19,935 - EX31_RS02750 0.43 +0.5
19,952 - EX31_RS02750 0.44 +0.6
19,952 - EX31_RS02750 0.44 -0.9
19,952 - EX31_RS02750 0.44 +0.3
19,952 - EX31_RS02750 0.44 +1.2
19,952 - EX31_RS02750 0.44 +0.0
19,952 - EX31_RS02750 0.44 -0.1
19,973 - EX31_RS02750 0.46 -0.2
20,034 - EX31_RS02750 0.51 -0.7
20,065 - EX31_RS02750 0.54 +0.3
20,075 + EX31_RS02750 0.55 +0.3
20,076 - EX31_RS02750 0.55 -0.7
20,080 - EX31_RS02750 0.55 +0.4
20,080 - EX31_RS02750 0.55 +0.2
20,080 - EX31_RS02750 0.55 +0.9
20,080 - EX31_RS02750 0.55 -0.3
20,080 - EX31_RS02750 0.55 +0.9
20,080 - EX31_RS02750 0.55 +0.5
20,084 - EX31_RS02750 0.56 -0.3
20,109 + EX31_RS02750 0.58 +0.0
20,110 - EX31_RS02750 0.58 +2.7
20,110 - EX31_RS02750 0.58 -0.9
20,140 - EX31_RS02750 0.61 +1.2
20,193 + EX31_RS02750 0.65 -1.3
20,194 - EX31_RS02750 0.65 +1.5
20,252 + EX31_RS02750 0.71 -1.7
20,260 - EX31_RS02750 0.71 -2.4
20,277 - EX31_RS02750 0.73 -0.1
20,282 - EX31_RS02750 0.73 -0.2
20,285 + EX31_RS02750 0.73 -2.1
20,334 + EX31_RS02750 0.78 +1.1
20,335 - EX31_RS02750 0.78 +0.5
20,382 - EX31_RS02750 0.82 -0.1
20,398 - EX31_RS02750 0.83 -0.9
20,417 + EX31_RS02750 0.85 +0.3
20,444 + EX31_RS02750 0.87 +0.3
20,447 - EX31_RS02750 0.88 +0.5
20,469 + EX31_RS02750 0.90 -1.0
20,469 + EX31_RS02750 0.90 -0.0
20,507 + +0.6
20,531 - -0.3
20,615 - +0.2
20,637 - +1.2
20,648 + -0.4
20,828 - EX31_RS02755 0.20 -0.8
20,852 - EX31_RS02755 0.22 -0.5
20,914 + EX31_RS02755 0.29 -0.8
20,948 - EX31_RS02755 0.32 -0.7
20,960 - EX31_RS02755 0.33 -1.2
20,960 - EX31_RS02755 0.33 -0.6
20,966 - EX31_RS02755 0.34 +1.0
20,968 - EX31_RS02755 0.34 -0.6
20,990 - EX31_RS02755 0.36 -1.0
21,083 - EX31_RS02755 0.45 -1.0
21,083 - EX31_RS02755 0.45 -0.3
21,092 - EX31_RS02755 0.46 -0.3
21,175 - EX31_RS02755 0.55 -0.1
21,221 - EX31_RS02755 0.59 +1.0
21,242 - EX31_RS02755 0.61 -0.6
21,320 - EX31_RS02755 0.69 +0.3
21,357 - EX31_RS02755 0.73 -0.6
21,428 - EX31_RS02755 0.80 -0.3
21,573 - +0.5
21,599 + -1.2
21,600 - +0.6
21,732 - +0.4
21,947 - EX31_RS02760 0.26 -0.6
21,947 - EX31_RS02760 0.26 -2.1
22,139 + EX31_RS02760 0.43 -2.7
22,140 - EX31_RS02760 0.43 -1.1
22,140 - EX31_RS02760 0.43 +0.4
22,180 - EX31_RS02760 0.46 +0.0
22,215 - EX31_RS02760 0.49 -0.3
22,237 + EX31_RS02760 0.51 -2.1
22,238 - EX31_RS02760 0.51 +1.2
22,238 - EX31_RS02760 0.51 -0.4
22,266 - EX31_RS02760 0.53 -1.0
22,278 + EX31_RS02760 0.54 +0.0
22,278 + EX31_RS02760 0.54 -0.6
22,279 - EX31_RS02760 0.55 -1.5
22,279 - EX31_RS02760 0.55 -0.1
22,279 - EX31_RS02760 0.55 -1.9
22,328 - EX31_RS02760 0.59 -1.7
22,332 - EX31_RS02760 0.59 -0.2
22,392 + EX31_RS02760 0.64 -2.2
22,393 - EX31_RS02760 0.64 -1.0
22,393 - EX31_RS02760 0.64 -1.1
22,456 + EX31_RS02760 0.69 +0.7
22,463 + EX31_RS02760 0.70 -0.2
22,493 + EX31_RS02760 0.73 +1.1
22,553 + EX31_RS02760 0.78 -0.3
22,553 + EX31_RS02760 0.78 +0.5
22,554 - EX31_RS02760 0.78 -0.6
22,584 + EX31_RS02760 0.80 -0.6

Or see this region's nucleotide sequence