Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02355 and EX31_RS02360 are separated by 82 nucleotides EX31_RS02360 and EX31_RS02365 are separated by 158 nucleotides EX31_RS02365 and EX31_RS02370 are separated by 224 nucleotides EX31_RS02370 and EX31_RS02375 are separated by 40 nucleotides EX31_RS02375 and EX31_RS02380 are separated by 62 nucleotides
EX31_RS02355: EX31_RS02355 - tellurite resistance methyltransferase TehB, at 506,277 to 506,876
_RS02355
EX31_RS02360: EX31_RS02360 - CsbD family protein, at 506,959 to 507,231
_RS02360
EX31_RS02365: EX31_RS02365 - hypothetical protein, at 507,390 to 507,587
_RS02365
EX31_RS02370: EX31_RS02370 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 507,812 to 508,042
_RS02370
EX31_RS02375: EX31_RS02375 - type II toxin-antitoxin system RelE/ParE family toxin, at 508,083 to 508,430
_RS02375
EX31_RS02380: EX31_RS02380 - OsmC family protein, at 508,493 to 508,924
_RS02380
Position (kb) 507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 506.517 kb on - strand, within EX31_RS02355 at 506.525 kb on + strand, within EX31_RS02355 at 506.630 kb on + strand, within EX31_RS02355 at 506.669 kb on + strand, within EX31_RS02355 at 506.757 kb on + strand, within EX31_RS02355 at 506.758 kb on - strand, within EX31_RS02355 at 506.758 kb on - strand, within EX31_RS02355 at 506.758 kb on - strand, within EX31_RS02355 at 506.835 kb on + strand at 506.932 kb on + strand at 506.932 kb on + strand at 506.958 kb on + strand at 506.958 kb on + strand at 506.959 kb on - strand at 506.959 kb on - strand at 506.959 kb on - strand at 506.959 kb on - strand at 506.959 kb on - strand at 506.959 kb on - strand at 507.088 kb on - strand, within EX31_RS02360 at 507.106 kb on + strand, within EX31_RS02360 at 507.106 kb on + strand, within EX31_RS02360 at 507.107 kb on - strand, within EX31_RS02360 at 507.107 kb on - strand, within EX31_RS02360 at 507.213 kb on - strand at 507.213 kb on - strand at 507.229 kb on + strand at 507.230 kb on - strand at 507.284 kb on - strand at 507.284 kb on - strand at 507.315 kb on + strand at 507.315 kb on + strand at 507.334 kb on + strand at 507.503 kb on + strand, within EX31_RS02365 at 507.522 kb on + strand, within EX31_RS02365 at 507.621 kb on + strand at 507.631 kb on + strand at 507.631 kb on + strand at 507.632 kb on - strand at 507.632 kb on - strand at 507.632 kb on - strand at 507.632 kb on - strand at 507.635 kb on + strand at 507.635 kb on + strand at 507.635 kb on + strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.636 kb on - strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.646 kb on + strand at 507.647 kb on - strand at 507.647 kb on - strand at 507.775 kb on + strand at 508.037 kb on + strand at 508.082 kb on + strand at 508.100 kb on + strand at 508.116 kb on + strand at 508.116 kb on + strand at 508.129 kb on + strand, within EX31_RS02375 at 508.135 kb on + strand, within EX31_RS02375 at 508.186 kb on + strand, within EX31_RS02375 at 508.204 kb on + strand, within EX31_RS02375 at 508.204 kb on + strand, within EX31_RS02375 at 508.204 kb on + strand, within EX31_RS02375 at 508.207 kb on + strand, within EX31_RS02375 at 508.207 kb on + strand, within EX31_RS02375 at 508.207 kb on + strand, within EX31_RS02375 at 508.207 kb on + strand, within EX31_RS02375 at 508.208 kb on - strand, within EX31_RS02375 at 508.234 kb on + strand, within EX31_RS02375 at 508.304 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.327 kb on + strand, within EX31_RS02375 at 508.328 kb on - strand, within EX31_RS02375 at 508.328 kb on - strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.329 kb on + strand, within EX31_RS02375 at 508.330 kb on - strand, within EX31_RS02375 at 508.330 kb on - strand, within EX31_RS02375 at 508.330 kb on - strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.331 kb on + strand, within EX31_RS02375 at 508.332 kb on - strand, within EX31_RS02375 at 508.332 kb on - strand, within EX31_RS02375 at 508.332 kb on - strand, within EX31_RS02375 at 508.332 kb on - strand, within EX31_RS02375 at 508.335 kb on + strand, within EX31_RS02375 at 508.335 kb on + strand, within EX31_RS02375 at 508.335 kb on + strand, within EX31_RS02375 at 508.335 kb on + strand, within EX31_RS02375 at 508.335 kb on + strand, within EX31_RS02375 at 508.365 kb on + strand, within EX31_RS02375 at 508.365 kb on + strand, within EX31_RS02375 at 508.365 kb on + strand, within EX31_RS02375 at 508.366 kb on - strand, within EX31_RS02375 at 508.509 kb on + strand at 508.510 kb on - strand at 508.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 506,517 - EX31_RS02355 0.40 -1.8 506,525 + EX31_RS02355 0.41 +1.6 506,630 + EX31_RS02355 0.59 -0.5 506,669 + EX31_RS02355 0.65 +0.8 506,757 + EX31_RS02355 0.80 -1.0 506,758 - EX31_RS02355 0.80 -0.1 506,758 - EX31_RS02355 0.80 -0.8 506,758 - EX31_RS02355 0.80 +0.3 506,835 + -0.8 506,932 + +0.8 506,932 + -0.3 506,958 + -0.1 506,958 + -0.7 506,959 - -0.4 506,959 - +1.2 506,959 - -0.0 506,959 - +0.3 506,959 - -0.2 506,959 - +0.5 507,088 - EX31_RS02360 0.47 +0.1 507,106 + EX31_RS02360 0.54 +0.4 507,106 + EX31_RS02360 0.54 -0.2 507,107 - EX31_RS02360 0.54 +0.0 507,107 - EX31_RS02360 0.54 -1.3 507,213 - +0.4 507,213 - +0.2 507,229 + +1.4 507,230 - -1.5 507,284 - -1.8 507,284 - -2.0 507,315 + -0.7 507,315 + +1.2 507,334 + -0.6 507,503 + EX31_RS02365 0.57 -0.6 507,522 + EX31_RS02365 0.67 -0.9 507,621 + +0.8 507,631 + -0.1 507,631 + -0.8 507,632 - -1.0 507,632 - -0.1 507,632 - +0.7 507,632 - -0.1 507,635 + +1.1 507,635 + -1.1 507,635 + +0.2 507,636 - +0.4 507,636 - +0.0 507,636 - +0.4 507,636 - +0.1 507,636 - -0.7 507,636 - -0.4 507,636 - +0.1 507,636 - -1.5 507,636 - -0.2 507,636 - -1.5 507,636 - +0.7 507,636 - -0.8 507,636 - -0.3 507,646 + -0.4 507,646 + +0.7 507,646 + -0.1 507,646 + -0.5 507,646 + +1.0 507,646 + +0.7 507,647 - +1.6 507,647 - +0.3 507,775 + +0.6 508,037 + -0.4 508,082 + -0.3 508,100 + +0.3 508,116 + +0.2 508,116 + +0.6 508,129 + EX31_RS02375 0.13 +0.3 508,135 + EX31_RS02375 0.15 +0.3 508,186 + EX31_RS02375 0.30 +0.3 508,204 + EX31_RS02375 0.35 +1.2 508,204 + EX31_RS02375 0.35 +0.6 508,204 + EX31_RS02375 0.35 +0.4 508,207 + EX31_RS02375 0.36 -0.5 508,207 + EX31_RS02375 0.36 +0.6 508,207 + EX31_RS02375 0.36 +0.1 508,207 + EX31_RS02375 0.36 +0.5 508,208 - EX31_RS02375 0.36 -0.8 508,234 + EX31_RS02375 0.43 -0.4 508,304 + EX31_RS02375 0.64 -0.4 508,327 + EX31_RS02375 0.70 +1.9 508,327 + EX31_RS02375 0.70 +0.2 508,327 + EX31_RS02375 0.70 +0.0 508,327 + EX31_RS02375 0.70 +0.2 508,327 + EX31_RS02375 0.70 +0.4 508,327 + EX31_RS02375 0.70 -1.5 508,327 + EX31_RS02375 0.70 +0.5 508,327 + EX31_RS02375 0.70 +0.3 508,327 + EX31_RS02375 0.70 +0.1 508,327 + EX31_RS02375 0.70 +0.2 508,327 + EX31_RS02375 0.70 +1.1 508,328 - EX31_RS02375 0.70 -1.6 508,328 - EX31_RS02375 0.70 -0.7 508,329 + EX31_RS02375 0.71 +0.3 508,329 + EX31_RS02375 0.71 +1.0 508,329 + EX31_RS02375 0.71 +0.9 508,329 + EX31_RS02375 0.71 +0.3 508,329 + EX31_RS02375 0.71 +0.6 508,329 + EX31_RS02375 0.71 +0.3 508,329 + EX31_RS02375 0.71 +0.6 508,329 + EX31_RS02375 0.71 -0.1 508,329 + EX31_RS02375 0.71 -0.8 508,329 + EX31_RS02375 0.71 +1.2 508,329 + EX31_RS02375 0.71 +0.3 508,329 + EX31_RS02375 0.71 +0.3 508,329 + EX31_RS02375 0.71 -0.2 508,329 + EX31_RS02375 0.71 +0.2 508,329 + EX31_RS02375 0.71 +0.4 508,329 + EX31_RS02375 0.71 -0.7 508,329 + EX31_RS02375 0.71 +0.6 508,329 + EX31_RS02375 0.71 +0.8 508,329 + EX31_RS02375 0.71 +0.9 508,329 + EX31_RS02375 0.71 +0.2 508,329 + EX31_RS02375 0.71 +1.0 508,329 + EX31_RS02375 0.71 +1.2 508,329 + EX31_RS02375 0.71 +0.9 508,329 + EX31_RS02375 0.71 +0.3 508,329 + EX31_RS02375 0.71 -0.4 508,329 + EX31_RS02375 0.71 +0.4 508,329 + EX31_RS02375 0.71 -0.3 508,329 + EX31_RS02375 0.71 +0.1 508,329 + EX31_RS02375 0.71 +0.3 508,329 + EX31_RS02375 0.71 +0.7 508,329 + EX31_RS02375 0.71 +0.4 508,329 + EX31_RS02375 0.71 +1.8 508,330 - EX31_RS02375 0.71 -2.0 508,330 - EX31_RS02375 0.71 -0.5 508,330 - EX31_RS02375 0.71 +0.5 508,331 + EX31_RS02375 0.71 +0.2 508,331 + EX31_RS02375 0.71 +0.0 508,331 + EX31_RS02375 0.71 +0.7 508,331 + EX31_RS02375 0.71 -0.1 508,331 + EX31_RS02375 0.71 +1.0 508,331 + EX31_RS02375 0.71 +0.2 508,331 + EX31_RS02375 0.71 +0.5 508,331 + EX31_RS02375 0.71 -0.2 508,331 + EX31_RS02375 0.71 +0.3 508,331 + EX31_RS02375 0.71 +0.6 508,331 + EX31_RS02375 0.71 +0.1 508,331 + EX31_RS02375 0.71 +0.5 508,331 + EX31_RS02375 0.71 +0.3 508,331 + EX31_RS02375 0.71 +0.4 508,331 + EX31_RS02375 0.71 +0.5 508,331 + EX31_RS02375 0.71 +1.1 508,331 + EX31_RS02375 0.71 +0.7 508,331 + EX31_RS02375 0.71 -0.3 508,332 - EX31_RS02375 0.72 +0.5 508,332 - EX31_RS02375 0.72 +0.8 508,332 - EX31_RS02375 0.72 +0.0 508,332 - EX31_RS02375 0.72 +0.2 508,335 + EX31_RS02375 0.72 +0.5 508,335 + EX31_RS02375 0.72 +0.8 508,335 + EX31_RS02375 0.72 +1.1 508,335 + EX31_RS02375 0.72 +0.2 508,335 + EX31_RS02375 0.72 +0.7 508,365 + EX31_RS02375 0.81 -0.3 508,365 + EX31_RS02375 0.81 +0.3 508,365 + EX31_RS02375 0.81 +0.0 508,366 - EX31_RS02375 0.81 -2.9 508,509 + +0.0 508,510 - +0.1 508,510 - +0.2
Or see this region's nucleotide sequence