Strain Fitness in Rahnella sp. WP5 around EX31_RS02035

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS02030 and EX31_RS02035 overlap by 17 nucleotidesEX31_RS02035 and EX31_RS02040 overlap by 4 nucleotidesEX31_RS02040 and EX31_RS02045 overlap by 4 nucleotides EX31_RS02030: EX31_RS02030 - ATP-binding cassette domain-containing protein, at 445,265 to 446,314 _RS02030 EX31_RS02035: EX31_RS02035 - ABC transporter ATP-binding protein, at 446,298 to 447,275 _RS02035 EX31_RS02040: EX31_RS02040 - ABC transporter permease subunit, at 447,272 to 448,132 _RS02040 EX31_RS02045: EX31_RS02045 - ABC transporter permease, at 448,129 to 449,067 _RS02045 Position (kb) 446 447 448Strain fitness (log2 ratio) -2 -1 0 1at 445.364 kb on - strandat 445.364 kb on - strandat 445.542 kb on + strand, within EX31_RS02030at 445.542 kb on + strand, within EX31_RS02030at 445.543 kb on - strand, within EX31_RS02030at 445.543 kb on - strand, within EX31_RS02030at 445.543 kb on - strand, within EX31_RS02030at 445.543 kb on - strand, within EX31_RS02030at 445.594 kb on + strand, within EX31_RS02030at 445.594 kb on + strand, within EX31_RS02030at 445.595 kb on - strand, within EX31_RS02030at 445.595 kb on - strand, within EX31_RS02030at 445.595 kb on - strand, within EX31_RS02030at 445.595 kb on - strand, within EX31_RS02030at 445.595 kb on - strand, within EX31_RS02030at 445.605 kb on + strand, within EX31_RS02030at 445.605 kb on + strand, within EX31_RS02030at 445.605 kb on + strand, within EX31_RS02030at 445.606 kb on - strand, within EX31_RS02030at 445.606 kb on - strand, within EX31_RS02030at 445.660 kb on + strand, within EX31_RS02030at 445.661 kb on - strand, within EX31_RS02030at 445.664 kb on + strand, within EX31_RS02030at 445.665 kb on - strand, within EX31_RS02030at 445.665 kb on - strand, within EX31_RS02030at 445.713 kb on - strand, within EX31_RS02030at 445.713 kb on - strand, within EX31_RS02030at 446.534 kb on + strand, within EX31_RS02035at 446.537 kb on - strand, within EX31_RS02035at 446.599 kb on + strand, within EX31_RS02035at 446.600 kb on - strand, within EX31_RS02035at 446.652 kb on - strand, within EX31_RS02035at 446.661 kb on - strand, within EX31_RS02035at 446.834 kb on - strand, within EX31_RS02035at 446.834 kb on - strand, within EX31_RS02035at 446.837 kb on + strand, within EX31_RS02035at 446.838 kb on - strand, within EX31_RS02035at 446.838 kb on - strand, within EX31_RS02035at 446.838 kb on - strand, within EX31_RS02035at 447.379 kb on + strand, within EX31_RS02040at 447.380 kb on - strand, within EX31_RS02040at 447.380 kb on - strand, within EX31_RS02040at 447.382 kb on + strand, within EX31_RS02040at 447.383 kb on - strand, within EX31_RS02040at 447.386 kb on - strand, within EX31_RS02040at 447.476 kb on + strand, within EX31_RS02040at 447.476 kb on + strand, within EX31_RS02040at 447.548 kb on + strand, within EX31_RS02040at 447.554 kb on - strand, within EX31_RS02040at 447.554 kb on - strand, within EX31_RS02040at 447.566 kb on - strand, within EX31_RS02040at 447.568 kb on - strand, within EX31_RS02040at 447.642 kb on + strand, within EX31_RS02040at 447.755 kb on + strand, within EX31_RS02040at 447.755 kb on + strand, within EX31_RS02040at 447.756 kb on - strand, within EX31_RS02040at 447.917 kb on - strand, within EX31_RS02040at 448.133 kb on - strandat 448.165 kb on + strandat 448.235 kb on + strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
445,364 - +0.6
445,364 - +0.3
445,542 + EX31_RS02030 0.26 +0.4
445,542 + EX31_RS02030 0.26 +0.5
445,543 - EX31_RS02030 0.26 -0.3
445,543 - EX31_RS02030 0.26 -0.7
445,543 - EX31_RS02030 0.26 +0.5
445,543 - EX31_RS02030 0.26 +0.2
445,594 + EX31_RS02030 0.31 +0.3
445,594 + EX31_RS02030 0.31 +0.5
445,595 - EX31_RS02030 0.31 +0.9
445,595 - EX31_RS02030 0.31 -1.4
445,595 - EX31_RS02030 0.31 +0.0
445,595 - EX31_RS02030 0.31 -1.2
445,595 - EX31_RS02030 0.31 +0.4
445,605 + EX31_RS02030 0.32 +0.5
445,605 + EX31_RS02030 0.32 -0.0
445,605 + EX31_RS02030 0.32 -0.2
445,606 - EX31_RS02030 0.32 -0.9
445,606 - EX31_RS02030 0.32 +0.3
445,660 + EX31_RS02030 0.38 +0.0
445,661 - EX31_RS02030 0.38 +0.5
445,664 + EX31_RS02030 0.38 -1.5
445,665 - EX31_RS02030 0.38 +0.9
445,665 - EX31_RS02030 0.38 +1.0
445,713 - EX31_RS02030 0.43 +0.6
445,713 - EX31_RS02030 0.43 +1.1
446,534 + EX31_RS02035 0.24 -1.1
446,537 - EX31_RS02035 0.24 -0.7
446,599 + EX31_RS02035 0.31 +0.3
446,600 - EX31_RS02035 0.31 -0.4
446,652 - EX31_RS02035 0.36 -0.5
446,661 - EX31_RS02035 0.37 +0.0
446,834 - EX31_RS02035 0.55 +0.9
446,834 - EX31_RS02035 0.55 -1.0
446,837 + EX31_RS02035 0.55 -0.7
446,838 - EX31_RS02035 0.55 -1.7
446,838 - EX31_RS02035 0.55 +0.6
446,838 - EX31_RS02035 0.55 -0.9
447,379 + EX31_RS02040 0.12 -0.4
447,380 - EX31_RS02040 0.13 +0.6
447,380 - EX31_RS02040 0.13 -0.6
447,382 + EX31_RS02040 0.13 +0.4
447,383 - EX31_RS02040 0.13 -0.0
447,386 - EX31_RS02040 0.13 +0.1
447,476 + EX31_RS02040 0.24 +0.4
447,476 + EX31_RS02040 0.24 -0.6
447,548 + EX31_RS02040 0.32 -1.1
447,554 - EX31_RS02040 0.33 +1.0
447,554 - EX31_RS02040 0.33 +0.4
447,566 - EX31_RS02040 0.34 -0.2
447,568 - EX31_RS02040 0.34 +0.3
447,642 + EX31_RS02040 0.43 +0.5
447,755 + EX31_RS02040 0.56 +1.0
447,755 + EX31_RS02040 0.56 +1.0
447,756 - EX31_RS02040 0.56 +0.9
447,917 - EX31_RS02040 0.75 -1.0
448,133 - +0.7
448,165 + -2.3
448,235 + EX31_RS02045 0.11 -0.1
448,236 - EX31_RS02045 0.11 +0.4
448,236 - EX31_RS02045 0.11 -0.0
448,236 - EX31_RS02045 0.11 +0.1
448,236 - EX31_RS02045 0.11 +0.2
448,236 - EX31_RS02045 0.11 +0.0
448,236 - EX31_RS02045 0.11 -0.9
448,236 - EX31_RS02045 0.11 -1.2
448,236 - EX31_RS02045 0.11 +0.6

Or see this region's nucleotide sequence