Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00930 and EX31_RS00935 are separated by 351 nucleotides EX31_RS00935 and EX31_RS00940 are separated by 4 nucleotides EX31_RS00940 and EX31_RS25890 are separated by 47 nucleotides
EX31_RS00930: EX31_RS00930 - glycosyltransferase family 9 protein, at 201,825 to 202,844
_RS00930
EX31_RS00935: EX31_RS00935 - LysR family transcriptional regulator, at 203,196 to 204,167
_RS00935
EX31_RS00940: EX31_RS00940 - manganese efflux pump MntP, at 204,172 to 204,747
_RS00940
EX31_RS25890: EX31_RS25890 - hypothetical protein, at 204,795 to 204,857
_RS25890
Position (kb) 203
204
205 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 202.309 kb on + strand, within EX31_RS00930 at 202.311 kb on + strand, within EX31_RS00930 at 202.312 kb on - strand, within EX31_RS00930 at 202.378 kb on - strand, within EX31_RS00930 at 202.446 kb on - strand, within EX31_RS00930 at 202.466 kb on - strand, within EX31_RS00930 at 202.471 kb on - strand, within EX31_RS00930 at 202.682 kb on + strand, within EX31_RS00930 at 202.906 kb on - strand at 202.980 kb on + strand at 203.085 kb on + strand at 203.174 kb on + strand at 203.174 kb on + strand at 203.174 kb on + strand at 203.174 kb on + strand at 203.174 kb on + strand at 203.175 kb on - strand at 203.180 kb on + strand at 203.230 kb on + strand at 203.283 kb on - strand at 203.585 kb on + strand, within EX31_RS00935 at 203.585 kb on + strand, within EX31_RS00935 at 203.784 kb on + strand, within EX31_RS00935 at 203.798 kb on + strand, within EX31_RS00935 at 203.925 kb on - strand, within EX31_RS00935 at 203.925 kb on - strand, within EX31_RS00935 at 203.929 kb on - strand, within EX31_RS00935 at 203.981 kb on + strand, within EX31_RS00935 at 204.024 kb on + strand, within EX31_RS00935 at 204.024 kb on + strand, within EX31_RS00935 at 204.025 kb on - strand, within EX31_RS00935 at 204.027 kb on + strand, within EX31_RS00935 at 204.028 kb on - strand, within EX31_RS00935 at 204.028 kb on - strand, within EX31_RS00935 at 204.106 kb on + strand at 204.210 kb on + strand at 204.211 kb on - strand at 204.349 kb on - strand, within EX31_RS00940 at 204.349 kb on - strand, within EX31_RS00940 at 204.349 kb on - strand, within EX31_RS00940 at 204.349 kb on - strand, within EX31_RS00940 at 204.471 kb on + strand, within EX31_RS00940 at 204.472 kb on - strand, within EX31_RS00940 at 204.472 kb on - strand, within EX31_RS00940 at 204.555 kb on + strand, within EX31_RS00940 at 204.556 kb on - strand, within EX31_RS00940 at 204.556 kb on - strand, within EX31_RS00940 at 204.601 kb on - strand, within EX31_RS00940 at 204.614 kb on - strand, within EX31_RS00940 at 204.712 kb on - strand at 204.712 kb on - strand at 204.736 kb on - strand at 204.921 kb on - strand at 204.961 kb on + strand at 204.962 kb on - strand at 204.962 kb on - strand at 205.007 kb on + strand at 205.009 kb on + strand at 205.009 kb on + strand at 205.009 kb on + strand at 205.010 kb on - strand at 205.010 kb on - strand at 205.010 kb on - strand at 205.010 kb on - strand at 205.010 kb on - strand at 205.070 kb on - strand at 205.075 kb on + strand at 205.076 kb on - strand at 205.097 kb on - strand at 205.105 kb on - strand at 205.105 kb on - strand at 205.137 kb on - strand at 205.143 kb on + strand at 205.143 kb on + strand at 205.146 kb on + strand at 205.146 kb on + strand at 205.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 202,309 + EX31_RS00930 0.47 -0.5 202,311 + EX31_RS00930 0.48 -1.3 202,312 - EX31_RS00930 0.48 +1.0 202,378 - EX31_RS00930 0.54 -0.8 202,446 - EX31_RS00930 0.61 +0.2 202,466 - EX31_RS00930 0.63 +1.2 202,471 - EX31_RS00930 0.63 -1.7 202,682 + EX31_RS00930 0.84 +1.9 202,906 - +0.6 202,980 + -0.1 203,085 + -1.4 203,174 + +0.1 203,174 + +0.1 203,174 + +1.1 203,174 + -0.0 203,174 + +0.4 203,175 - -0.7 203,180 + -0.1 203,230 + +0.2 203,283 - +1.2 203,585 + EX31_RS00935 0.40 -0.6 203,585 + EX31_RS00935 0.40 -0.3 203,784 + EX31_RS00935 0.60 -0.9 203,798 + EX31_RS00935 0.62 -1.2 203,925 - EX31_RS00935 0.75 -1.0 203,925 - EX31_RS00935 0.75 +0.3 203,929 - EX31_RS00935 0.75 -1.9 203,981 + EX31_RS00935 0.81 -0.8 204,024 + EX31_RS00935 0.85 -0.1 204,024 + EX31_RS00935 0.85 -0.7 204,025 - EX31_RS00935 0.85 -1.0 204,027 + EX31_RS00935 0.85 +0.8 204,028 - EX31_RS00935 0.86 -0.4 204,028 - EX31_RS00935 0.86 -0.9 204,106 + -0.3 204,210 + -0.6 204,211 - -0.1 204,349 - EX31_RS00940 0.31 -2.4 204,349 - EX31_RS00940 0.31 +0.3 204,349 - EX31_RS00940 0.31 -0.5 204,349 - EX31_RS00940 0.31 +0.1 204,471 + EX31_RS00940 0.52 +0.3 204,472 - EX31_RS00940 0.52 +0.7 204,472 - EX31_RS00940 0.52 +0.6 204,555 + EX31_RS00940 0.66 +0.3 204,556 - EX31_RS00940 0.67 -0.2 204,556 - EX31_RS00940 0.67 +1.9 204,601 - EX31_RS00940 0.74 +0.1 204,614 - EX31_RS00940 0.77 -0.3 204,712 - -1.4 204,712 - -1.1 204,736 - -0.1 204,921 - -2.5 204,961 + +1.0 204,962 - +0.2 204,962 - -0.0 205,007 + -1.3 205,009 + -0.6 205,009 + +0.7 205,009 + -0.3 205,010 - +0.2 205,010 - -1.3 205,010 - -1.7 205,010 - +0.0 205,010 - -0.3 205,070 - +0.1 205,075 + -0.4 205,076 - -0.0 205,097 - -0.8 205,105 - -3.7 205,105 - -0.4 205,137 - -0.1 205,143 + +0.0 205,143 + -1.1 205,146 + -0.7 205,146 + -0.4 205,147 - -1.0
Or see this region's nucleotide sequence