Strain Fitness in Rahnella sp. WP5 around EX31_RS25840

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS25840 and EX31_RS16875 are separated by 343 nucleotides EX31_RS25840: EX31_RS25840 - transposase, at 411 to 584 _RS25840 EX31_RS16875: EX31_RS16875 - elongation factor 4, at 928 to 2,721 _RS16875 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.296 kb on - strandat 0.313 kb on + strandat 0.314 kb on - strandat 0.343 kb on + strandat 0.387 kb on + strandat 0.387 kb on + strandat 0.387 kb on + strandat 0.387 kb on + strandat 0.387 kb on + strandat 0.387 kb on + strandat 0.387 kb on + strandat 0.387 kb on + strandat 0.388 kb on - strandat 0.388 kb on - strandat 0.388 kb on - strandat 0.388 kb on - strandat 0.388 kb on - strandat 0.388 kb on - strandat 0.388 kb on - strandat 0.388 kb on - strandat 0.485 kb on - strand, within EX31_RS25840at 0.485 kb on - strand, within EX31_RS25840at 0.485 kb on - strand, within EX31_RS25840at 0.485 kb on - strand, within EX31_RS25840at 0.485 kb on - strand, within EX31_RS25840at 0.485 kb on - strand, within EX31_RS25840at 0.485 kb on - strand, within EX31_RS25840at 0.485 kb on - strand, within EX31_RS25840at 0.485 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.490 kb on - strand, within EX31_RS25840at 0.492 kb on - strand, within EX31_RS25840at 0.492 kb on - strand, within EX31_RS25840at 0.592 kb on + strandat 0.602 kb on + strandat 0.602 kb on + strandat 0.602 kb on + strandat 0.617 kb on + strandat 0.617 kb on + strandat 0.617 kb on + strandat 0.617 kb on + strandat 0.617 kb on + strandat 0.685 kb on + strandat 0.685 kb on + strandat 0.685 kb on + strandat 0.686 kb on - strandat 0.686 kb on - strandat 0.686 kb on - strandat 0.688 kb on + strandat 0.689 kb on - strandat 0.689 kb on - strandat 0.689 kb on - strandat 0.759 kb on + strandat 0.760 kb on - strandat 0.760 kb on - strandat 0.760 kb on - strandat 0.780 kb on + strandat 0.781 kb on - strandat 0.781 kb on - strandat 0.781 kb on - strandat 0.784 kb on + strandat 0.784 kb on + strandat 0.784 kb on + strandat 0.784 kb on + strandat 0.784 kb on + strandat 0.784 kb on + strandat 0.785 kb on - strandat 0.799 kb on + strandat 0.800 kb on - strandat 0.800 kb on - strandat 0.800 kb on - strandat 0.842 kb on + strandat 0.842 kb on + strandat 0.911 kb on + strandat 0.911 kb on + strandat 0.933 kb on + strandat 0.933 kb on + strandat 0.933 kb on + strandat 0.934 kb on - strandat 1.014 kb on - strandat 1.027 kb on - strandat 1.096 kb on - strandat 1.152 kb on + strand, within EX31_RS16875at 1.152 kb on + strand, within EX31_RS16875at 1.152 kb on + strand, within EX31_RS16875at 1.153 kb on - strand, within EX31_RS16875at 1.153 kb on - strand, within EX31_RS16875at 1.164 kb on + strand, within EX31_RS16875at 1.232 kb on + strand, within EX31_RS16875at 1.280 kb on + strand, within EX31_RS16875at 1.280 kb on + strand, within EX31_RS16875at 1.281 kb on - strand, within EX31_RS16875at 1.281 kb on - strand, within EX31_RS16875at 1.281 kb on - strand, within EX31_RS16875at 1.310 kb on + strand, within EX31_RS16875at 1.326 kb on + strand, within EX31_RS16875at 1.326 kb on + strand, within EX31_RS16875at 1.327 kb on - strand, within EX31_RS16875at 1.331 kb on + strand, within EX31_RS16875at 1.331 kb on + strand, within EX31_RS16875at 1.332 kb on - strand, within EX31_RS16875at 1.332 kb on - strand, within EX31_RS16875at 1.332 kb on - strand, within EX31_RS16875at 1.332 kb on - strand, within EX31_RS16875at 1.350 kb on + strand, within EX31_RS16875at 1.350 kb on + strand, within EX31_RS16875at 1.351 kb on - strand, within EX31_RS16875at 1.351 kb on - strand, within EX31_RS16875at 1.351 kb on - strand, within EX31_RS16875at 1.351 kb on - strand, within EX31_RS16875at 1.352 kb on + strand, within EX31_RS16875at 1.352 kb on + strand, within EX31_RS16875at 1.352 kb on + strand, within EX31_RS16875at 1.352 kb on + strand, within EX31_RS16875at 1.352 kb on + strand, within EX31_RS16875at 1.352 kb on + strand, within EX31_RS16875at 1.352 kb on + strand, within EX31_RS16875at 1.352 kb on + strand, within EX31_RS16875at 1.352 kb on + strand, within EX31_RS16875at 1.352 kb on + strand, within EX31_RS16875at 1.352 kb on + strand, within EX31_RS16875at 1.353 kb on - strand, within EX31_RS16875at 1.353 kb on - strand, within EX31_RS16875at 1.353 kb on - strand, within EX31_RS16875at 1.353 kb on - strand, within EX31_RS16875at 1.353 kb on - strand, within EX31_RS16875at 1.353 kb on - strand, within EX31_RS16875at 1.406 kb on + strand, within EX31_RS16875at 1.406 kb on + strand, within EX31_RS16875at 1.406 kb on + strand, within EX31_RS16875at 1.406 kb on + strand, within EX31_RS16875at 1.407 kb on - strand, within EX31_RS16875at 1.407 kb on - strand, within EX31_RS16875at 1.407 kb on - strand, within EX31_RS16875at 1.407 kb on - strand, within EX31_RS16875at 1.407 kb on - strand, within EX31_RS16875at 1.531 kb on + strand, within EX31_RS16875at 1.531 kb on + strand, within EX31_RS16875at 1.531 kb on + strand, within EX31_RS16875at 1.531 kb on + strand, within EX31_RS16875at 1.532 kb on - strand, within EX31_RS16875at 1.532 kb on - strand, within EX31_RS16875at 1.540 kb on + strand, within EX31_RS16875at 1.540 kb on + strand, within EX31_RS16875at 1.540 kb on + strand, within EX31_RS16875at 1.540 kb on + strand, within EX31_RS16875at 1.552 kb on - strand, within EX31_RS16875at 1.556 kb on + strand, within EX31_RS16875at 1.556 kb on + strand, within EX31_RS16875at 1.556 kb on + strand, within EX31_RS16875at 1.556 kb on + strand, within EX31_RS16875at 1.557 kb on - strand, within EX31_RS16875at 1.557 kb on - strand, within EX31_RS16875at 1.557 kb on - strand, within EX31_RS16875at 1.557 kb on - strand, within EX31_RS16875

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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296 - -0.1
313 + -1.0
314 - +0.3
343 + -0.3
387 + -0.7
387 + +0.7
387 + -0.3
387 + -0.6
387 + -0.2
387 + +0.8
387 + +0.8
387 + +0.7
388 - +0.7
388 - -0.2
388 - -0.6
388 - -0.3
388 - -1.6
388 - +0.9
388 - +0.1
388 - +0.7
485 - EX31_RS25840 0.43 -2.8
485 - EX31_RS25840 0.43 -0.7
485 - EX31_RS25840 0.43 -0.5
485 - EX31_RS25840 0.43 -0.1
485 - EX31_RS25840 0.43 +1.7
485 - EX31_RS25840 0.43 -0.0
485 - EX31_RS25840 0.43 -0.8
485 - EX31_RS25840 0.43 -0.8
485 - EX31_RS25840 0.43 -0.5
490 - EX31_RS25840 0.45 -0.7
490 - EX31_RS25840 0.45 -1.8
490 - EX31_RS25840 0.45 -0.8
490 - EX31_RS25840 0.45 +1.9
490 - EX31_RS25840 0.45 -1.1
490 - EX31_RS25840 0.45 -0.2
490 - EX31_RS25840 0.45 -0.8
490 - EX31_RS25840 0.45 -0.4
490 - EX31_RS25840 0.45 -0.8
490 - EX31_RS25840 0.45 +0.2
490 - EX31_RS25840 0.45 +1.3
490 - EX31_RS25840 0.45 -1.7
490 - EX31_RS25840 0.45 -0.5
490 - EX31_RS25840 0.45 -0.7
490 - EX31_RS25840 0.45 +0.1
492 - EX31_RS25840 0.47 +0.1
492 - EX31_RS25840 0.47 -0.1
592 + +0.4
602 + -0.3
602 + -0.9
602 + +0.4
617 + -0.1
617 + -0.1
617 + -1.1
617 + +0.4
617 + -0.5
685 + +0.7
685 + +0.6
685 + +0.2
686 - -0.5
686 - -0.2
686 - +0.8
688 + +2.0
689 - -0.1
689 - +0.6
689 - +0.7
759 + +0.8
760 - -0.0
760 - +0.3
760 - -0.7
780 + +0.0
781 - -0.7
781 - -0.7
781 - -0.2
784 + -0.2
784 + +0.7
784 + -0.4
784 + -0.1
784 + +0.0
784 + -0.4
785 - +0.3
799 + +0.1
800 - -0.0
800 - -2.3
800 - +1.2
842 + -0.1
842 + +0.6
911 + +0.5
911 + +0.2
933 + +0.8
933 + -1.3
933 + +0.3
934 - -1.5
1,014 - +0.3
1,027 - +0.0
1,096 - -0.1
1,152 + EX31_RS16875 0.12 -2.1
1,152 + EX31_RS16875 0.12 +0.0
1,152 + EX31_RS16875 0.12 -0.0
1,153 - EX31_RS16875 0.13 -0.4
1,153 - EX31_RS16875 0.13 -0.3
1,164 + EX31_RS16875 0.13 -0.9
1,232 + EX31_RS16875 0.17 +1.6
1,280 + EX31_RS16875 0.20 -0.5
1,280 + EX31_RS16875 0.20 -0.2
1,281 - EX31_RS16875 0.20 +0.1
1,281 - EX31_RS16875 0.20 -0.1
1,281 - EX31_RS16875 0.20 -1.2
1,310 + EX31_RS16875 0.21 -0.1
1,326 + EX31_RS16875 0.22 +0.5
1,326 + EX31_RS16875 0.22 +0.7
1,327 - EX31_RS16875 0.22 -1.1
1,331 + EX31_RS16875 0.22 -0.8
1,331 + EX31_RS16875 0.22 -0.8
1,332 - EX31_RS16875 0.23 -0.1
1,332 - EX31_RS16875 0.23 -0.1
1,332 - EX31_RS16875 0.23 -0.3
1,332 - EX31_RS16875 0.23 +0.2
1,350 + EX31_RS16875 0.24 +0.4
1,350 + EX31_RS16875 0.24 +1.1
1,351 - EX31_RS16875 0.24 -0.0
1,351 - EX31_RS16875 0.24 +1.3
1,351 - EX31_RS16875 0.24 +0.1
1,351 - EX31_RS16875 0.24 +0.2
1,352 + EX31_RS16875 0.24 +0.3
1,352 + EX31_RS16875 0.24 +0.7
1,352 + EX31_RS16875 0.24 +0.8
1,352 + EX31_RS16875 0.24 -0.3
1,352 + EX31_RS16875 0.24 +0.4
1,352 + EX31_RS16875 0.24 -0.6
1,352 + EX31_RS16875 0.24 +0.5
1,352 + EX31_RS16875 0.24 -0.3
1,352 + EX31_RS16875 0.24 +0.1
1,352 + EX31_RS16875 0.24 +0.7
1,352 + EX31_RS16875 0.24 +1.1
1,353 - EX31_RS16875 0.24 -0.0
1,353 - EX31_RS16875 0.24 -0.4
1,353 - EX31_RS16875 0.24 +0.0
1,353 - EX31_RS16875 0.24 +0.0
1,353 - EX31_RS16875 0.24 +0.1
1,353 - EX31_RS16875 0.24 -0.0
1,406 + EX31_RS16875 0.27 -0.2
1,406 + EX31_RS16875 0.27 +0.5
1,406 + EX31_RS16875 0.27 -0.1
1,406 + EX31_RS16875 0.27 -0.4
1,407 - EX31_RS16875 0.27 +0.1
1,407 - EX31_RS16875 0.27 -1.8
1,407 - EX31_RS16875 0.27 +1.0
1,407 - EX31_RS16875 0.27 +0.4
1,407 - EX31_RS16875 0.27 +0.9
1,531 + EX31_RS16875 0.34 +0.4
1,531 + EX31_RS16875 0.34 +0.9
1,531 + EX31_RS16875 0.34 -3.2
1,531 + EX31_RS16875 0.34 -0.9
1,532 - EX31_RS16875 0.34 -0.7
1,532 - EX31_RS16875 0.34 -0.9
1,540 + EX31_RS16875 0.34 +0.0
1,540 + EX31_RS16875 0.34 +0.4
1,540 + EX31_RS16875 0.34 +1.6
1,540 + EX31_RS16875 0.34 +0.5
1,552 - EX31_RS16875 0.35 -0.3
1,556 + EX31_RS16875 0.35 -0.9
1,556 + EX31_RS16875 0.35 +0.4
1,556 + EX31_RS16875 0.35 -0.7
1,556 + EX31_RS16875 0.35 +0.1
1,557 - EX31_RS16875 0.35 -1.8
1,557 - EX31_RS16875 0.35 -0.8
1,557 - EX31_RS16875 0.35 -0.9
1,557 - EX31_RS16875 0.35 +0.4

Or see this region's nucleotide sequence