Strain Fitness in Rahnella sp. WP5 around EX31_RS25615

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21715 and EX31_RS25615 are separated by 275 nucleotidesEX31_RS25615 and EX31_RS21720 are separated by 417 nucleotidesEX31_RS21720 and EX31_RS21725 overlap by 4 nucleotides EX31_RS21715: EX31_RS21715 - glycoside hydrolase, at 86,342 to 89,224 _RS21715 EX31_RS25615: EX31_RS25615 - AlpA family phage regulatory protein, at 89,500 to 89,638 _RS25615 EX31_RS21720: EX31_RS21720 - DUF2892 domain-containing protein, at 90,056 to 90,586 _RS21720 EX31_RS21725: EX31_RS21725 - helix-turn-helix transcriptional regulator, at 90,583 to 90,900 _RS21725 Position (kb) 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 88.537 kb on + strand, within EX31_RS21715at 88.538 kb on - strand, within EX31_RS21715at 88.561 kb on + strand, within EX31_RS21715at 88.561 kb on + strand, within EX31_RS21715at 88.562 kb on - strand, within EX31_RS21715at 88.562 kb on - strand, within EX31_RS21715at 88.647 kb on + strand, within EX31_RS21715at 88.647 kb on + strand, within EX31_RS21715at 88.648 kb on - strand, within EX31_RS21715at 88.648 kb on - strand, within EX31_RS21715at 88.648 kb on - strand, within EX31_RS21715at 88.648 kb on - strand, within EX31_RS21715at 88.648 kb on - strand, within EX31_RS21715at 88.651 kb on + strand, within EX31_RS21715at 88.651 kb on + strand, within EX31_RS21715at 88.651 kb on + strand, within EX31_RS21715at 88.651 kb on + strand, within EX31_RS21715at 88.652 kb on - strand, within EX31_RS21715at 88.652 kb on - strand, within EX31_RS21715at 88.652 kb on - strand, within EX31_RS21715at 88.652 kb on - strand, within EX31_RS21715at 88.652 kb on - strand, within EX31_RS21715at 88.652 kb on - strand, within EX31_RS21715at 88.652 kb on - strand, within EX31_RS21715at 88.652 kb on - strand, within EX31_RS21715at 88.652 kb on - strand, within EX31_RS21715at 88.652 kb on - strand, within EX31_RS21715at 88.652 kb on - strand, within EX31_RS21715at 88.652 kb on - strand, within EX31_RS21715at 88.699 kb on + strand, within EX31_RS21715at 88.699 kb on + strand, within EX31_RS21715at 88.699 kb on + strand, within EX31_RS21715at 88.699 kb on + strand, within EX31_RS21715at 88.700 kb on - strand, within EX31_RS21715at 88.700 kb on - strand, within EX31_RS21715at 88.700 kb on - strand, within EX31_RS21715at 88.700 kb on - strand, within EX31_RS21715at 88.700 kb on - strand, within EX31_RS21715at 88.700 kb on - strand, within EX31_RS21715at 88.700 kb on - strand, within EX31_RS21715at 88.700 kb on - strand, within EX31_RS21715at 88.710 kb on + strand, within EX31_RS21715at 88.731 kb on + strand, within EX31_RS21715at 88.732 kb on - strand, within EX31_RS21715at 88.732 kb on - strand, within EX31_RS21715at 88.732 kb on - strand, within EX31_RS21715at 88.732 kb on - strand, within EX31_RS21715at 88.744 kb on + strand, within EX31_RS21715at 88.744 kb on + strand, within EX31_RS21715at 88.745 kb on - strand, within EX31_RS21715at 88.745 kb on - strand, within EX31_RS21715at 88.757 kb on + strand, within EX31_RS21715at 88.757 kb on + strand, within EX31_RS21715at 88.758 kb on - strand, within EX31_RS21715at 88.758 kb on - strand, within EX31_RS21715at 88.806 kb on + strand, within EX31_RS21715at 88.830 kb on + strand, within EX31_RS21715at 88.886 kb on - strand, within EX31_RS21715at 88.920 kb on + strand, within EX31_RS21715at 88.954 kb on + strandat 88.955 kb on - strandat 88.956 kb on + strandat 88.956 kb on + strandat 88.957 kb on - strandat 88.957 kb on - strandat 88.957 kb on - strandat 88.957 kb on - strandat 88.957 kb on - strandat 88.957 kb on - strandat 88.975 kb on - strandat 88.975 kb on - strandat 88.975 kb on - strandat 88.975 kb on - strandat 88.987 kb on + strandat 88.988 kb on - strandat 88.988 kb on - strandat 88.988 kb on - strandat 88.991 kb on - strandat 89.022 kb on - strandat 89.061 kb on + strandat 89.061 kb on + strandat 89.061 kb on + strandat 89.062 kb on - strandat 89.062 kb on - strandat 89.062 kb on - strandat 89.062 kb on - strandat 89.128 kb on + strandat 89.212 kb on + strandat 89.562 kb on + strand, within EX31_RS25615at 89.627 kb on - strandat 89.627 kb on - strandat 89.643 kb on + strandat 89.787 kb on - strandat 89.815 kb on + strandat 89.815 kb on + strandat 89.817 kb on + strandat 89.817 kb on + strandat 89.817 kb on + strandat 90.033 kb on - strandat 90.044 kb on + strandat 90.045 kb on - strandat 90.045 kb on - strandat 90.058 kb on - strandat 90.065 kb on - strandat 90.065 kb on - strandat 90.120 kb on - strand, within EX31_RS21720at 90.120 kb on - strand, within EX31_RS21720at 90.120 kb on - strand, within EX31_RS21720at 90.120 kb on - strand, within EX31_RS21720at 90.120 kb on - strand, within EX31_RS21720at 90.161 kb on + strand, within EX31_RS21720at 90.162 kb on - strand, within EX31_RS21720at 90.179 kb on + strand, within EX31_RS21720at 90.186 kb on + strand, within EX31_RS21720at 90.187 kb on - strand, within EX31_RS21720at 90.212 kb on - strand, within EX31_RS21720at 90.212 kb on - strand, within EX31_RS21720at 90.215 kb on + strand, within EX31_RS21720at 90.216 kb on - strand, within EX31_RS21720at 90.216 kb on - strand, within EX31_RS21720at 90.216 kb on - strand, within EX31_RS21720at 90.258 kb on + strand, within EX31_RS21720at 90.258 kb on + strand, within EX31_RS21720at 90.258 kb on + strand, within EX31_RS21720at 90.259 kb on - strand, within EX31_RS21720at 90.304 kb on + strand, within EX31_RS21720at 90.323 kb on + strand, within EX31_RS21720at 90.323 kb on + strand, within EX31_RS21720at 90.323 kb on + strand, within EX31_RS21720at 90.417 kb on - strand, within EX31_RS21720at 90.452 kb on - strand, within EX31_RS21720at 90.472 kb on + strand, within EX31_RS21720at 90.473 kb on - strand, within EX31_RS21720at 90.570 kb on - strandat 90.570 kb on - strandat 90.570 kb on - strandat 90.570 kb on - strandat 90.570 kb on - strandat 90.605 kb on + strandat 90.606 kb on - strandat 90.606 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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88,537 + EX31_RS21715 0.76 -0.7
88,538 - EX31_RS21715 0.76 -0.1
88,561 + EX31_RS21715 0.77 -0.8
88,561 + EX31_RS21715 0.77 +0.4
88,562 - EX31_RS21715 0.77 +0.5
88,562 - EX31_RS21715 0.77 +0.3
88,647 + EX31_RS21715 0.80 +0.7
88,647 + EX31_RS21715 0.80 +0.5
88,648 - EX31_RS21715 0.80 -0.0
88,648 - EX31_RS21715 0.80 +0.2
88,648 - EX31_RS21715 0.80 -0.0
88,648 - EX31_RS21715 0.80 -0.3
88,648 - EX31_RS21715 0.80 +0.5
88,651 + EX31_RS21715 0.80 +0.5
88,651 + EX31_RS21715 0.80 -0.3
88,651 + EX31_RS21715 0.80 +0.3
88,651 + EX31_RS21715 0.80 -1.4
88,652 - EX31_RS21715 0.80 +0.2
88,652 - EX31_RS21715 0.80 +0.1
88,652 - EX31_RS21715 0.80 +0.1
88,652 - EX31_RS21715 0.80 +0.1
88,652 - EX31_RS21715 0.80 +0.7
88,652 - EX31_RS21715 0.80 -0.3
88,652 - EX31_RS21715 0.80 -0.2
88,652 - EX31_RS21715 0.80 -0.2
88,652 - EX31_RS21715 0.80 -0.3
88,652 - EX31_RS21715 0.80 +0.2
88,652 - EX31_RS21715 0.80 +0.4
88,652 - EX31_RS21715 0.80 -0.1
88,699 + EX31_RS21715 0.82 -0.1
88,699 + EX31_RS21715 0.82 +0.1
88,699 + EX31_RS21715 0.82 +0.7
88,699 + EX31_RS21715 0.82 -0.9
88,700 - EX31_RS21715 0.82 -1.8
88,700 - EX31_RS21715 0.82 +0.8
88,700 - EX31_RS21715 0.82 -3.4
88,700 - EX31_RS21715 0.82 -0.7
88,700 - EX31_RS21715 0.82 -1.7
88,700 - EX31_RS21715 0.82 -0.3
88,700 - EX31_RS21715 0.82 -0.1
88,700 - EX31_RS21715 0.82 -0.5
88,710 + EX31_RS21715 0.82 -0.2
88,731 + EX31_RS21715 0.83 -0.5
88,732 - EX31_RS21715 0.83 +0.5
88,732 - EX31_RS21715 0.83 -0.0
88,732 - EX31_RS21715 0.83 +0.2
88,732 - EX31_RS21715 0.83 +0.7
88,744 + EX31_RS21715 0.83 +0.6
88,744 + EX31_RS21715 0.83 -0.2
88,745 - EX31_RS21715 0.83 +1.0
88,745 - EX31_RS21715 0.83 +0.5
88,757 + EX31_RS21715 0.84 +0.1
88,757 + EX31_RS21715 0.84 -0.7
88,758 - EX31_RS21715 0.84 -0.0
88,758 - EX31_RS21715 0.84 -1.0
88,806 + EX31_RS21715 0.85 +0.4
88,830 + EX31_RS21715 0.86 -0.6
88,886 - EX31_RS21715 0.88 -0.9
88,920 + EX31_RS21715 0.89 +0.5
88,954 + -0.3
88,955 - +0.5
88,956 + -2.5
88,956 + -0.1
88,957 - +0.2
88,957 - -0.3
88,957 - +0.3
88,957 - +0.6
88,957 - +0.9
88,957 - -0.0
88,975 - +0.2
88,975 - -0.1
88,975 - +0.3
88,975 - +0.4
88,987 + -0.4
88,988 - -0.1
88,988 - -0.7
88,988 - +0.7
88,991 - +0.7
89,022 - +0.4
89,061 + -1.1
89,061 + -2.1
89,061 + -0.4
89,062 - -0.3
89,062 - -0.4
89,062 - -0.5
89,062 - -0.1
89,128 + -2.6
89,212 + -2.3
89,562 + EX31_RS25615 0.45 -0.9
89,627 - +0.0
89,627 - -2.4
89,643 + -1.2
89,787 - +0.1
89,815 + -2.5
89,815 + +0.2
89,817 + +0.3
89,817 + -1.2
89,817 + +0.6
90,033 - +0.6
90,044 + -2.2
90,045 - -1.2
90,045 - -0.0
90,058 - +0.1
90,065 - -2.3
90,065 - -0.5
90,120 - EX31_RS21720 0.12 -1.2
90,120 - EX31_RS21720 0.12 -0.6
90,120 - EX31_RS21720 0.12 +0.2
90,120 - EX31_RS21720 0.12 -1.0
90,120 - EX31_RS21720 0.12 -0.1
90,161 + EX31_RS21720 0.20 -0.4
90,162 - EX31_RS21720 0.20 -0.3
90,179 + EX31_RS21720 0.23 -1.4
90,186 + EX31_RS21720 0.24 -2.1
90,187 - EX31_RS21720 0.25 -0.8
90,212 - EX31_RS21720 0.29 -1.0
90,212 - EX31_RS21720 0.29 +0.6
90,215 + EX31_RS21720 0.30 -1.3
90,216 - EX31_RS21720 0.30 +1.2
90,216 - EX31_RS21720 0.30 -1.6
90,216 - EX31_RS21720 0.30 -0.6
90,258 + EX31_RS21720 0.38 -0.2
90,258 + EX31_RS21720 0.38 +0.1
90,258 + EX31_RS21720 0.38 +0.3
90,259 - EX31_RS21720 0.38 -0.9
90,304 + EX31_RS21720 0.47 +0.5
90,323 + EX31_RS21720 0.50 -0.1
90,323 + EX31_RS21720 0.50 -0.1
90,323 + EX31_RS21720 0.50 -0.3
90,417 - EX31_RS21720 0.68 -0.8
90,452 - EX31_RS21720 0.75 -0.8
90,472 + EX31_RS21720 0.78 +0.8
90,473 - EX31_RS21720 0.79 -1.0
90,570 - -0.8
90,570 - +0.4
90,570 - -0.2
90,570 - -1.6
90,570 - +0.2
90,605 + +2.3
90,606 - -0.5
90,606 - +0.2

Or see this region's nucleotide sequence