Strain Fitness in Rahnella sp. WP5 around EX31_RS23165

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23155 and EX31_RS23160 are separated by 59 nucleotidesEX31_RS23160 and EX31_RS23165 overlap by 4 nucleotidesEX31_RS23165 and EX31_RS23170 are separated by 2 nucleotidesEX31_RS23170 and EX31_RS23175 are separated by 189 nucleotides EX31_RS23155: EX31_RS23155 - zinc ribbon-containing protein, at 393,769 to 394,269 _RS23155 EX31_RS23160: EX31_RS23160 - amino acid ABC transporter ATP-binding protein, at 394,329 to 395,054 _RS23160 EX31_RS23165: EX31_RS23165 - glutamate/aspartate ABC transporter permease GltK, at 395,051 to 395,728 _RS23165 EX31_RS23170: EX31_RS23170 - amino acid ABC transporter permease, at 395,731 to 396,471 _RS23170 EX31_RS23175: EX31_RS23175 - amino acid ABC transporter substrate-binding protein, at 396,661 to 397,557 _RS23175 Position (kb) 395 396Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 394.062 kb on + strand, within EX31_RS23155at 394.126 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.196 kb on - strand, within EX31_RS23155at 394.197 kb on + strand, within EX31_RS23155at 394.197 kb on + strand, within EX31_RS23155at 394.197 kb on + strand, within EX31_RS23155at 394.197 kb on + strand, within EX31_RS23155at 394.215 kb on + strand, within EX31_RS23155at 394.379 kb on + strandat 394.398 kb on - strandat 394.411 kb on - strand, within EX31_RS23160at 394.496 kb on + strand, within EX31_RS23160at 394.497 kb on - strand, within EX31_RS23160at 394.520 kb on + strand, within EX31_RS23160at 394.521 kb on - strand, within EX31_RS23160at 394.599 kb on - strand, within EX31_RS23160at 394.599 kb on - strand, within EX31_RS23160at 394.983 kb on - strandat 395.024 kb on - strandat 395.107 kb on + strandat 395.108 kb on - strandat 395.115 kb on + strandat 395.115 kb on + strandat 395.116 kb on - strandat 395.116 kb on - strandat 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.120 kb on - strand, within EX31_RS23165at 395.120 kb on - strand, within EX31_RS23165at 395.120 kb on - strand, within EX31_RS23165at 395.120 kb on - strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.211 kb on + strand, within EX31_RS23165at 395.211 kb on + strand, within EX31_RS23165at 395.212 kb on - strand, within EX31_RS23165at 395.212 kb on - strand, within EX31_RS23165at 395.212 kb on - strand, within EX31_RS23165at 395.212 kb on - strand, within EX31_RS23165at 395.235 kb on - strand, within EX31_RS23165at 395.369 kb on - strand, within EX31_RS23165at 395.395 kb on - strand, within EX31_RS23165at 395.397 kb on + strand, within EX31_RS23165at 395.397 kb on + strand, within EX31_RS23165at 395.503 kb on - strand, within EX31_RS23165at 395.553 kb on + strand, within EX31_RS23165at 395.553 kb on + strand, within EX31_RS23165at 395.553 kb on + strand, within EX31_RS23165at 395.553 kb on + strand, within EX31_RS23165at 395.554 kb on - strand, within EX31_RS23165at 395.554 kb on - strand, within EX31_RS23165at 395.651 kb on - strand, within EX31_RS23165at 395.651 kb on - strand, within EX31_RS23165at 395.651 kb on - strand, within EX31_RS23165at 395.663 kb on - strandat 395.685 kb on + strandat 395.685 kb on + strandat 395.704 kb on + strandat 395.704 kb on + strandat 395.704 kb on + strandat 395.704 kb on + strandat 395.704 kb on + strandat 395.704 kb on + strandat 395.705 kb on - strandat 395.705 kb on - strandat 395.705 kb on - strandat 395.705 kb on - strandat 395.705 kb on - strandat 395.732 kb on + strandat 395.732 kb on + strandat 395.732 kb on + strandat 395.732 kb on + strandat 395.732 kb on + strandat 395.733 kb on - strandat 395.733 kb on - strandat 395.733 kb on - strandat 395.766 kb on + strandat 395.766 kb on + strandat 395.766 kb on + strandat 395.766 kb on + strandat 395.767 kb on - strandat 395.767 kb on - strandat 395.773 kb on + strandat 395.774 kb on - strandat 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.816 kb on + strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.817 kb on - strand, within EX31_RS23170at 395.874 kb on + strand, within EX31_RS23170at 395.978 kb on + strand, within EX31_RS23170at 395.999 kb on + strand, within EX31_RS23170at 396.000 kb on - strand, within EX31_RS23170at 396.006 kb on - strand, within EX31_RS23170at 396.022 kb on - strand, within EX31_RS23170at 396.022 kb on - strand, within EX31_RS23170at 396.148 kb on + strand, within EX31_RS23170at 396.148 kb on + strand, within EX31_RS23170at 396.148 kb on + strand, within EX31_RS23170at 396.149 kb on - strand, within EX31_RS23170at 396.149 kb on - strand, within EX31_RS23170at 396.218 kb on + strand, within EX31_RS23170at 396.241 kb on + strand, within EX31_RS23170at 396.241 kb on + strand, within EX31_RS23170at 396.241 kb on + strand, within EX31_RS23170at 396.269 kb on + strand, within EX31_RS23170at 396.270 kb on - strand, within EX31_RS23170at 396.410 kb on + strandat 396.411 kb on - strandat 396.411 kb on - strandat 396.463 kb on + strandat 396.463 kb on + strandat 396.463 kb on + strandat 396.464 kb on - strandat 396.464 kb on - strandat 396.464 kb on - strandat 396.500 kb on - strandat 396.578 kb on + strandat 396.578 kb on + strandat 396.579 kb on - strandat 396.579 kb on - strandat 396.608 kb on - strandat 396.612 kb on + strandat 396.640 kb on + strandat 396.640 kb on + strandat 396.640 kb on + strandat 396.641 kb on - strandat 396.641 kb on - strandat 396.641 kb on - strandat 396.641 kb on - strandat 396.663 kb on - strandat 396.673 kb on - strandat 396.727 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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394,062 + EX31_RS23155 0.58 +0.5
394,126 + EX31_RS23155 0.71 +0.6
394,195 + EX31_RS23155 0.85 +0.7
394,195 + EX31_RS23155 0.85 +0.0
394,195 + EX31_RS23155 0.85 -2.1
394,195 + EX31_RS23155 0.85 -0.7
394,195 + EX31_RS23155 0.85 -0.6
394,195 + EX31_RS23155 0.85 -0.0
394,195 + EX31_RS23155 0.85 +0.1
394,196 - EX31_RS23155 0.85 -2.8
394,197 + EX31_RS23155 0.85 -0.0
394,197 + EX31_RS23155 0.85 -0.8
394,197 + EX31_RS23155 0.85 +0.4
394,197 + EX31_RS23155 0.85 +0.1
394,215 + EX31_RS23155 0.89 +0.8
394,379 + +0.4
394,398 - -0.2
394,411 - EX31_RS23160 0.11 -1.2
394,496 + EX31_RS23160 0.23 -0.8
394,497 - EX31_RS23160 0.23 -0.5
394,520 + EX31_RS23160 0.26 +1.5
394,521 - EX31_RS23160 0.26 -0.2
394,599 - EX31_RS23160 0.37 -0.5
394,599 - EX31_RS23160 0.37 +0.5
394,983 - -1.0
395,024 - +0.7
395,107 + -0.3
395,108 - +0.5
395,115 + -0.0
395,115 + -0.1
395,116 - -0.1
395,116 - -0.2
395,119 + EX31_RS23165 0.10 -0.4
395,119 + EX31_RS23165 0.10 +0.4
395,119 + EX31_RS23165 0.10 +0.2
395,119 + EX31_RS23165 0.10 +1.2
395,119 + EX31_RS23165 0.10 +0.6
395,119 + EX31_RS23165 0.10 -0.1
395,119 + EX31_RS23165 0.10 +0.3
395,119 + EX31_RS23165 0.10 +0.1
395,119 + EX31_RS23165 0.10 +1.8
395,120 - EX31_RS23165 0.10 +1.0
395,120 - EX31_RS23165 0.10 -0.3
395,120 - EX31_RS23165 0.10 +0.4
395,120 - EX31_RS23165 0.10 -1.1
395,173 + EX31_RS23165 0.18 -0.8
395,173 + EX31_RS23165 0.18 -0.5
395,173 + EX31_RS23165 0.18 +1.0
395,173 + EX31_RS23165 0.18 +1.1
395,173 + EX31_RS23165 0.18 +0.7
395,174 - EX31_RS23165 0.18 +0.2
395,174 - EX31_RS23165 0.18 +0.2
395,174 - EX31_RS23165 0.18 +0.3
395,174 - EX31_RS23165 0.18 -0.1
395,174 - EX31_RS23165 0.18 -0.3
395,174 - EX31_RS23165 0.18 +0.1
395,211 + EX31_RS23165 0.24 +0.1
395,211 + EX31_RS23165 0.24 -1.0
395,212 - EX31_RS23165 0.24 +0.6
395,212 - EX31_RS23165 0.24 -0.3
395,212 - EX31_RS23165 0.24 -1.2
395,212 - EX31_RS23165 0.24 -1.4
395,235 - EX31_RS23165 0.27 +2.4
395,369 - EX31_RS23165 0.47 -0.0
395,395 - EX31_RS23165 0.51 +0.1
395,397 + EX31_RS23165 0.51 -0.6
395,397 + EX31_RS23165 0.51 -0.6
395,503 - EX31_RS23165 0.67 -0.6
395,553 + EX31_RS23165 0.74 -1.1
395,553 + EX31_RS23165 0.74 -1.4
395,553 + EX31_RS23165 0.74 -0.7
395,553 + EX31_RS23165 0.74 -0.5
395,554 - EX31_RS23165 0.74 -2.4
395,554 - EX31_RS23165 0.74 -0.1
395,651 - EX31_RS23165 0.88 -1.0
395,651 - EX31_RS23165 0.88 -0.3
395,651 - EX31_RS23165 0.88 -1.0
395,663 - +0.5
395,685 + -0.3
395,685 + +1.1
395,704 + -0.3
395,704 + -0.3
395,704 + -0.9
395,704 + -0.4
395,704 + -1.2
395,704 + +0.3
395,705 - +0.2
395,705 - -0.2
395,705 - +0.7
395,705 - -1.3
395,705 - +0.5
395,732 + -0.2
395,732 + +0.7
395,732 + -0.8
395,732 + +0.2
395,732 + +1.0
395,733 - -0.6
395,733 - -0.4
395,733 - +0.4
395,766 + -0.0
395,766 + -0.2
395,766 + +0.8
395,766 + -0.8
395,767 - +0.1
395,767 - +0.3
395,773 + -0.9
395,774 - +1.5
395,816 + EX31_RS23170 0.11 +0.4
395,816 + EX31_RS23170 0.11 +0.7
395,816 + EX31_RS23170 0.11 -1.2
395,816 + EX31_RS23170 0.11 -1.1
395,816 + EX31_RS23170 0.11 +0.4
395,816 + EX31_RS23170 0.11 -0.8
395,816 + EX31_RS23170 0.11 -0.2
395,816 + EX31_RS23170 0.11 -1.1
395,816 + EX31_RS23170 0.11 -0.4
395,816 + EX31_RS23170 0.11 +0.6
395,816 + EX31_RS23170 0.11 -0.9
395,816 + EX31_RS23170 0.11 +0.3
395,816 + EX31_RS23170 0.11 -0.0
395,816 + EX31_RS23170 0.11 +0.5
395,816 + EX31_RS23170 0.11 -1.4
395,816 + EX31_RS23170 0.11 -0.1
395,817 - EX31_RS23170 0.12 +0.3
395,817 - EX31_RS23170 0.12 +0.8
395,817 - EX31_RS23170 0.12 +0.8
395,817 - EX31_RS23170 0.12 +1.0
395,817 - EX31_RS23170 0.12 +1.0
395,817 - EX31_RS23170 0.12 +0.4
395,817 - EX31_RS23170 0.12 +0.2
395,817 - EX31_RS23170 0.12 -2.0
395,874 + EX31_RS23170 0.19 -0.7
395,978 + EX31_RS23170 0.33 +0.2
395,999 + EX31_RS23170 0.36 -2.4
396,000 - EX31_RS23170 0.36 -0.0
396,006 - EX31_RS23170 0.37 -2.3
396,022 - EX31_RS23170 0.39 +1.1
396,022 - EX31_RS23170 0.39 -0.5
396,148 + EX31_RS23170 0.56 +0.2
396,148 + EX31_RS23170 0.56 +0.6
396,148 + EX31_RS23170 0.56 -0.5
396,149 - EX31_RS23170 0.56 +0.3
396,149 - EX31_RS23170 0.56 +0.5
396,218 + EX31_RS23170 0.66 -1.0
396,241 + EX31_RS23170 0.69 +0.6
396,241 + EX31_RS23170 0.69 -0.5
396,241 + EX31_RS23170 0.69 +0.3
396,269 + EX31_RS23170 0.73 -0.2
396,270 - EX31_RS23170 0.73 -0.4
396,410 + -0.7
396,411 - -0.6
396,411 - -0.3
396,463 + +0.2
396,463 + +0.2
396,463 + -0.4
396,464 - -1.5
396,464 - -0.5
396,464 - -0.1
396,500 - -0.4
396,578 + +1.1
396,578 + +0.1
396,579 - +0.9
396,579 - +1.2
396,608 - -0.2
396,612 + +0.2
396,640 + +2.4
396,640 + +0.5
396,640 + -0.6
396,641 - +0.3
396,641 - -0.5
396,641 - +0.1
396,641 - -1.1
396,663 - +0.3
396,673 - +0.5
396,727 - -0.4

Or see this region's nucleotide sequence