Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22255 and EX31_RS22260 are separated by 216 nucleotides EX31_RS22260 and EX31_RS22265 are separated by 164 nucleotides EX31_RS22265 and EX31_RS22270 are separated by 139 nucleotides EX31_RS22270 and EX31_RS22275 are separated by 118 nucleotides
EX31_RS22255: EX31_RS22255 - endopeptidase La, at 201,297 to 203,651
_RS22255
EX31_RS22260: EX31_RS22260 - DNA-binding protein HU-beta, at 203,868 to 204,143
_RS22260
EX31_RS22265: EX31_RS22265 - peptidylprolyl isomerase, at 204,308 to 206,188
_RS22265
EX31_RS22270: EX31_RS22270 - competence protein ComEA, at 206,328 to 206,711
_RS22270
EX31_RS22275: EX31_RS22275 - YbgC/FadM family acyl-CoA thioesterase, at 206,830 to 207,231
_RS22275
Position (kb) 204
205
206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 203.351 kb on + strand, within EX31_RS22255 at 203.351 kb on + strand, within EX31_RS22255 at 203.622 kb on + strand at 203.663 kb on + strand at 203.663 kb on + strand at 203.664 kb on - strand at 203.733 kb on + strand at 203.733 kb on + strand at 203.734 kb on - strand at 203.795 kb on + strand at 203.795 kb on + strand at 203.795 kb on + strand at 203.795 kb on + strand at 203.795 kb on + strand at 203.795 kb on + strand at 203.795 kb on + strand at 203.796 kb on - strand at 203.796 kb on - strand at 203.797 kb on + strand at 203.850 kb on + strand at 203.863 kb on + strand at 203.863 kb on + strand at 203.863 kb on + strand at 203.864 kb on - strand at 203.864 kb on - strand at 203.873 kb on + strand at 203.873 kb on + strand at 203.873 kb on + strand at 203.873 kb on + strand at 203.873 kb on + strand at 203.874 kb on - strand at 203.941 kb on + strand, within EX31_RS22260 at 203.941 kb on + strand, within EX31_RS22260 at 203.941 kb on + strand, within EX31_RS22260 at 203.941 kb on + strand, within EX31_RS22260 at 203.942 kb on - strand, within EX31_RS22260 at 203.992 kb on + strand, within EX31_RS22260 at 203.992 kb on + strand, within EX31_RS22260 at 204.041 kb on + strand, within EX31_RS22260 at 204.042 kb on - strand, within EX31_RS22260 at 204.113 kb on + strand, within EX31_RS22260 at 204.113 kb on + strand, within EX31_RS22260 at 204.113 kb on + strand, within EX31_RS22260 at 204.114 kb on - strand, within EX31_RS22260 at 204.145 kb on + strand at 204.220 kb on - strand at 204.246 kb on + strand at 204.246 kb on + strand at 204.246 kb on + strand at 204.246 kb on + strand at 204.246 kb on + strand at 204.246 kb on + strand at 204.246 kb on + strand at 204.246 kb on + strand at 204.247 kb on - strand at 204.251 kb on + strand at 204.251 kb on + strand at 204.251 kb on + strand at 204.251 kb on + strand at 204.251 kb on + strand at 204.251 kb on + strand at 204.307 kb on + strand at 204.308 kb on - strand at 204.308 kb on - strand at 204.321 kb on + strand at 204.370 kb on + strand at 204.382 kb on + strand at 204.382 kb on + strand at 204.404 kb on + strand at 204.404 kb on + strand at 204.404 kb on + strand at 204.404 kb on + strand at 204.405 kb on - strand at 204.428 kb on + strand at 204.428 kb on + strand at 204.456 kb on + strand at 204.556 kb on + strand, within EX31_RS22265 at 204.556 kb on + strand, within EX31_RS22265 at 204.556 kb on + strand, within EX31_RS22265 at 204.618 kb on - strand, within EX31_RS22265 at 204.715 kb on + strand, within EX31_RS22265 at 204.715 kb on + strand, within EX31_RS22265 at 204.715 kb on + strand, within EX31_RS22265 at 204.715 kb on + strand, within EX31_RS22265 at 204.719 kb on + strand, within EX31_RS22265 at 204.720 kb on - strand, within EX31_RS22265 at 204.746 kb on + strand, within EX31_RS22265 at 204.746 kb on + strand, within EX31_RS22265 at 204.746 kb on + strand, within EX31_RS22265 at 204.786 kb on + strand, within EX31_RS22265 at 204.786 kb on + strand, within EX31_RS22265 at 204.786 kb on + strand, within EX31_RS22265 at 204.847 kb on + strand, within EX31_RS22265 at 204.855 kb on + strand, within EX31_RS22265 at 204.856 kb on - strand, within EX31_RS22265 at 204.922 kb on + strand, within EX31_RS22265 at 204.959 kb on + strand, within EX31_RS22265 at 204.959 kb on + strand, within EX31_RS22265 at 205.011 kb on - strand, within EX31_RS22265 at 205.076 kb on + strand, within EX31_RS22265 at 205.079 kb on + strand, within EX31_RS22265 at 205.079 kb on + strand, within EX31_RS22265 at 205.079 kb on + strand, within EX31_RS22265 at 205.090 kb on + strand, within EX31_RS22265 at 205.124 kb on + strand, within EX31_RS22265 at 205.210 kb on + strand, within EX31_RS22265 at 205.339 kb on + strand, within EX31_RS22265 at 205.339 kb on + strand, within EX31_RS22265 at 205.405 kb on - strand, within EX31_RS22265 at 205.463 kb on + strand, within EX31_RS22265 at 205.463 kb on + strand, within EX31_RS22265 at 205.463 kb on + strand, within EX31_RS22265 at 205.463 kb on + strand, within EX31_RS22265 at 205.466 kb on + strand, within EX31_RS22265 at 205.466 kb on + strand, within EX31_RS22265 at 205.466 kb on + strand, within EX31_RS22265 at 205.558 kb on + strand, within EX31_RS22265 at 205.558 kb on + strand, within EX31_RS22265 at 205.558 kb on + strand, within EX31_RS22265 at 205.558 kb on + strand, within EX31_RS22265 at 205.558 kb on + strand, within EX31_RS22265 at 205.559 kb on - strand, within EX31_RS22265 at 205.614 kb on + strand, within EX31_RS22265 at 205.666 kb on + strand, within EX31_RS22265 at 205.678 kb on + strand, within EX31_RS22265 at 205.678 kb on + strand, within EX31_RS22265 at 205.678 kb on + strand, within EX31_RS22265 at 205.678 kb on + strand, within EX31_RS22265 at 205.678 kb on + strand, within EX31_RS22265 at 205.678 kb on + strand, within EX31_RS22265 at 205.707 kb on + strand, within EX31_RS22265 at 205.814 kb on - strand, within EX31_RS22265 at 205.908 kb on + strand, within EX31_RS22265 at 205.908 kb on + strand, within EX31_RS22265 at 206.068 kb on + strand at 206.068 kb on + strand at 206.162 kb on + strand at 206.186 kb on + strand at 206.322 kb on + strand at 206.323 kb on - strand at 206.608 kb on - strand, within EX31_RS22270 at 206.630 kb on + strand, within EX31_RS22270 at 206.687 kb on + strand at 206.688 kb on - strand at 206.688 kb on - strand at 206.688 kb on - strand at 206.793 kb on + strand at 206.793 kb on + strand at 206.794 kb on - strand at 206.794 kb on - strand at 206.829 kb on + strand at 206.830 kb on - strand at 206.835 kb on + strand at 206.835 kb on + strand at 206.836 kb on - strand at 206.836 kb on - strand at 206.836 kb on - strand at 206.836 kb on - strand at 206.845 kb on - strand at 206.882 kb on + strand, within EX31_RS22275 at 206.882 kb on + strand, within EX31_RS22275 at 206.883 kb on - strand, within EX31_RS22275 at 206.883 kb on - strand, within EX31_RS22275 at 206.994 kb on + strand, within EX31_RS22275 at 206.995 kb on - strand, within EX31_RS22275 at 207.008 kb on - strand, within EX31_RS22275 at 207.024 kb on - strand, within EX31_RS22275
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 203,351 + EX31_RS22255 0.87 -0.5 203,351 + EX31_RS22255 0.87 +0.3 203,622 + -0.0 203,663 + +0.7 203,663 + +0.6 203,664 - -0.3 203,733 + -0.2 203,733 + +0.7 203,734 - +0.9 203,795 + -0.4 203,795 + +0.6 203,795 + +0.0 203,795 + -1.8 203,795 + +0.2 203,795 + +0.5 203,795 + +0.2 203,796 - -1.9 203,796 - -0.3 203,797 + +0.7 203,850 + +0.8 203,863 + -0.2 203,863 + +0.1 203,863 + +0.2 203,864 - -1.2 203,864 - -0.7 203,873 + +0.9 203,873 + +1.1 203,873 + +0.4 203,873 + +0.3 203,873 + -1.5 203,874 - +0.2 203,941 + EX31_RS22260 0.26 -0.4 203,941 + EX31_RS22260 0.26 -0.1 203,941 + EX31_RS22260 0.26 -0.7 203,941 + EX31_RS22260 0.26 +1.4 203,942 - EX31_RS22260 0.27 +0.5 203,992 + EX31_RS22260 0.45 +0.2 203,992 + EX31_RS22260 0.45 -0.2 204,041 + EX31_RS22260 0.63 -0.1 204,042 - EX31_RS22260 0.63 -1.1 204,113 + EX31_RS22260 0.89 -1.6 204,113 + EX31_RS22260 0.89 +0.2 204,113 + EX31_RS22260 0.89 +0.1 204,114 - EX31_RS22260 0.89 +0.5 204,145 + +0.2 204,220 - -0.8 204,246 + +0.0 204,246 + -0.7 204,246 + +0.4 204,246 + -0.0 204,246 + +0.1 204,246 + -0.2 204,246 + +0.2 204,246 + +0.7 204,247 - -0.6 204,251 + -0.0 204,251 + +1.1 204,251 + -1.0 204,251 + +0.2 204,251 + -0.5 204,251 + +0.5 204,307 + +0.1 204,308 - +1.9 204,308 - -0.3 204,321 + -0.3 204,370 + -0.8 204,382 + -0.5 204,382 + +0.0 204,404 + +0.5 204,404 + +0.3 204,404 + -1.2 204,404 + -0.1 204,405 - +0.2 204,428 + -0.1 204,428 + +0.3 204,456 + -0.2 204,556 + EX31_RS22265 0.13 -0.2 204,556 + EX31_RS22265 0.13 -1.7 204,556 + EX31_RS22265 0.13 -1.2 204,618 - EX31_RS22265 0.16 +0.7 204,715 + EX31_RS22265 0.22 -1.2 204,715 + EX31_RS22265 0.22 -0.8 204,715 + EX31_RS22265 0.22 -1.1 204,715 + EX31_RS22265 0.22 -0.1 204,719 + EX31_RS22265 0.22 +0.5 204,720 - EX31_RS22265 0.22 -0.9 204,746 + EX31_RS22265 0.23 -1.0 204,746 + EX31_RS22265 0.23 -1.1 204,746 + EX31_RS22265 0.23 -0.6 204,786 + EX31_RS22265 0.25 -0.0 204,786 + EX31_RS22265 0.25 -0.3 204,786 + EX31_RS22265 0.25 +0.4 204,847 + EX31_RS22265 0.29 -1.0 204,855 + EX31_RS22265 0.29 -0.3 204,856 - EX31_RS22265 0.29 -0.7 204,922 + EX31_RS22265 0.33 -0.3 204,959 + EX31_RS22265 0.35 +0.1 204,959 + EX31_RS22265 0.35 +0.3 205,011 - EX31_RS22265 0.37 -0.1 205,076 + EX31_RS22265 0.41 -0.8 205,079 + EX31_RS22265 0.41 +0.7 205,079 + EX31_RS22265 0.41 -0.5 205,079 + EX31_RS22265 0.41 +0.8 205,090 + EX31_RS22265 0.42 -0.6 205,124 + EX31_RS22265 0.43 -0.5 205,210 + EX31_RS22265 0.48 -0.4 205,339 + EX31_RS22265 0.55 -1.8 205,339 + EX31_RS22265 0.55 -0.1 205,405 - EX31_RS22265 0.58 -1.1 205,463 + EX31_RS22265 0.61 -0.0 205,463 + EX31_RS22265 0.61 -0.3 205,463 + EX31_RS22265 0.61 -0.8 205,463 + EX31_RS22265 0.61 -0.3 205,466 + EX31_RS22265 0.62 -0.3 205,466 + EX31_RS22265 0.62 -2.9 205,466 + EX31_RS22265 0.62 -0.8 205,558 + EX31_RS22265 0.66 +0.1 205,558 + EX31_RS22265 0.66 -0.7 205,558 + EX31_RS22265 0.66 -1.1 205,558 + EX31_RS22265 0.66 +0.3 205,558 + EX31_RS22265 0.66 -0.5 205,559 - EX31_RS22265 0.67 -1.8 205,614 + EX31_RS22265 0.69 -0.7 205,666 + EX31_RS22265 0.72 -0.3 205,678 + EX31_RS22265 0.73 -1.0 205,678 + EX31_RS22265 0.73 -2.5 205,678 + EX31_RS22265 0.73 -0.2 205,678 + EX31_RS22265 0.73 +0.5 205,678 + EX31_RS22265 0.73 -0.3 205,678 + EX31_RS22265 0.73 -1.6 205,707 + EX31_RS22265 0.74 -0.6 205,814 - EX31_RS22265 0.80 -2.6 205,908 + EX31_RS22265 0.85 -1.1 205,908 + EX31_RS22265 0.85 -2.1 206,068 + +1.1 206,068 + -0.2 206,162 + -1.7 206,186 + +0.1 206,322 + -0.7 206,323 - -0.7 206,608 - EX31_RS22270 0.73 +0.5 206,630 + EX31_RS22270 0.79 -0.2 206,687 + +0.1 206,688 - -1.2 206,688 - -0.5 206,688 - +0.7 206,793 + -0.5 206,793 + +1.9 206,794 - +0.2 206,794 - +0.4 206,829 + -0.7 206,830 - +0.4 206,835 + -0.1 206,835 + +0.7 206,836 - +0.7 206,836 - +0.0 206,836 - +0.5 206,836 - +0.0 206,845 - +0.4 206,882 + EX31_RS22275 0.13 -1.3 206,882 + EX31_RS22275 0.13 -0.5 206,883 - EX31_RS22275 0.13 +0.2 206,883 - EX31_RS22275 0.13 -1.9 206,994 + EX31_RS22275 0.41 -0.9 206,995 - EX31_RS22275 0.41 +0.5 207,008 - EX31_RS22275 0.44 +0.1 207,024 - EX31_RS22275 0.48 +0.7
Or see this region's nucleotide sequence