Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21430 and EX31_RS21435 are separated by 136 nucleotides EX31_RS21435 and EX31_RS21440 are separated by 181 nucleotides EX31_RS21440 and EX31_RS21445 are separated by 103 nucleotides
EX31_RS21430: EX31_RS21430 - MFS transporter, at 28,921 to 30,189
_RS21430
EX31_RS21435: EX31_RS21435 - small-conductance mechanosensitive channel MscS, at 30,326 to 31,213
_RS21435
EX31_RS21440: EX31_RS21440 - arginine exporter ArgO, at 31,395 to 32,012
_RS21440
EX31_RS21445: EX31_RS21445 - oxidative stress defense protein, at 32,116 to 32,862
_RS21445
Position (kb) 30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 29.352 kb on + strand, within EX31_RS21430 at 29.352 kb on + strand, within EX31_RS21430 at 29.352 kb on + strand, within EX31_RS21430 at 29.353 kb on - strand, within EX31_RS21430 at 29.353 kb on - strand, within EX31_RS21430 at 29.353 kb on - strand, within EX31_RS21430 at 29.353 kb on - strand, within EX31_RS21430 at 29.353 kb on - strand, within EX31_RS21430 at 29.353 kb on - strand, within EX31_RS21430 at 29.353 kb on - strand, within EX31_RS21430 at 29.353 kb on - strand, within EX31_RS21430 at 29.353 kb on - strand, within EX31_RS21430 at 29.353 kb on - strand, within EX31_RS21430 at 29.406 kb on + strand, within EX31_RS21430 at 29.407 kb on - strand, within EX31_RS21430 at 29.602 kb on + strand, within EX31_RS21430 at 29.602 kb on + strand, within EX31_RS21430 at 29.602 kb on + strand, within EX31_RS21430 at 29.603 kb on - strand, within EX31_RS21430 at 29.603 kb on - strand, within EX31_RS21430 at 29.603 kb on - strand, within EX31_RS21430 at 29.603 kb on - strand, within EX31_RS21430 at 29.603 kb on - strand, within EX31_RS21430 at 29.623 kb on - strand, within EX31_RS21430 at 29.626 kb on + strand, within EX31_RS21430 at 29.626 kb on + strand, within EX31_RS21430 at 29.626 kb on + strand, within EX31_RS21430 at 29.626 kb on + strand, within EX31_RS21430 at 29.627 kb on - strand, within EX31_RS21430 at 29.627 kb on - strand, within EX31_RS21430 at 29.662 kb on - strand, within EX31_RS21430 at 29.707 kb on + strand, within EX31_RS21430 at 29.707 kb on + strand, within EX31_RS21430 at 29.707 kb on + strand, within EX31_RS21430 at 29.765 kb on + strand, within EX31_RS21430 at 29.766 kb on - strand, within EX31_RS21430 at 29.926 kb on + strand, within EX31_RS21430 at 29.926 kb on + strand, within EX31_RS21430 at 29.927 kb on - strand, within EX31_RS21430 at 29.927 kb on - strand, within EX31_RS21430 at 29.927 kb on - strand, within EX31_RS21430 at 29.931 kb on + strand, within EX31_RS21430 at 29.931 kb on + strand, within EX31_RS21430 at 29.931 kb on + strand, within EX31_RS21430 at 29.931 kb on + strand, within EX31_RS21430 at 29.931 kb on + strand, within EX31_RS21430 at 29.931 kb on + strand, within EX31_RS21430 at 29.931 kb on + strand, within EX31_RS21430 at 29.931 kb on + strand, within EX31_RS21430 at 29.931 kb on + strand, within EX31_RS21430 at 29.931 kb on + strand, within EX31_RS21430 at 29.931 kb on + strand, within EX31_RS21430 at 29.932 kb on - strand, within EX31_RS21430 at 29.932 kb on - strand, within EX31_RS21430 at 29.932 kb on - strand, within EX31_RS21430 at 29.932 kb on - strand, within EX31_RS21430 at 29.932 kb on - strand, within EX31_RS21430 at 29.932 kb on - strand, within EX31_RS21430 at 29.932 kb on - strand, within EX31_RS21430 at 30.012 kb on + strand, within EX31_RS21430 at 30.012 kb on + strand, within EX31_RS21430 at 30.012 kb on + strand, within EX31_RS21430 at 30.013 kb on - strand, within EX31_RS21430 at 30.013 kb on - strand, within EX31_RS21430 at 30.013 kb on - strand, within EX31_RS21430 at 30.013 kb on - strand, within EX31_RS21430 at 30.013 kb on - strand, within EX31_RS21430 at 30.013 kb on - strand, within EX31_RS21430 at 30.013 kb on - strand, within EX31_RS21430 at 30.013 kb on - strand, within EX31_RS21430 at 30.037 kb on + strand, within EX31_RS21430 at 30.037 kb on + strand, within EX31_RS21430 at 30.037 kb on + strand, within EX31_RS21430 at 30.037 kb on + strand, within EX31_RS21430 at 30.037 kb on + strand, within EX31_RS21430 at 30.038 kb on - strand, within EX31_RS21430 at 30.038 kb on - strand, within EX31_RS21430 at 30.038 kb on - strand, within EX31_RS21430 at 30.038 kb on - strand, within EX31_RS21430 at 30.038 kb on - strand, within EX31_RS21430 at 30.038 kb on - strand, within EX31_RS21430 at 30.038 kb on - strand, within EX31_RS21430 at 30.064 kb on + strand at 30.064 kb on + strand at 30.065 kb on - strand at 30.065 kb on - strand at 30.065 kb on - strand at 30.065 kb on - strand at 30.065 kb on - strand at 30.065 kb on - strand at 30.188 kb on - strand at 30.235 kb on + strand at 30.235 kb on + strand at 30.235 kb on + strand at 30.235 kb on + strand at 30.235 kb on + strand at 30.235 kb on + strand at 30.235 kb on + strand at 30.235 kb on + strand at 30.235 kb on + strand at 30.235 kb on + strand at 30.240 kb on - strand at 30.246 kb on - strand at 30.246 kb on - strand at 30.307 kb on + strand at 30.308 kb on - strand at 30.319 kb on - strand at 30.323 kb on + strand at 30.323 kb on + strand at 30.323 kb on + strand at 30.323 kb on + strand at 30.324 kb on - strand at 30.324 kb on - strand at 30.324 kb on - strand at 30.324 kb on - strand at 30.336 kb on + strand at 30.337 kb on - strand at 30.358 kb on + strand at 30.404 kb on + strand at 30.415 kb on + strand, within EX31_RS21435 at 30.415 kb on + strand, within EX31_RS21435 at 30.492 kb on + strand, within EX31_RS21435 at 30.492 kb on + strand, within EX31_RS21435 at 30.492 kb on + strand, within EX31_RS21435 at 30.493 kb on - strand, within EX31_RS21435 at 30.493 kb on - strand, within EX31_RS21435 at 30.493 kb on - strand, within EX31_RS21435 at 30.505 kb on + strand, within EX31_RS21435 at 30.548 kb on + strand, within EX31_RS21435 at 30.657 kb on + strand, within EX31_RS21435 at 30.728 kb on + strand, within EX31_RS21435 at 30.728 kb on + strand, within EX31_RS21435 at 30.728 kb on + strand, within EX31_RS21435 at 30.728 kb on + strand, within EX31_RS21435 at 30.728 kb on + strand, within EX31_RS21435 at 30.729 kb on - strand, within EX31_RS21435 at 30.729 kb on - strand, within EX31_RS21435 at 30.729 kb on - strand, within EX31_RS21435 at 30.785 kb on - strand, within EX31_RS21435 at 30.830 kb on - strand, within EX31_RS21435 at 30.830 kb on - strand, within EX31_RS21435 at 30.856 kb on + strand, within EX31_RS21435 at 30.857 kb on - strand, within EX31_RS21435 at 30.857 kb on - strand, within EX31_RS21435 at 30.979 kb on + strand, within EX31_RS21435 at 30.979 kb on + strand, within EX31_RS21435 at 31.037 kb on + strand, within EX31_RS21435 at 31.037 kb on + strand, within EX31_RS21435 at 31.037 kb on + strand, within EX31_RS21435 at 31.037 kb on + strand, within EX31_RS21435 at 31.038 kb on - strand, within EX31_RS21435 at 31.038 kb on - strand, within EX31_RS21435 at 31.126 kb on + strand at 31.126 kb on + strand at 31.127 kb on - strand at 31.127 kb on - strand at 31.127 kb on - strand at 31.157 kb on + strand at 31.157 kb on + strand at 31.158 kb on - strand at 31.211 kb on + strand at 31.216 kb on + strand at 31.216 kb on + strand at 31.216 kb on + strand at 31.216 kb on + strand at 31.216 kb on + strand at 31.216 kb on + strand at 31.216 kb on + strand at 31.216 kb on + strand at 31.217 kb on - strand at 31.217 kb on - strand at 31.217 kb on - strand at 31.217 kb on - strand at 31.217 kb on - strand at 31.217 kb on - strand at 31.217 kb on - strand at 31.275 kb on + strand at 31.276 kb on - strand at 31.293 kb on - strand at 31.303 kb on - strand at 31.336 kb on - strand at 31.336 kb on - strand at 31.350 kb on + strand at 31.350 kb on + strand at 31.350 kb on + strand at 31.350 kb on + strand at 31.351 kb on - strand at 31.351 kb on - strand at 31.351 kb on - strand at 31.371 kb on + strand at 31.372 kb on - strand at 31.403 kb on + strand at 31.404 kb on - strand at 31.497 kb on + strand, within EX31_RS21440 at 31.498 kb on - strand, within EX31_RS21440 at 31.498 kb on - strand, within EX31_RS21440 at 31.498 kb on - strand, within EX31_RS21440 at 31.557 kb on - strand, within EX31_RS21440 at 31.597 kb on + strand, within EX31_RS21440 at 31.598 kb on - strand, within EX31_RS21440 at 31.662 kb on - strand, within EX31_RS21440 at 31.771 kb on - strand, within EX31_RS21440 at 31.778 kb on + strand, within EX31_RS21440 at 31.779 kb on - strand, within EX31_RS21440 at 31.964 kb on + strand at 31.964 kb on + strand at 31.964 kb on + strand at 31.964 kb on + strand at 31.964 kb on + strand at 31.964 kb on + strand at 31.964 kb on + strand at 31.965 kb on - strand at 31.965 kb on - strand at 31.965 kb on - strand at 31.965 kb on - strand at 31.965 kb on - strand at 31.965 kb on - strand at 31.965 kb on - strand at 31.965 kb on - strand at 31.981 kb on + strand at 31.981 kb on + strand at 31.981 kb on + strand at 31.981 kb on + strand at 32.005 kb on + strand at 32.023 kb on + strand at 32.029 kb on + strand at 32.029 kb on + strand at 32.029 kb on + strand at 32.030 kb on - strand at 32.041 kb on + strand at 32.049 kb on + strand at 32.049 kb on + strand at 32.049 kb on + strand at 32.049 kb on + strand at 32.049 kb on + strand at 32.049 kb on + strand at 32.050 kb on - strand at 32.050 kb on - strand at 32.050 kb on - strand at 32.050 kb on - strand at 32.054 kb on + strand at 32.078 kb on + strand at 32.078 kb on + strand at 32.078 kb on + strand at 32.078 kb on + strand at 32.078 kb on + strand at 32.079 kb on - strand at 32.079 kb on - strand at 32.079 kb on - strand at 32.079 kb on - strand at 32.079 kb on - strand at 32.079 kb on - strand at 32.082 kb on + strand at 32.082 kb on + strand at 32.082 kb on + strand at 32.082 kb on + strand at 32.082 kb on + strand at 32.083 kb on - strand at 32.083 kb on - strand at 32.083 kb on - strand at 32.104 kb on - strand at 32.138 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 29,352 + EX31_RS21430 0.34 -0.8 29,352 + EX31_RS21430 0.34 +1.2 29,352 + EX31_RS21430 0.34 -0.0 29,353 - EX31_RS21430 0.34 -0.6 29,353 - EX31_RS21430 0.34 -0.4 29,353 - EX31_RS21430 0.34 -0.9 29,353 - EX31_RS21430 0.34 +0.0 29,353 - EX31_RS21430 0.34 -1.7 29,353 - EX31_RS21430 0.34 -0.1 29,353 - EX31_RS21430 0.34 -0.4 29,353 - EX31_RS21430 0.34 -1.0 29,353 - EX31_RS21430 0.34 +0.3 29,353 - EX31_RS21430 0.34 -0.1 29,406 + EX31_RS21430 0.38 +0.4 29,407 - EX31_RS21430 0.38 +0.4 29,602 + EX31_RS21430 0.54 -0.6 29,602 + EX31_RS21430 0.54 -0.4 29,602 + EX31_RS21430 0.54 -0.7 29,603 - EX31_RS21430 0.54 +1.0 29,603 - EX31_RS21430 0.54 +0.3 29,603 - EX31_RS21430 0.54 +0.2 29,603 - EX31_RS21430 0.54 +0.1 29,603 - EX31_RS21430 0.54 -0.5 29,623 - EX31_RS21430 0.55 +0.0 29,626 + EX31_RS21430 0.56 -0.1 29,626 + EX31_RS21430 0.56 +0.6 29,626 + EX31_RS21430 0.56 +0.2 29,626 + EX31_RS21430 0.56 +0.3 29,627 - EX31_RS21430 0.56 +0.4 29,627 - EX31_RS21430 0.56 -0.4 29,662 - EX31_RS21430 0.58 -1.8 29,707 + EX31_RS21430 0.62 +1.0 29,707 + EX31_RS21430 0.62 +0.8 29,707 + EX31_RS21430 0.62 +1.1 29,765 + EX31_RS21430 0.67 +0.8 29,766 - EX31_RS21430 0.67 -0.8 29,926 + EX31_RS21430 0.79 -1.2 29,926 + EX31_RS21430 0.79 +0.2 29,927 - EX31_RS21430 0.79 -0.1 29,927 - EX31_RS21430 0.79 +0.0 29,927 - EX31_RS21430 0.79 +0.2 29,931 + EX31_RS21430 0.80 -1.0 29,931 + EX31_RS21430 0.80 -0.4 29,931 + EX31_RS21430 0.80 +0.3 29,931 + EX31_RS21430 0.80 +0.0 29,931 + EX31_RS21430 0.80 +0.3 29,931 + EX31_RS21430 0.80 -0.4 29,931 + EX31_RS21430 0.80 +0.2 29,931 + EX31_RS21430 0.80 +0.6 29,931 + EX31_RS21430 0.80 -0.1 29,931 + EX31_RS21430 0.80 -0.4 29,931 + EX31_RS21430 0.80 -0.2 29,932 - EX31_RS21430 0.80 -0.3 29,932 - EX31_RS21430 0.80 -0.4 29,932 - EX31_RS21430 0.80 -0.5 29,932 - EX31_RS21430 0.80 +1.2 29,932 - EX31_RS21430 0.80 -0.6 29,932 - EX31_RS21430 0.80 +0.8 29,932 - EX31_RS21430 0.80 +0.5 30,012 + EX31_RS21430 0.86 -1.3 30,012 + EX31_RS21430 0.86 -0.3 30,012 + EX31_RS21430 0.86 -0.1 30,013 - EX31_RS21430 0.86 +0.5 30,013 - EX31_RS21430 0.86 -0.6 30,013 - EX31_RS21430 0.86 -0.5 30,013 - EX31_RS21430 0.86 +0.3 30,013 - EX31_RS21430 0.86 -0.3 30,013 - EX31_RS21430 0.86 -0.2 30,013 - EX31_RS21430 0.86 +1.8 30,013 - EX31_RS21430 0.86 +0.1 30,037 + EX31_RS21430 0.88 -0.6 30,037 + EX31_RS21430 0.88 +0.1 30,037 + EX31_RS21430 0.88 -0.3 30,037 + EX31_RS21430 0.88 -3.0 30,037 + EX31_RS21430 0.88 -0.1 30,038 - EX31_RS21430 0.88 +0.7 30,038 - EX31_RS21430 0.88 +0.2 30,038 - EX31_RS21430 0.88 -0.6 30,038 - EX31_RS21430 0.88 +0.1 30,038 - EX31_RS21430 0.88 -0.1 30,038 - EX31_RS21430 0.88 -0.0 30,038 - EX31_RS21430 0.88 -0.9 30,064 + -0.1 30,064 + -0.1 30,065 - +0.6 30,065 - -0.4 30,065 - -0.5 30,065 - -0.2 30,065 - +0.4 30,065 - -0.4 30,188 - +1.3 30,235 + -0.0 30,235 + +1.0 30,235 + -1.1 30,235 + +0.1 30,235 + -2.0 30,235 + -0.4 30,235 + +0.6 30,235 + -0.7 30,235 + +0.3 30,235 + -0.7 30,240 - +0.3 30,246 - +0.4 30,246 - +0.4 30,307 + -0.2 30,308 - +0.6 30,319 - +0.6 30,323 + -0.4 30,323 + -0.6 30,323 + +0.4 30,323 + -1.6 30,324 - +0.0 30,324 - -0.4 30,324 - +0.1 30,324 - -0.5 30,336 + -0.3 30,337 - -0.3 30,358 + +0.4 30,404 + -0.5 30,415 + EX31_RS21435 0.10 -0.1 30,415 + EX31_RS21435 0.10 -0.8 30,492 + EX31_RS21435 0.19 -0.1 30,492 + EX31_RS21435 0.19 +0.6 30,492 + EX31_RS21435 0.19 +0.1 30,493 - EX31_RS21435 0.19 +0.7 30,493 - EX31_RS21435 0.19 -0.5 30,493 - EX31_RS21435 0.19 +0.3 30,505 + EX31_RS21435 0.20 +0.5 30,548 + EX31_RS21435 0.25 +0.2 30,657 + EX31_RS21435 0.37 -0.4 30,728 + EX31_RS21435 0.45 +0.8 30,728 + EX31_RS21435 0.45 +0.1 30,728 + EX31_RS21435 0.45 +0.5 30,728 + EX31_RS21435 0.45 +0.9 30,728 + EX31_RS21435 0.45 +0.3 30,729 - EX31_RS21435 0.45 +0.6 30,729 - EX31_RS21435 0.45 +0.2 30,729 - EX31_RS21435 0.45 +0.0 30,785 - EX31_RS21435 0.52 +0.1 30,830 - EX31_RS21435 0.57 -0.3 30,830 - EX31_RS21435 0.57 +0.6 30,856 + EX31_RS21435 0.60 +0.5 30,857 - EX31_RS21435 0.60 +1.1 30,857 - EX31_RS21435 0.60 +0.3 30,979 + EX31_RS21435 0.74 +0.0 30,979 + EX31_RS21435 0.74 +0.1 31,037 + EX31_RS21435 0.80 +0.6 31,037 + EX31_RS21435 0.80 -0.2 31,037 + EX31_RS21435 0.80 -0.2 31,037 + EX31_RS21435 0.80 +0.5 31,038 - EX31_RS21435 0.80 +1.1 31,038 - EX31_RS21435 0.80 +0.7 31,126 + -0.3 31,126 + +0.8 31,127 - +0.5 31,127 - +0.6 31,127 - -1.0 31,157 + +0.2 31,157 + +0.6 31,158 - -1.5 31,211 + -0.3 31,216 + -0.9 31,216 + +0.6 31,216 + +0.1 31,216 + +0.7 31,216 + -0.7 31,216 + +0.0 31,216 + +0.7 31,216 + +1.0 31,217 - +0.1 31,217 - +0.2 31,217 - -1.5 31,217 - -0.1 31,217 - -0.3 31,217 - -0.7 31,217 - +0.1 31,275 + -1.5 31,276 - +1.0 31,293 - +0.0 31,303 - +0.1 31,336 - +0.7 31,336 - -0.6 31,350 + -0.9 31,350 + +0.8 31,350 + -2.8 31,350 + -0.5 31,351 - -0.0 31,351 - +1.1 31,351 - -0.6 31,371 + -0.4 31,372 - -0.2 31,403 + -0.2 31,404 - +0.4 31,497 + EX31_RS21440 0.17 +0.4 31,498 - EX31_RS21440 0.17 -0.6 31,498 - EX31_RS21440 0.17 -0.9 31,498 - EX31_RS21440 0.17 +0.7 31,557 - EX31_RS21440 0.26 +0.6 31,597 + EX31_RS21440 0.33 +0.1 31,598 - EX31_RS21440 0.33 -1.1 31,662 - EX31_RS21440 0.43 -0.2 31,771 - EX31_RS21440 0.61 +0.4 31,778 + EX31_RS21440 0.62 +0.5 31,779 - EX31_RS21440 0.62 +0.9 31,964 + -0.1 31,964 + +0.2 31,964 + -0.2 31,964 + -1.6 31,964 + -0.2 31,964 + +0.0 31,964 + +0.3 31,965 - +2.7 31,965 - +0.5 31,965 - -0.3 31,965 - -1.8 31,965 - +0.1 31,965 - -0.6 31,965 - +0.8 31,965 - +0.4 31,981 + +1.3 31,981 + +0.4 31,981 + +1.4 31,981 + +0.6 32,005 + +0.3 32,023 + +0.7 32,029 + -1.3 32,029 + -1.5 32,029 + +0.2 32,030 - -2.5 32,041 + +0.4 32,049 + -0.7 32,049 + -1.0 32,049 + +0.7 32,049 + +0.2 32,049 + +0.9 32,049 + -0.4 32,050 - -1.0 32,050 - -1.3 32,050 - +0.1 32,050 - -0.0 32,054 + +0.2 32,078 + -0.2 32,078 + -0.2 32,078 + -0.1 32,078 + +0.4 32,078 + +0.1 32,079 - +0.2 32,079 - -0.1 32,079 - +0.1 32,079 - +1.3 32,079 - +0.5 32,079 - -0.5 32,082 + +0.1 32,082 + +0.1 32,082 + -0.9 32,082 + +0.3 32,082 + +0.1 32,083 - -1.1 32,083 - -0.3 32,083 - -0.3 32,104 - -0.6 32,138 + +0.5
Or see this region's nucleotide sequence