Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19785 and EX31_RS19790 are separated by 262 nucleotides EX31_RS19790 and EX31_RS19795 are separated by 64 nucleotides EX31_RS19795 and EX31_RS19800 are separated by 250 nucleotides
EX31_RS19785: EX31_RS19785 - lipoprotein NlpA, at 588,404 to 589,222
_RS19785
EX31_RS19790: EX31_RS19790 - DUF4225 domain-containing protein, at 589,485 to 590,339
_RS19790
EX31_RS19795: EX31_RS19795 - hypothetical protein, at 590,404 to 590,736
_RS19795
EX31_RS19800: EX31_RS19800 - N-acetyltransferase, at 590,987 to 591,514
_RS19800
Position (kb) 589
590
591 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 588.509 kb on - strand, within EX31_RS19785 at 588.509 kb on - strand, within EX31_RS19785 at 588.533 kb on - strand, within EX31_RS19785 at 588.533 kb on - strand, within EX31_RS19785 at 588.533 kb on - strand, within EX31_RS19785 at 588.541 kb on - strand, within EX31_RS19785 at 588.553 kb on + strand, within EX31_RS19785 at 588.553 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.607 kb on - strand, within EX31_RS19785 at 588.607 kb on - strand, within EX31_RS19785 at 588.607 kb on - strand, within EX31_RS19785 at 588.607 kb on - strand, within EX31_RS19785 at 588.607 kb on - strand, within EX31_RS19785 at 588.651 kb on - strand, within EX31_RS19785 at 588.682 kb on + strand, within EX31_RS19785 at 588.682 kb on + strand, within EX31_RS19785 at 588.682 kb on + strand, within EX31_RS19785 at 588.682 kb on + strand, within EX31_RS19785 at 588.683 kb on - strand, within EX31_RS19785 at 588.683 kb on - strand, within EX31_RS19785 at 588.686 kb on - strand, within EX31_RS19785 at 588.686 kb on - strand, within EX31_RS19785 at 588.712 kb on + strand, within EX31_RS19785 at 588.795 kb on - strand, within EX31_RS19785 at 588.795 kb on - strand, within EX31_RS19785 at 588.795 kb on - strand, within EX31_RS19785 at 588.795 kb on - strand, within EX31_RS19785 at 588.795 kb on - strand, within EX31_RS19785 at 589.011 kb on - strand, within EX31_RS19785 at 589.011 kb on - strand, within EX31_RS19785 at 589.011 kb on - strand, within EX31_RS19785 at 589.011 kb on - strand, within EX31_RS19785 at 589.050 kb on + strand, within EX31_RS19785 at 589.050 kb on + strand, within EX31_RS19785 at 589.051 kb on - strand, within EX31_RS19785 at 589.051 kb on - strand, within EX31_RS19785 at 589.051 kb on - strand, within EX31_RS19785 at 589.055 kb on - strand, within EX31_RS19785 at 589.123 kb on + strand, within EX31_RS19785 at 589.124 kb on - strand, within EX31_RS19785 at 589.124 kb on - strand, within EX31_RS19785 at 589.124 kb on - strand, within EX31_RS19785 at 589.185 kb on - strand at 589.269 kb on + strand at 589.270 kb on - strand at 589.330 kb on - strand at 589.331 kb on + strand at 589.339 kb on - strand at 589.385 kb on + strand at 589.505 kb on + strand at 589.567 kb on + strand at 589.570 kb on + strand at 589.882 kb on + strand, within EX31_RS19790 at 589.886 kb on + strand, within EX31_RS19790 at 589.900 kb on + strand, within EX31_RS19790 at 589.901 kb on - strand, within EX31_RS19790 at 589.914 kb on + strand, within EX31_RS19790 at 589.947 kb on - strand, within EX31_RS19790 at 589.958 kb on + strand, within EX31_RS19790 at 589.959 kb on - strand, within EX31_RS19790 at 590.022 kb on - strand, within EX31_RS19790 at 590.028 kb on + strand, within EX31_RS19790 at 590.031 kb on - strand, within EX31_RS19790 at 590.107 kb on - strand, within EX31_RS19790 at 590.123 kb on - strand, within EX31_RS19790 at 590.136 kb on + strand, within EX31_RS19790 at 590.139 kb on - strand, within EX31_RS19790 at 590.187 kb on + strand, within EX31_RS19790 at 590.188 kb on - strand, within EX31_RS19790 at 590.190 kb on - strand, within EX31_RS19790 at 590.194 kb on - strand, within EX31_RS19790 at 590.251 kb on + strand, within EX31_RS19790 at 590.565 kb on + strand, within EX31_RS19795 at 590.642 kb on - strand, within EX31_RS19795 at 590.883 kb on + strand at 590.884 kb on - strand at 590.885 kb on + strand at 590.899 kb on - strand at 590.903 kb on - strand at 590.904 kb on + strand at 590.950 kb on + strand at 590.951 kb on - strand at 591.016 kb on + strand at 591.016 kb on + strand at 591.017 kb on - strand at 591.038 kb on + strand at 591.124 kb on + strand, within EX31_RS19800 at 591.179 kb on + strand, within EX31_RS19800 at 591.185 kb on + strand, within EX31_RS19800 at 591.185 kb on + strand, within EX31_RS19800 at 591.185 kb on + strand, within EX31_RS19800 at 591.210 kb on - strand, within EX31_RS19800 at 591.238 kb on + strand, within EX31_RS19800 at 591.238 kb on + strand, within EX31_RS19800 at 591.238 kb on + strand, within EX31_RS19800 at 591.238 kb on + strand, within EX31_RS19800 at 591.238 kb on + strand, within EX31_RS19800 at 591.238 kb on + strand, within EX31_RS19800 at 591.239 kb on - strand, within EX31_RS19800 at 591.242 kb on + strand, within EX31_RS19800 at 591.242 kb on + strand, within EX31_RS19800 at 591.242 kb on + strand, within EX31_RS19800 at 591.242 kb on + strand, within EX31_RS19800 at 591.242 kb on + strand, within EX31_RS19800 at 591.242 kb on + strand, within EX31_RS19800 at 591.243 kb on - strand, within EX31_RS19800 at 591.245 kb on - strand, within EX31_RS19800 at 591.245 kb on - strand, within EX31_RS19800
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 588,509 - EX31_RS19785 0.13 -0.5 588,509 - EX31_RS19785 0.13 -0.7 588,533 - EX31_RS19785 0.16 -0.3 588,533 - EX31_RS19785 0.16 +0.4 588,533 - EX31_RS19785 0.16 +0.6 588,541 - EX31_RS19785 0.17 +0.0 588,553 + EX31_RS19785 0.18 -0.5 588,553 + EX31_RS19785 0.18 -0.1 588,606 + EX31_RS19785 0.25 -0.6 588,606 + EX31_RS19785 0.25 +0.2 588,606 + EX31_RS19785 0.25 -0.2 588,606 + EX31_RS19785 0.25 -0.6 588,606 + EX31_RS19785 0.25 -0.4 588,606 + EX31_RS19785 0.25 -1.0 588,606 + EX31_RS19785 0.25 +1.4 588,606 + EX31_RS19785 0.25 +0.7 588,606 + EX31_RS19785 0.25 +0.7 588,606 + EX31_RS19785 0.25 +0.1 588,606 + EX31_RS19785 0.25 -0.3 588,606 + EX31_RS19785 0.25 +1.1 588,606 + EX31_RS19785 0.25 -0.5 588,606 + EX31_RS19785 0.25 -0.1 588,606 + EX31_RS19785 0.25 +0.3 588,606 + EX31_RS19785 0.25 +0.2 588,606 + EX31_RS19785 0.25 +0.0 588,606 + EX31_RS19785 0.25 +0.9 588,607 - EX31_RS19785 0.25 +0.0 588,607 - EX31_RS19785 0.25 +0.5 588,607 - EX31_RS19785 0.25 +0.3 588,607 - EX31_RS19785 0.25 -0.6 588,607 - EX31_RS19785 0.25 -0.3 588,651 - EX31_RS19785 0.30 +0.4 588,682 + EX31_RS19785 0.34 +0.1 588,682 + EX31_RS19785 0.34 -1.3 588,682 + EX31_RS19785 0.34 -0.3 588,682 + EX31_RS19785 0.34 -0.6 588,683 - EX31_RS19785 0.34 +0.1 588,683 - EX31_RS19785 0.34 -0.3 588,686 - EX31_RS19785 0.34 +0.0 588,686 - EX31_RS19785 0.34 -0.2 588,712 + EX31_RS19785 0.38 +0.4 588,795 - EX31_RS19785 0.48 +0.2 588,795 - EX31_RS19785 0.48 +0.2 588,795 - EX31_RS19785 0.48 +0.7 588,795 - EX31_RS19785 0.48 -0.2 588,795 - EX31_RS19785 0.48 -1.0 589,011 - EX31_RS19785 0.74 -0.2 589,011 - EX31_RS19785 0.74 +0.7 589,011 - EX31_RS19785 0.74 +0.6 589,011 - EX31_RS19785 0.74 +0.2 589,050 + EX31_RS19785 0.79 -0.8 589,050 + EX31_RS19785 0.79 -0.4 589,051 - EX31_RS19785 0.79 +0.7 589,051 - EX31_RS19785 0.79 -0.6 589,051 - EX31_RS19785 0.79 -0.5 589,055 - EX31_RS19785 0.79 -0.6 589,123 + EX31_RS19785 0.88 -0.0 589,124 - EX31_RS19785 0.88 -0.7 589,124 - EX31_RS19785 0.88 -1.7 589,124 - EX31_RS19785 0.88 -0.1 589,185 - +0.1 589,269 + +0.8 589,270 - +0.1 589,330 - +0.0 589,331 + -0.1 589,339 - +1.0 589,385 + -0.5 589,505 + +0.5 589,567 + -0.1 589,570 + -0.4 589,882 + EX31_RS19790 0.46 -0.8 589,886 + EX31_RS19790 0.47 -1.1 589,900 + EX31_RS19790 0.49 -1.5 589,901 - EX31_RS19790 0.49 -0.1 589,914 + EX31_RS19790 0.50 +0.3 589,947 - EX31_RS19790 0.54 -2.9 589,958 + EX31_RS19790 0.55 -1.0 589,959 - EX31_RS19790 0.55 +0.0 590,022 - EX31_RS19790 0.63 -1.3 590,028 + EX31_RS19790 0.64 -0.4 590,031 - EX31_RS19790 0.64 -0.2 590,107 - EX31_RS19790 0.73 -0.9 590,123 - EX31_RS19790 0.75 -0.0 590,136 + EX31_RS19790 0.76 +0.4 590,139 - EX31_RS19790 0.76 -0.7 590,187 + EX31_RS19790 0.82 -0.8 590,188 - EX31_RS19790 0.82 +0.5 590,190 - EX31_RS19790 0.82 +0.3 590,194 - EX31_RS19790 0.83 -1.7 590,251 + EX31_RS19790 0.90 -0.6 590,565 + EX31_RS19795 0.48 +0.6 590,642 - EX31_RS19795 0.71 -0.7 590,883 + -2.6 590,884 - +0.1 590,885 + -1.5 590,899 - -0.1 590,903 - -0.2 590,904 + -0.0 590,950 + +0.4 590,951 - +0.2 591,016 + -0.4 591,016 + -0.3 591,017 - +0.3 591,038 + -0.3 591,124 + EX31_RS19800 0.26 +0.9 591,179 + EX31_RS19800 0.36 +0.6 591,185 + EX31_RS19800 0.38 -1.8 591,185 + EX31_RS19800 0.38 -0.3 591,185 + EX31_RS19800 0.38 -0.8 591,210 - EX31_RS19800 0.42 -0.2 591,238 + EX31_RS19800 0.48 -1.1 591,238 + EX31_RS19800 0.48 +0.8 591,238 + EX31_RS19800 0.48 +1.7 591,238 + EX31_RS19800 0.48 -0.0 591,238 + EX31_RS19800 0.48 +0.1 591,238 + EX31_RS19800 0.48 -0.0 591,239 - EX31_RS19800 0.48 -1.1 591,242 + EX31_RS19800 0.48 +0.2 591,242 + EX31_RS19800 0.48 -0.1 591,242 + EX31_RS19800 0.48 -0.5 591,242 + EX31_RS19800 0.48 -0.4 591,242 + EX31_RS19800 0.48 +1.3 591,242 + EX31_RS19800 0.48 +1.1 591,243 - EX31_RS19800 0.48 -0.6 591,245 - EX31_RS19800 0.49 -1.6 591,245 - EX31_RS19800 0.49 -0.3
Or see this region's nucleotide sequence