Strain Fitness in Rahnella sp. WP5 around EX31_RS19485

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19480 and EX31_RS19485 are separated by 166 nucleotidesEX31_RS19485 and EX31_RS19490 are separated by 93 nucleotides EX31_RS19480: EX31_RS19480 - acetate kinase, at 525,366 to 526,568 _RS19480 EX31_RS19485: EX31_RS19485 - phosphate acetyltransferase, at 526,735 to 528,894 _RS19485 EX31_RS19490: EX31_RS19490 - transketolase family protein, at 528,988 to 529,941 _RS19490 Position (kb) 526 527 528 529Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 525.849 kb on + strand, within EX31_RS19480at 525.849 kb on + strand, within EX31_RS19480at 525.876 kb on + strand, within EX31_RS19480at 525.876 kb on + strand, within EX31_RS19480at 525.877 kb on - strand, within EX31_RS19480at 525.879 kb on - strand, within EX31_RS19480at 525.927 kb on + strand, within EX31_RS19480at 525.927 kb on + strand, within EX31_RS19480at 525.927 kb on + strand, within EX31_RS19480at 526.034 kb on + strand, within EX31_RS19480at 526.034 kb on + strand, within EX31_RS19480at 526.034 kb on + strand, within EX31_RS19480at 526.034 kb on + strand, within EX31_RS19480at 526.046 kb on + strand, within EX31_RS19480at 526.046 kb on + strand, within EX31_RS19480at 526.047 kb on - strand, within EX31_RS19480at 526.118 kb on + strand, within EX31_RS19480at 526.118 kb on + strand, within EX31_RS19480at 526.119 kb on - strand, within EX31_RS19480at 526.179 kb on - strand, within EX31_RS19480at 526.227 kb on + strand, within EX31_RS19480at 526.242 kb on + strand, within EX31_RS19480at 526.242 kb on + strand, within EX31_RS19480at 526.242 kb on + strand, within EX31_RS19480at 526.242 kb on + strand, within EX31_RS19480at 526.242 kb on + strand, within EX31_RS19480at 526.242 kb on + strand, within EX31_RS19480at 526.243 kb on - strand, within EX31_RS19480at 526.243 kb on - strand, within EX31_RS19480at 526.243 kb on - strand, within EX31_RS19480at 526.243 kb on - strand, within EX31_RS19480at 526.302 kb on + strand, within EX31_RS19480at 526.302 kb on + strand, within EX31_RS19480at 526.303 kb on - strand, within EX31_RS19480at 526.351 kb on + strand, within EX31_RS19480at 526.411 kb on + strand, within EX31_RS19480at 526.411 kb on + strand, within EX31_RS19480at 526.411 kb on + strand, within EX31_RS19480at 526.411 kb on + strand, within EX31_RS19480at 526.445 kb on + strand, within EX31_RS19480at 526.466 kb on + strandat 526.566 kb on + strandat 526.567 kb on - strandat 526.611 kb on + strandat 526.611 kb on + strandat 526.611 kb on + strandat 526.611 kb on + strandat 526.611 kb on + strandat 526.611 kb on + strandat 526.613 kb on + strandat 526.613 kb on + strandat 526.614 kb on - strandat 526.614 kb on - strandat 526.663 kb on + strandat 526.663 kb on + strandat 526.663 kb on + strandat 526.743 kb on + strandat 526.744 kb on - strandat 526.749 kb on + strandat 526.749 kb on + strandat 526.749 kb on + strandat 526.749 kb on + strandat 526.749 kb on + strandat 526.749 kb on + strandat 526.749 kb on + strandat 526.750 kb on - strandat 526.750 kb on - strandat 526.750 kb on - strandat 526.750 kb on - strandat 526.750 kb on - strandat 526.750 kb on - strandat 526.839 kb on + strandat 526.839 kb on + strandat 526.902 kb on + strandat 526.903 kb on - strandat 527.060 kb on + strand, within EX31_RS19485at 527.185 kb on - strand, within EX31_RS19485at 527.247 kb on + strand, within EX31_RS19485at 527.283 kb on + strand, within EX31_RS19485at 527.283 kb on + strand, within EX31_RS19485at 527.283 kb on + strand, within EX31_RS19485at 527.283 kb on + strand, within EX31_RS19485at 527.283 kb on + strand, within EX31_RS19485at 527.284 kb on - strand, within EX31_RS19485at 527.341 kb on - strand, within EX31_RS19485at 527.457 kb on + strand, within EX31_RS19485at 527.457 kb on + strand, within EX31_RS19485at 527.458 kb on - strand, within EX31_RS19485at 527.458 kb on - strand, within EX31_RS19485at 527.529 kb on + strand, within EX31_RS19485at 527.529 kb on + strand, within EX31_RS19485at 527.638 kb on - strand, within EX31_RS19485at 527.821 kb on + strand, within EX31_RS19485at 527.821 kb on + strand, within EX31_RS19485at 527.821 kb on + strand, within EX31_RS19485at 527.821 kb on + strand, within EX31_RS19485at 527.821 kb on + strand, within EX31_RS19485at 527.822 kb on - strand, within EX31_RS19485at 527.822 kb on - strand, within EX31_RS19485at 527.822 kb on - strand, within EX31_RS19485at 527.822 kb on - strand, within EX31_RS19485at 527.949 kb on + strand, within EX31_RS19485at 527.950 kb on - strand, within EX31_RS19485at 528.133 kb on + strand, within EX31_RS19485at 528.133 kb on + strand, within EX31_RS19485at 528.133 kb on + strand, within EX31_RS19485at 528.134 kb on - strand, within EX31_RS19485at 528.243 kb on + strand, within EX31_RS19485at 528.385 kb on + strand, within EX31_RS19485at 528.414 kb on + strand, within EX31_RS19485at 528.610 kb on + strand, within EX31_RS19485at 528.610 kb on + strand, within EX31_RS19485at 528.610 kb on + strand, within EX31_RS19485at 528.610 kb on + strand, within EX31_RS19485at 528.611 kb on - strand, within EX31_RS19485at 528.645 kb on + strand, within EX31_RS19485at 528.646 kb on - strand, within EX31_RS19485at 528.646 kb on - strand, within EX31_RS19485at 528.721 kb on + strandat 528.777 kb on + strandat 528.783 kb on + strandat 528.832 kb on + strandat 528.833 kb on - strandat 528.892 kb on + strandat 529.017 kb on + strandat 529.017 kb on + strandat 529.018 kb on - strandat 529.037 kb on + strandat 529.164 kb on + strand, within EX31_RS19490at 529.165 kb on - strand, within EX31_RS19490at 529.165 kb on - strand, within EX31_RS19490at 529.165 kb on - strand, within EX31_RS19490at 529.165 kb on - strand, within EX31_RS19490at 529.165 kb on - strand, within EX31_RS19490at 529.165 kb on - strand, within EX31_RS19490at 529.208 kb on + strand, within EX31_RS19490at 529.209 kb on - strand, within EX31_RS19490at 529.245 kb on + strand, within EX31_RS19490at 529.321 kb on - strand, within EX31_RS19490at 529.321 kb on - strand, within EX31_RS19490at 529.384 kb on - strand, within EX31_RS19490at 529.384 kb on - strand, within EX31_RS19490at 529.432 kb on - strand, within EX31_RS19490at 529.546 kb on - strand, within EX31_RS19490at 529.546 kb on - strand, within EX31_RS19490at 529.560 kb on + strand, within EX31_RS19490at 529.560 kb on + strand, within EX31_RS19490at 529.560 kb on + strand, within EX31_RS19490at 529.560 kb on + strand, within EX31_RS19490at 529.560 kb on + strand, within EX31_RS19490at 529.560 kb on + strand, within EX31_RS19490at 529.561 kb on - strand, within EX31_RS19490at 529.561 kb on - strand, within EX31_RS19490at 529.561 kb on - strand, within EX31_RS19490at 529.561 kb on - strand, within EX31_RS19490at 529.561 kb on - strand, within EX31_RS19490at 529.561 kb on - strand, within EX31_RS19490at 529.621 kb on - strand, within EX31_RS19490at 529.621 kb on - strand, within EX31_RS19490at 529.621 kb on - strand, within EX31_RS19490at 529.644 kb on + strand, within EX31_RS19490at 529.645 kb on - strand, within EX31_RS19490at 529.645 kb on - strand, within EX31_RS19490at 529.645 kb on - strand, within EX31_RS19490at 529.645 kb on - strand, within EX31_RS19490at 529.645 kb on - strand, within EX31_RS19490at 529.645 kb on - strand, within EX31_RS19490at 529.645 kb on - strand, within EX31_RS19490at 529.689 kb on + strand, within EX31_RS19490at 529.690 kb on - strand, within EX31_RS19490at 529.690 kb on - strand, within EX31_RS19490at 529.768 kb on - strand, within EX31_RS19490at 529.796 kb on - strand, within EX31_RS19490at 529.858 kb on + strandat 529.887 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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525,849 + EX31_RS19480 0.40 +2.3
525,849 + EX31_RS19480 0.40 -0.1
525,876 + EX31_RS19480 0.42 -0.8
525,876 + EX31_RS19480 0.42 -0.7
525,877 - EX31_RS19480 0.42 -0.4
525,879 - EX31_RS19480 0.43 +0.9
525,927 + EX31_RS19480 0.47 -1.7
525,927 + EX31_RS19480 0.47 -0.9
525,927 + EX31_RS19480 0.47 -0.1
526,034 + EX31_RS19480 0.56 +0.6
526,034 + EX31_RS19480 0.56 -0.1
526,034 + EX31_RS19480 0.56 +0.1
526,034 + EX31_RS19480 0.56 -1.8
526,046 + EX31_RS19480 0.57 -1.0
526,046 + EX31_RS19480 0.57 +0.2
526,047 - EX31_RS19480 0.57 +0.1
526,118 + EX31_RS19480 0.63 +1.0
526,118 + EX31_RS19480 0.63 -1.7
526,119 - EX31_RS19480 0.63 +0.6
526,179 - EX31_RS19480 0.68 -0.9
526,227 + EX31_RS19480 0.72 -0.4
526,242 + EX31_RS19480 0.73 -0.2
526,242 + EX31_RS19480 0.73 -1.0
526,242 + EX31_RS19480 0.73 -1.7
526,242 + EX31_RS19480 0.73 +0.1
526,242 + EX31_RS19480 0.73 -1.4
526,242 + EX31_RS19480 0.73 -0.5
526,243 - EX31_RS19480 0.73 +1.1
526,243 - EX31_RS19480 0.73 -1.7
526,243 - EX31_RS19480 0.73 +0.7
526,243 - EX31_RS19480 0.73 +0.3
526,302 + EX31_RS19480 0.78 -1.0
526,302 + EX31_RS19480 0.78 -1.2
526,303 - EX31_RS19480 0.78 +0.4
526,351 + EX31_RS19480 0.82 -0.2
526,411 + EX31_RS19480 0.87 -0.9
526,411 + EX31_RS19480 0.87 -1.1
526,411 + EX31_RS19480 0.87 -0.9
526,411 + EX31_RS19480 0.87 -1.3
526,445 + EX31_RS19480 0.90 -0.4
526,466 + -0.3
526,566 + +0.9
526,567 - +1.1
526,611 + -0.8
526,611 + -0.1
526,611 + -0.7
526,611 + -2.5
526,611 + -0.7
526,611 + +0.5
526,613 + +0.8
526,613 + +0.3
526,614 - -1.2
526,614 - -0.1
526,663 + +0.3
526,663 + +0.1
526,663 + -0.6
526,743 + +0.2
526,744 - +0.6
526,749 + +0.5
526,749 + +0.1
526,749 + -0.8
526,749 + +0.9
526,749 + -0.1
526,749 + -0.1
526,749 + +0.5
526,750 - +0.3
526,750 - +0.4
526,750 - +0.6
526,750 - -0.3
526,750 - -0.1
526,750 - -0.5
526,839 + -0.0
526,839 + -0.1
526,902 + -0.1
526,903 - +0.0
527,060 + EX31_RS19485 0.15 +1.1
527,185 - EX31_RS19485 0.21 -1.0
527,247 + EX31_RS19485 0.24 -0.7
527,283 + EX31_RS19485 0.25 -1.3
527,283 + EX31_RS19485 0.25 -0.7
527,283 + EX31_RS19485 0.25 -1.0
527,283 + EX31_RS19485 0.25 -0.6
527,283 + EX31_RS19485 0.25 -1.3
527,284 - EX31_RS19485 0.25 +0.5
527,341 - EX31_RS19485 0.28 +1.3
527,457 + EX31_RS19485 0.33 -0.8
527,457 + EX31_RS19485 0.33 -0.4
527,458 - EX31_RS19485 0.33 -0.3
527,458 - EX31_RS19485 0.33 +0.5
527,529 + EX31_RS19485 0.37 +0.9
527,529 + EX31_RS19485 0.37 -0.9
527,638 - EX31_RS19485 0.42 -1.4
527,821 + EX31_RS19485 0.50 +0.2
527,821 + EX31_RS19485 0.50 -0.3
527,821 + EX31_RS19485 0.50 +0.3
527,821 + EX31_RS19485 0.50 -1.5
527,821 + EX31_RS19485 0.50 +0.9
527,822 - EX31_RS19485 0.50 -1.1
527,822 - EX31_RS19485 0.50 -0.5
527,822 - EX31_RS19485 0.50 +1.5
527,822 - EX31_RS19485 0.50 -0.1
527,949 + EX31_RS19485 0.56 -0.8
527,950 - EX31_RS19485 0.56 -0.7
528,133 + EX31_RS19485 0.65 +0.7
528,133 + EX31_RS19485 0.65 -1.0
528,133 + EX31_RS19485 0.65 +0.5
528,134 - EX31_RS19485 0.65 -0.9
528,243 + EX31_RS19485 0.70 -1.7
528,385 + EX31_RS19485 0.76 -0.1
528,414 + EX31_RS19485 0.78 -3.0
528,610 + EX31_RS19485 0.87 +0.9
528,610 + EX31_RS19485 0.87 -0.8
528,610 + EX31_RS19485 0.87 -0.9
528,610 + EX31_RS19485 0.87 -0.5
528,611 - EX31_RS19485 0.87 -0.7
528,645 + EX31_RS19485 0.88 -1.6
528,646 - EX31_RS19485 0.88 -1.7
528,646 - EX31_RS19485 0.88 -0.8
528,721 + +1.1
528,777 + +0.7
528,783 + -1.7
528,832 + -0.0
528,833 - +0.1
528,892 + -0.3
529,017 + -0.4
529,017 + -0.7
529,018 - -1.0
529,037 + -1.1
529,164 + EX31_RS19490 0.18 -0.4
529,165 - EX31_RS19490 0.19 +0.5
529,165 - EX31_RS19490 0.19 -0.9
529,165 - EX31_RS19490 0.19 -0.7
529,165 - EX31_RS19490 0.19 +0.2
529,165 - EX31_RS19490 0.19 +0.4
529,165 - EX31_RS19490 0.19 +0.1
529,208 + EX31_RS19490 0.23 -0.7
529,209 - EX31_RS19490 0.23 -0.5
529,245 + EX31_RS19490 0.27 +1.1
529,321 - EX31_RS19490 0.35 -1.6
529,321 - EX31_RS19490 0.35 -0.1
529,384 - EX31_RS19490 0.42 -1.4
529,384 - EX31_RS19490 0.42 -0.8
529,432 - EX31_RS19490 0.47 +0.2
529,546 - EX31_RS19490 0.58 -0.0
529,546 - EX31_RS19490 0.58 -0.3
529,560 + EX31_RS19490 0.60 -0.8
529,560 + EX31_RS19490 0.60 +0.9
529,560 + EX31_RS19490 0.60 -0.5
529,560 + EX31_RS19490 0.60 -2.0
529,560 + EX31_RS19490 0.60 -0.1
529,560 + EX31_RS19490 0.60 +0.3
529,561 - EX31_RS19490 0.60 +0.8
529,561 - EX31_RS19490 0.60 -0.1
529,561 - EX31_RS19490 0.60 +0.6
529,561 - EX31_RS19490 0.60 -0.9
529,561 - EX31_RS19490 0.60 +0.2
529,561 - EX31_RS19490 0.60 -1.8
529,621 - EX31_RS19490 0.66 -0.4
529,621 - EX31_RS19490 0.66 -0.4
529,621 - EX31_RS19490 0.66 -0.8
529,644 + EX31_RS19490 0.69 -0.3
529,645 - EX31_RS19490 0.69 +0.6
529,645 - EX31_RS19490 0.69 -0.6
529,645 - EX31_RS19490 0.69 +0.4
529,645 - EX31_RS19490 0.69 +0.5
529,645 - EX31_RS19490 0.69 -0.6
529,645 - EX31_RS19490 0.69 -1.7
529,645 - EX31_RS19490 0.69 +0.9
529,689 + EX31_RS19490 0.73 -0.4
529,690 - EX31_RS19490 0.74 -0.7
529,690 - EX31_RS19490 0.74 -0.1
529,768 - EX31_RS19490 0.82 -2.0
529,796 - EX31_RS19490 0.85 +0.2
529,858 + -0.3
529,887 - -0.9

Or see this region's nucleotide sequence