Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19380 and EX31_RS19385 are separated by 97 nucleotides EX31_RS19385 and EX31_RS19390 overlap by 4 nucleotides EX31_RS19390 and EX31_RS19395 overlap by 4 nucleotides EX31_RS19395 and EX31_RS19400 are separated by 12 nucleotides
EX31_RS19380: EX31_RS19380 - NADH-quinone oxidoreductase subunit M, at 502,624 to 504,153
_RS19380
EX31_RS19385: EX31_RS19385 - NADH-quinone oxidoreductase subunit L, at 504,251 to 506,098
_RS19385
EX31_RS19390: EX31_RS19390 - NADH-quinone oxidoreductase subunit NuoK, at 506,095 to 506,397
_RS19390
EX31_RS19395: EX31_RS19395 - NADH-quinone oxidoreductase subunit J, at 506,394 to 506,954
_RS19395
EX31_RS19400: EX31_RS19400 - NADH-quinone oxidoreductase subunit NuoI, at 506,967 to 507,509
_RS19400
Position (kb) 504
505
506
507 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 503.256 kb on - strand, within EX31_RS19380 at 503.256 kb on - strand, within EX31_RS19380 at 503.263 kb on - strand, within EX31_RS19380 at 503.493 kb on - strand, within EX31_RS19380 at 503.535 kb on - strand, within EX31_RS19380 at 503.564 kb on + strand, within EX31_RS19380 at 503.565 kb on - strand, within EX31_RS19380 at 503.565 kb on - strand, within EX31_RS19380 at 503.565 kb on - strand, within EX31_RS19380 at 503.622 kb on + strand, within EX31_RS19380 at 503.623 kb on - strand, within EX31_RS19380 at 503.624 kb on + strand, within EX31_RS19380 at 503.625 kb on - strand, within EX31_RS19380 at 503.625 kb on - strand, within EX31_RS19380 at 503.625 kb on - strand, within EX31_RS19380 at 503.625 kb on - strand, within EX31_RS19380 at 503.652 kb on + strand, within EX31_RS19380 at 503.662 kb on - strand, within EX31_RS19380 at 503.703 kb on - strand, within EX31_RS19380 at 504.074 kb on - strand at 504.130 kb on - strand at 504.133 kb on + strand at 504.134 kb on - strand at 504.149 kb on - strand at 504.149 kb on - strand at 504.175 kb on - strand at 504.188 kb on - strand at 504.188 kb on - strand at 504.188 kb on - strand at 504.229 kb on + strand at 504.230 kb on - strand at 504.230 kb on - strand at 504.233 kb on + strand at 504.233 kb on + strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.241 kb on + strand at 504.242 kb on - strand at 504.242 kb on - strand at 504.242 kb on - strand at 504.242 kb on - strand at 504.252 kb on + strand at 504.310 kb on - strand at 504.310 kb on - strand at 504.456 kb on + strand, within EX31_RS19385 at 504.556 kb on - strand, within EX31_RS19385 at 504.711 kb on - strand, within EX31_RS19385 at 504.963 kb on + strand, within EX31_RS19385 at 504.963 kb on + strand, within EX31_RS19385 at 504.983 kb on - strand, within EX31_RS19385 at 504.987 kb on - strand, within EX31_RS19385 at 505.138 kb on - strand, within EX31_RS19385 at 505.235 kb on - strand, within EX31_RS19385 at 505.300 kb on - strand, within EX31_RS19385 at 505.617 kb on + strand, within EX31_RS19385 at 505.618 kb on - strand, within EX31_RS19385 at 505.639 kb on - strand, within EX31_RS19385 at 505.671 kb on + strand, within EX31_RS19385 at 505.671 kb on + strand, within EX31_RS19385 at 505.672 kb on - strand, within EX31_RS19385 at 505.672 kb on - strand, within EX31_RS19385 at 505.773 kb on + strand, within EX31_RS19385 at 505.773 kb on + strand, within EX31_RS19385 at 505.774 kb on - strand, within EX31_RS19385 at 505.959 kb on + strand at 505.960 kb on - strand at 505.963 kb on + strand at 505.963 kb on + strand at 505.964 kb on - strand at 506.085 kb on + strand at 506.085 kb on + strand at 506.086 kb on - strand at 506.119 kb on - strand at 506.212 kb on - strand, within EX31_RS19390 at 506.213 kb on + strand, within EX31_RS19390 at 506.213 kb on + strand, within EX31_RS19390 at 506.214 kb on - strand, within EX31_RS19390 at 506.214 kb on - strand, within EX31_RS19390 at 506.214 kb on - strand, within EX31_RS19390 at 506.214 kb on - strand, within EX31_RS19390 at 506.214 kb on - strand, within EX31_RS19390 at 506.214 kb on - strand, within EX31_RS19390 at 506.243 kb on + strand, within EX31_RS19390 at 506.244 kb on - strand, within EX31_RS19390 at 506.244 kb on - strand, within EX31_RS19390 at 506.308 kb on - strand, within EX31_RS19390 at 506.308 kb on - strand, within EX31_RS19390 at 506.745 kb on + strand, within EX31_RS19395 at 506.766 kb on - strand, within EX31_RS19395 at 506.781 kb on + strand, within EX31_RS19395 at 506.782 kb on - strand, within EX31_RS19395 at 506.810 kb on - strand, within EX31_RS19395 at 506.863 kb on + strand, within EX31_RS19395 at 506.863 kb on + strand, within EX31_RS19395 at 506.864 kb on - strand, within EX31_RS19395 at 506.937 kb on - strand at 506.938 kb on + strand at 506.939 kb on - strand at 507.068 kb on - strand, within EX31_RS19400
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 503,256 - EX31_RS19380 0.41 +0.8 503,256 - EX31_RS19380 0.41 +0.7 503,263 - EX31_RS19380 0.42 +0.4 503,493 - EX31_RS19380 0.57 +1.0 503,535 - EX31_RS19380 0.60 -1.2 503,564 + EX31_RS19380 0.61 +1.0 503,565 - EX31_RS19380 0.62 +2.2 503,565 - EX31_RS19380 0.62 +0.5 503,565 - EX31_RS19380 0.62 +1.3 503,622 + EX31_RS19380 0.65 +0.5 503,623 - EX31_RS19380 0.65 +0.1 503,624 + EX31_RS19380 0.65 +0.2 503,625 - EX31_RS19380 0.65 -0.9 503,625 - EX31_RS19380 0.65 +0.3 503,625 - EX31_RS19380 0.65 +2.0 503,625 - EX31_RS19380 0.65 -0.2 503,652 + EX31_RS19380 0.67 -0.7 503,662 - EX31_RS19380 0.68 +1.2 503,703 - EX31_RS19380 0.71 +1.0 504,074 - +1.1 504,130 - +0.8 504,133 + +0.2 504,134 - +0.3 504,149 - +1.1 504,149 - -0.0 504,175 - +1.4 504,188 - +0.4 504,188 - +0.8 504,188 - +0.3 504,229 + +1.5 504,230 - +0.7 504,230 - +0.2 504,233 + +0.1 504,233 + +0.1 504,234 - -0.3 504,234 - +0.2 504,234 - +1.5 504,234 - +1.0 504,234 - +1.0 504,234 - +0.3 504,234 - +0.8 504,234 - +0.5 504,234 - +0.8 504,234 - +0.5 504,241 + -1.5 504,242 - +0.5 504,242 - +0.4 504,242 - +0.8 504,242 - -0.3 504,252 + +2.1 504,310 - +3.1 504,310 - -0.2 504,456 + EX31_RS19385 0.11 +2.8 504,556 - EX31_RS19385 0.17 -0.2 504,711 - EX31_RS19385 0.25 +0.6 504,963 + EX31_RS19385 0.39 +1.5 504,963 + EX31_RS19385 0.39 +0.2 504,983 - EX31_RS19385 0.40 -1.8 504,987 - EX31_RS19385 0.40 -0.7 505,138 - EX31_RS19385 0.48 +0.3 505,235 - EX31_RS19385 0.53 +0.7 505,300 - EX31_RS19385 0.57 -0.2 505,617 + EX31_RS19385 0.74 +1.0 505,618 - EX31_RS19385 0.74 +1.7 505,639 - EX31_RS19385 0.75 +0.9 505,671 + EX31_RS19385 0.77 -0.1 505,671 + EX31_RS19385 0.77 +1.0 505,672 - EX31_RS19385 0.77 +1.2 505,672 - EX31_RS19385 0.77 +1.3 505,773 + EX31_RS19385 0.82 +2.1 505,773 + EX31_RS19385 0.82 +0.7 505,774 - EX31_RS19385 0.82 +1.2 505,959 + -0.3 505,960 - +2.1 505,963 + +2.1 505,963 + +0.7 505,964 - +0.7 506,085 + -0.2 506,085 + +1.3 506,086 - +0.5 506,119 - +1.0 506,212 - EX31_RS19390 0.39 +1.1 506,213 + EX31_RS19390 0.39 -0.3 506,213 + EX31_RS19390 0.39 +0.2 506,214 - EX31_RS19390 0.39 -2.3 506,214 - EX31_RS19390 0.39 -0.5 506,214 - EX31_RS19390 0.39 +1.1 506,214 - EX31_RS19390 0.39 -0.2 506,214 - EX31_RS19390 0.39 +0.9 506,214 - EX31_RS19390 0.39 +1.8 506,243 + EX31_RS19390 0.49 +1.8 506,244 - EX31_RS19390 0.49 +1.6 506,244 - EX31_RS19390 0.49 +0.9 506,308 - EX31_RS19390 0.70 +0.6 506,308 - EX31_RS19390 0.70 +1.2 506,745 + EX31_RS19395 0.63 +1.1 506,766 - EX31_RS19395 0.66 +1.9 506,781 + EX31_RS19395 0.69 +3.1 506,782 - EX31_RS19395 0.69 +0.4 506,810 - EX31_RS19395 0.74 +0.3 506,863 + EX31_RS19395 0.84 -2.3 506,863 + EX31_RS19395 0.84 -0.8 506,864 - EX31_RS19395 0.84 +0.7 506,937 - +0.9 506,938 + +0.6 506,939 - +2.1 507,068 - EX31_RS19400 0.19 +2.7
Or see this region's nucleotide sequence