Strain Fitness in Rahnella sp. WP5 around EX31_RS13860

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13855 and EX31_RS13860 are separated by 221 nucleotidesEX31_RS13860 and EX31_RS13865 are separated by 29 nucleotidesEX31_RS13865 and EX31_RS13870 are separated by 547 nucleotides EX31_RS13855: EX31_RS13855 - MATE family efflux transporter, at 30,636 to 32,009 _RS13855 EX31_RS13860: EX31_RS13860 - tRNA-Val, at 32,231 to 32,307 _RS13860 EX31_RS13865: EX31_RS13865 - tRNA-Val, at 32,337 to 32,413 _RS13865 EX31_RS13870: EX31_RS13870 - pyruvate kinase PykF, at 32,961 to 34,373 _RS13870 Position (kb) 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1at 31.234 kb on + strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.235 kb on - strand, within EX31_RS13855at 31.236 kb on + strand, within EX31_RS13855at 31.237 kb on - strand, within EX31_RS13855at 31.266 kb on + strand, within EX31_RS13855at 31.270 kb on + strand, within EX31_RS13855at 31.270 kb on + strand, within EX31_RS13855at 31.271 kb on - strand, within EX31_RS13855at 31.271 kb on - strand, within EX31_RS13855at 31.508 kb on - strand, within EX31_RS13855at 31.581 kb on + strand, within EX31_RS13855at 31.581 kb on + strand, within EX31_RS13855at 31.581 kb on + strand, within EX31_RS13855at 31.582 kb on - strand, within EX31_RS13855at 31.583 kb on + strand, within EX31_RS13855at 31.583 kb on + strand, within EX31_RS13855at 31.584 kb on - strand, within EX31_RS13855at 31.584 kb on - strand, within EX31_RS13855at 31.584 kb on - strand, within EX31_RS13855at 31.589 kb on + strand, within EX31_RS13855at 31.591 kb on + strand, within EX31_RS13855at 31.591 kb on + strand, within EX31_RS13855at 31.591 kb on + strand, within EX31_RS13855at 31.591 kb on + strand, within EX31_RS13855at 31.592 kb on - strand, within EX31_RS13855at 31.592 kb on - strand, within EX31_RS13855at 31.592 kb on - strand, within EX31_RS13855at 31.592 kb on - strand, within EX31_RS13855at 31.604 kb on + strand, within EX31_RS13855at 31.665 kb on + strand, within EX31_RS13855at 31.668 kb on - strand, within EX31_RS13855at 31.776 kb on + strand, within EX31_RS13855at 31.777 kb on - strand, within EX31_RS13855at 31.778 kb on + strand, within EX31_RS13855at 31.779 kb on - strand, within EX31_RS13855at 31.779 kb on - strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.801 kb on - strand, within EX31_RS13855at 31.801 kb on - strand, within EX31_RS13855at 31.801 kb on - strand, within EX31_RS13855at 31.801 kb on - strand, within EX31_RS13855at 31.802 kb on + strand, within EX31_RS13855at 31.803 kb on - strand, within EX31_RS13855at 31.805 kb on + strand, within EX31_RS13855at 31.805 kb on + strand, within EX31_RS13855at 31.805 kb on + strand, within EX31_RS13855at 31.806 kb on - strand, within EX31_RS13855at 31.818 kb on + strand, within EX31_RS13855at 31.845 kb on + strand, within EX31_RS13855at 31.980 kb on + strandat 32.083 kb on + strandat 32.083 kb on + strandat 32.111 kb on + strandat 32.111 kb on + strandat 32.111 kb on + strandat 32.112 kb on - strandat 32.112 kb on - strandat 32.112 kb on - strandat 32.112 kb on - strandat 32.112 kb on - strandat 32.133 kb on + strandat 32.134 kb on - strandat 32.238 kb on + strandat 32.238 kb on + strandat 32.315 kb on + strandat 32.315 kb on + strandat 32.331 kb on + strandat 32.331 kb on + strandat 32.331 kb on + strandat 32.331 kb on + strandat 32.331 kb on + strandat 32.544 kb on - strandat 32.701 kb on + strandat 32.823 kb on + strandat 32.823 kb on + strandat 32.826 kb on + strandat 32.850 kb on + strandat 32.856 kb on + strandat 32.856 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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31,234 + EX31_RS13855 0.44 +0.4
31,234 + EX31_RS13855 0.44 +0.3
31,234 + EX31_RS13855 0.44 -1.4
31,234 + EX31_RS13855 0.44 -1.1
31,234 + EX31_RS13855 0.44 -1.2
31,234 + EX31_RS13855 0.44 +0.0
31,234 + EX31_RS13855 0.44 -0.7
31,234 + EX31_RS13855 0.44 -0.1
31,235 - EX31_RS13855 0.44 -0.4
31,236 + EX31_RS13855 0.44 -0.2
31,237 - EX31_RS13855 0.44 +0.7
31,266 + EX31_RS13855 0.46 +0.9
31,270 + EX31_RS13855 0.46 +1.1
31,270 + EX31_RS13855 0.46 -0.8
31,271 - EX31_RS13855 0.46 -1.1
31,271 - EX31_RS13855 0.46 +0.2
31,508 - EX31_RS13855 0.63 +1.3
31,581 + EX31_RS13855 0.69 -0.3
31,581 + EX31_RS13855 0.69 +0.7
31,581 + EX31_RS13855 0.69 -0.2
31,582 - EX31_RS13855 0.69 -0.8
31,583 + EX31_RS13855 0.69 -0.0
31,583 + EX31_RS13855 0.69 +0.1
31,584 - EX31_RS13855 0.69 +0.4
31,584 - EX31_RS13855 0.69 -1.0
31,584 - EX31_RS13855 0.69 -2.4
31,589 + EX31_RS13855 0.69 -1.1
31,591 + EX31_RS13855 0.70 +1.4
31,591 + EX31_RS13855 0.70 -0.0
31,591 + EX31_RS13855 0.70 +0.4
31,591 + EX31_RS13855 0.70 +0.1
31,592 - EX31_RS13855 0.70 -1.0
31,592 - EX31_RS13855 0.70 +0.7
31,592 - EX31_RS13855 0.70 +1.0
31,592 - EX31_RS13855 0.70 +0.2
31,604 + EX31_RS13855 0.70 -0.8
31,665 + EX31_RS13855 0.75 +0.1
31,668 - EX31_RS13855 0.75 +0.0
31,776 + EX31_RS13855 0.83 -0.5
31,777 - EX31_RS13855 0.83 +1.4
31,778 + EX31_RS13855 0.83 -0.8
31,779 - EX31_RS13855 0.83 -1.1
31,779 - EX31_RS13855 0.83 -1.4
31,800 + EX31_RS13855 0.85 +0.7
31,800 + EX31_RS13855 0.85 +0.7
31,800 + EX31_RS13855 0.85 -0.8
31,800 + EX31_RS13855 0.85 +0.3
31,800 + EX31_RS13855 0.85 -0.6
31,800 + EX31_RS13855 0.85 -1.4
31,800 + EX31_RS13855 0.85 -1.8
31,800 + EX31_RS13855 0.85 -0.0
31,800 + EX31_RS13855 0.85 -0.8
31,800 + EX31_RS13855 0.85 +0.4
31,800 + EX31_RS13855 0.85 -0.3
31,801 - EX31_RS13855 0.85 -0.2
31,801 - EX31_RS13855 0.85 -0.2
31,801 - EX31_RS13855 0.85 -0.6
31,801 - EX31_RS13855 0.85 +0.3
31,802 + EX31_RS13855 0.85 +0.3
31,803 - EX31_RS13855 0.85 +1.4
31,805 + EX31_RS13855 0.85 -0.6
31,805 + EX31_RS13855 0.85 -0.4
31,805 + EX31_RS13855 0.85 +1.2
31,806 - EX31_RS13855 0.85 -0.6
31,818 + EX31_RS13855 0.86 +0.0
31,845 + EX31_RS13855 0.88 +1.0
31,980 + +0.5
32,083 + +0.5
32,083 + +1.4
32,111 + -0.2
32,111 + -2.1
32,111 + -0.4
32,112 - -0.7
32,112 - +0.7
32,112 - +1.1
32,112 - -1.4
32,112 - -0.3
32,133 + -0.6
32,134 - +0.2
32,238 + +0.4
32,238 + +0.5
32,315 + +0.3
32,315 + +0.2
32,331 + +0.3
32,331 + -0.5
32,331 + +0.9
32,331 + +0.6
32,331 + +0.3
32,544 - +0.5
32,701 + +1.1
32,823 + -3.0
32,823 + +0.0
32,826 + +0.6
32,850 + +0.5
32,856 + -0.8
32,856 + -0.4

Or see this region's nucleotide sequence