Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS12660 and EX31_RS12665 are separated by 383 nucleotides EX31_RS12665 and EX31_RS12670 are separated by 190 nucleotides
EX31_RS12660: EX31_RS12660 - DedA family protein, at 200,880 to 201,560
_RS12660
EX31_RS12665: EX31_RS12665 - transcriptional regulator ExuR, at 201,944 to 202,720
_RS12665
EX31_RS12670: EX31_RS12670 - MFS transporter, at 202,911 to 204,203
_RS12670
Position (kb) 201
202
203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 201.002 kb on + strand, within EX31_RS12660 at 201.002 kb on + strand, within EX31_RS12660 at 201.002 kb on + strand, within EX31_RS12660 at 201.002 kb on + strand, within EX31_RS12660 at 201.002 kb on + strand, within EX31_RS12660 at 201.003 kb on - strand, within EX31_RS12660 at 201.003 kb on - strand, within EX31_RS12660 at 201.003 kb on - strand, within EX31_RS12660 at 201.010 kb on + strand, within EX31_RS12660 at 201.010 kb on + strand, within EX31_RS12660 at 201.011 kb on - strand, within EX31_RS12660 at 201.180 kb on + strand, within EX31_RS12660 at 201.181 kb on - strand, within EX31_RS12660 at 201.181 kb on - strand, within EX31_RS12660 at 201.204 kb on - strand, within EX31_RS12660 at 201.232 kb on + strand, within EX31_RS12660 at 201.232 kb on + strand, within EX31_RS12660 at 201.244 kb on - strand, within EX31_RS12660 at 201.264 kb on + strand, within EX31_RS12660 at 201.265 kb on - strand, within EX31_RS12660 at 201.265 kb on - strand, within EX31_RS12660 at 201.302 kb on - strand, within EX31_RS12660 at 201.302 kb on - strand, within EX31_RS12660 at 201.489 kb on + strand, within EX31_RS12660 at 201.646 kb on - strand at 201.697 kb on + strand at 201.698 kb on - strand at 201.750 kb on - strand at 201.763 kb on + strand at 201.763 kb on + strand at 201.769 kb on + strand at 201.770 kb on - strand at 201.782 kb on + strand at 201.782 kb on + strand at 201.782 kb on + strand at 201.782 kb on + strand at 201.783 kb on - strand at 201.783 kb on - strand at 201.783 kb on - strand at 201.783 kb on - strand at 201.783 kb on - strand at 201.783 kb on - strand at 201.783 kb on - strand at 201.786 kb on + strand at 201.786 kb on + strand at 201.786 kb on + strand at 201.786 kb on + strand at 201.786 kb on + strand at 201.787 kb on - strand at 201.787 kb on - strand at 201.787 kb on - strand at 201.788 kb on + strand at 201.788 kb on + strand at 201.789 kb on - strand at 201.811 kb on - strand at 201.841 kb on + strand at 201.841 kb on + strand at 201.857 kb on - strand at 201.946 kb on - strand at 201.946 kb on - strand at 201.950 kb on - strand at 201.997 kb on - strand at 202.011 kb on - strand at 202.011 kb on - strand at 202.124 kb on + strand, within EX31_RS12665 at 202.205 kb on - strand, within EX31_RS12665 at 202.290 kb on - strand, within EX31_RS12665 at 202.403 kb on - strand, within EX31_RS12665 at 202.403 kb on - strand, within EX31_RS12665 at 202.403 kb on - strand, within EX31_RS12665 at 202.403 kb on - strand, within EX31_RS12665 at 202.403 kb on - strand, within EX31_RS12665 at 202.428 kb on - strand, within EX31_RS12665 at 202.428 kb on - strand, within EX31_RS12665 at 202.539 kb on + strand, within EX31_RS12665 at 202.539 kb on + strand, within EX31_RS12665 at 202.539 kb on + strand, within EX31_RS12665 at 202.539 kb on + strand, within EX31_RS12665 at 202.540 kb on - strand, within EX31_RS12665 at 202.540 kb on - strand, within EX31_RS12665 at 202.540 kb on - strand, within EX31_RS12665 at 202.562 kb on - strand, within EX31_RS12665 at 202.562 kb on - strand, within EX31_RS12665 at 202.644 kb on + strand at 202.692 kb on + strand at 202.692 kb on + strand at 202.692 kb on + strand at 202.694 kb on + strand at 202.694 kb on + strand at 202.694 kb on + strand at 202.694 kb on + strand at 202.694 kb on + strand at 202.694 kb on + strand at 202.694 kb on + strand at 202.694 kb on + strand at 202.694 kb on + strand at 202.695 kb on - strand at 202.695 kb on - strand at 202.695 kb on - strand at 202.695 kb on - strand at 202.721 kb on - strand at 202.721 kb on - strand at 202.733 kb on + strand at 202.734 kb on - strand at 202.734 kb on - strand at 202.734 kb on - strand at 202.734 kb on - strand at 202.738 kb on + strand at 202.739 kb on - strand at 202.739 kb on - strand at 202.750 kb on + strand at 202.782 kb on + strand at 202.782 kb on + strand at 202.783 kb on - strand at 202.786 kb on - strand at 202.787 kb on + strand at 202.787 kb on + strand at 202.787 kb on + strand at 202.787 kb on + strand at 202.787 kb on + strand at 202.787 kb on + strand at 202.787 kb on + strand at 202.787 kb on + strand at 202.788 kb on - strand at 202.788 kb on - strand at 202.788 kb on - strand at 202.788 kb on - strand at 202.788 kb on - strand at 202.788 kb on - strand at 202.800 kb on - strand at 202.801 kb on + strand at 202.801 kb on + strand at 202.801 kb on + strand at 202.801 kb on + strand at 202.801 kb on + strand at 202.801 kb on + strand at 202.801 kb on + strand at 202.801 kb on + strand at 202.802 kb on - strand at 202.802 kb on - strand at 202.802 kb on - strand at 202.802 kb on - strand at 202.802 kb on - strand at 202.890 kb on - strand at 202.913 kb on - strand at 202.913 kb on - strand at 202.930 kb on - strand at 202.950 kb on + strand at 202.950 kb on + strand at 202.951 kb on - strand at 202.951 kb on - strand at 203.081 kb on + strand, within EX31_RS12670 at 203.081 kb on + strand, within EX31_RS12670 at 203.081 kb on + strand, within EX31_RS12670 at 203.081 kb on + strand, within EX31_RS12670 at 203.081 kb on + strand, within EX31_RS12670 at 203.081 kb on + strand, within EX31_RS12670 at 203.081 kb on + strand, within EX31_RS12670 at 203.081 kb on + strand, within EX31_RS12670 at 203.081 kb on + strand, within EX31_RS12670 at 203.081 kb on + strand, within EX31_RS12670 at 203.081 kb on + strand, within EX31_RS12670 at 203.082 kb on - strand, within EX31_RS12670 at 203.082 kb on - strand, within EX31_RS12670 at 203.082 kb on - strand, within EX31_RS12670 at 203.082 kb on - strand, within EX31_RS12670 at 203.082 kb on - strand, within EX31_RS12670 at 203.082 kb on - strand, within EX31_RS12670 at 203.082 kb on - strand, within EX31_RS12670 at 203.082 kb on - strand, within EX31_RS12670 at 203.082 kb on - strand, within EX31_RS12670 at 203.082 kb on - strand, within EX31_RS12670 at 203.082 kb on - strand, within EX31_RS12670 at 203.208 kb on + strand, within EX31_RS12670 at 203.208 kb on + strand, within EX31_RS12670 at 203.208 kb on + strand, within EX31_RS12670 at 203.208 kb on + strand, within EX31_RS12670 at 203.208 kb on + strand, within EX31_RS12670 at 203.208 kb on + strand, within EX31_RS12670 at 203.208 kb on + strand, within EX31_RS12670 at 203.208 kb on + strand, within EX31_RS12670 at 203.209 kb on - strand, within EX31_RS12670 at 203.209 kb on - strand, within EX31_RS12670 at 203.209 kb on - strand, within EX31_RS12670 at 203.209 kb on - strand, within EX31_RS12670 at 203.209 kb on - strand, within EX31_RS12670 at 203.209 kb on - strand, within EX31_RS12670 at 203.209 kb on - strand, within EX31_RS12670 at 203.209 kb on - strand, within EX31_RS12670 at 203.209 kb on - strand, within EX31_RS12670 at 203.209 kb on - strand, within EX31_RS12670 at 203.209 kb on - strand, within EX31_RS12670 at 203.209 kb on - strand, within EX31_RS12670 at 203.219 kb on + strand, within EX31_RS12670 at 203.228 kb on - strand, within EX31_RS12670 at 203.315 kb on + strand, within EX31_RS12670 at 203.316 kb on - strand, within EX31_RS12670 at 203.316 kb on - strand, within EX31_RS12670 at 203.316 kb on - strand, within EX31_RS12670 at 203.326 kb on + strand, within EX31_RS12670 at 203.326 kb on + strand, within EX31_RS12670 at 203.326 kb on + strand, within EX31_RS12670 at 203.326 kb on + strand, within EX31_RS12670 at 203.327 kb on - strand, within EX31_RS12670 at 203.327 kb on - strand, within EX31_RS12670 at 203.327 kb on - strand, within EX31_RS12670 at 203.364 kb on - strand, within EX31_RS12670 at 203.431 kb on + strand, within EX31_RS12670 at 203.431 kb on + strand, within EX31_RS12670 at 203.431 kb on + strand, within EX31_RS12670 at 203.602 kb on + strand, within EX31_RS12670 at 203.602 kb on + strand, within EX31_RS12670 at 203.602 kb on + strand, within EX31_RS12670 at 203.602 kb on + strand, within EX31_RS12670 at 203.602 kb on + strand, within EX31_RS12670 at 203.602 kb on + strand, within EX31_RS12670 at 203.602 kb on + strand, within EX31_RS12670 at 203.602 kb on + strand, within EX31_RS12670 at 203.603 kb on - strand, within EX31_RS12670 at 203.603 kb on - strand, within EX31_RS12670 at 203.639 kb on + strand, within EX31_RS12670 at 203.648 kb on + strand, within EX31_RS12670 at 203.648 kb on + strand, within EX31_RS12670 at 203.648 kb on + strand, within EX31_RS12670 at 203.649 kb on - strand, within EX31_RS12670 at 203.650 kb on + strand, within EX31_RS12670 at 203.650 kb on + strand, within EX31_RS12670 at 203.650 kb on + strand, within EX31_RS12670 at 203.650 kb on + strand, within EX31_RS12670 at 203.651 kb on - strand, within EX31_RS12670 at 203.651 kb on - strand, within EX31_RS12670 at 203.651 kb on - strand, within EX31_RS12670 at 203.651 kb on - strand, within EX31_RS12670 at 203.651 kb on - strand, within EX31_RS12670 at 203.651 kb on - strand, within EX31_RS12670 at 203.651 kb on - strand, within EX31_RS12670 at 203.689 kb on - strand, within EX31_RS12670 at 203.720 kb on + strand, within EX31_RS12670 at 203.720 kb on + strand, within EX31_RS12670 at 203.720 kb on + strand, within EX31_RS12670 at 203.720 kb on + strand, within EX31_RS12670 at 203.720 kb on + strand, within EX31_RS12670
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 201,002 + EX31_RS12660 0.18 +0.7 201,002 + EX31_RS12660 0.18 +0.8 201,002 + EX31_RS12660 0.18 +1.2 201,002 + EX31_RS12660 0.18 +0.2 201,002 + EX31_RS12660 0.18 +1.1 201,003 - EX31_RS12660 0.18 -1.1 201,003 - EX31_RS12660 0.18 -0.4 201,003 - EX31_RS12660 0.18 +0.2 201,010 + EX31_RS12660 0.19 +0.0 201,010 + EX31_RS12660 0.19 +0.7 201,011 - EX31_RS12660 0.19 +0.7 201,180 + EX31_RS12660 0.44 +0.9 201,181 - EX31_RS12660 0.44 +1.5 201,181 - EX31_RS12660 0.44 +0.1 201,204 - EX31_RS12660 0.48 -1.0 201,232 + EX31_RS12660 0.52 +0.9 201,232 + EX31_RS12660 0.52 -0.6 201,244 - EX31_RS12660 0.53 +0.2 201,264 + EX31_RS12660 0.56 +0.1 201,265 - EX31_RS12660 0.57 -0.1 201,265 - EX31_RS12660 0.57 +0.0 201,302 - EX31_RS12660 0.62 +0.2 201,302 - EX31_RS12660 0.62 +0.3 201,489 + EX31_RS12660 0.89 +0.3 201,646 - -0.4 201,697 + +0.2 201,698 - +0.0 201,750 - -0.3 201,763 + +0.5 201,763 + -0.1 201,769 + +0.2 201,770 - -1.4 201,782 + +0.1 201,782 + +0.5 201,782 + -0.0 201,782 + +0.2 201,783 - -1.1 201,783 - -0.8 201,783 - +0.1 201,783 - +1.6 201,783 - -0.4 201,783 - +0.5 201,783 - -0.6 201,786 + +0.6 201,786 + +0.6 201,786 + +1.1 201,786 + -0.4 201,786 + -0.3 201,787 - +0.1 201,787 - -0.6 201,787 - -0.6 201,788 + +0.1 201,788 + +0.0 201,789 - -0.5 201,811 - -1.4 201,841 + +0.4 201,841 + +0.4 201,857 - +0.1 201,946 - +0.5 201,946 - -0.3 201,950 - +0.1 201,997 - +0.3 202,011 - -0.4 202,011 - +0.2 202,124 + EX31_RS12665 0.23 -2.2 202,205 - EX31_RS12665 0.34 -0.5 202,290 - EX31_RS12665 0.45 -1.6 202,403 - EX31_RS12665 0.59 -0.5 202,403 - EX31_RS12665 0.59 -0.7 202,403 - EX31_RS12665 0.59 -1.8 202,403 - EX31_RS12665 0.59 -1.3 202,403 - EX31_RS12665 0.59 -1.0 202,428 - EX31_RS12665 0.62 -1.0 202,428 - EX31_RS12665 0.62 -0.6 202,539 + EX31_RS12665 0.77 -1.0 202,539 + EX31_RS12665 0.77 -1.2 202,539 + EX31_RS12665 0.77 -2.0 202,539 + EX31_RS12665 0.77 -0.7 202,540 - EX31_RS12665 0.77 -1.0 202,540 - EX31_RS12665 0.77 -0.2 202,540 - EX31_RS12665 0.77 -0.1 202,562 - EX31_RS12665 0.80 -0.6 202,562 - EX31_RS12665 0.80 -0.0 202,644 + -1.2 202,692 + -0.8 202,692 + -3.0 202,692 + +0.0 202,694 + -1.5 202,694 + -1.7 202,694 + -0.9 202,694 + -0.8 202,694 + -1.0 202,694 + -0.2 202,694 + -1.1 202,694 + -1.3 202,694 + -0.9 202,695 - -0.1 202,695 - -1.2 202,695 - -0.5 202,695 - -0.4 202,721 - -0.9 202,721 - -0.2 202,733 + -0.8 202,734 - +1.4 202,734 - +1.5 202,734 - -0.1 202,734 - +0.5 202,738 + -1.5 202,739 - +0.2 202,739 - -0.2 202,750 + -1.2 202,782 + -1.8 202,782 + -1.4 202,783 - +1.7 202,786 - +0.0 202,787 + -0.1 202,787 + -0.7 202,787 + +0.6 202,787 + +0.8 202,787 + +0.3 202,787 + +1.4 202,787 + +0.2 202,787 + -0.7 202,788 - +0.3 202,788 - -0.1 202,788 - +0.4 202,788 - +0.3 202,788 - +0.3 202,788 - -0.2 202,800 - -0.4 202,801 + +1.3 202,801 + -0.3 202,801 + +0.7 202,801 + +0.2 202,801 + -0.2 202,801 + -0.8 202,801 + -0.4 202,801 + -0.0 202,802 - -0.3 202,802 - -0.1 202,802 - -0.4 202,802 - +0.0 202,802 - +0.3 202,890 - -0.5 202,913 - +0.2 202,913 - -0.2 202,930 - +0.0 202,950 + -0.1 202,950 + -0.3 202,951 - -0.2 202,951 - +0.7 203,081 + EX31_RS12670 0.13 -0.5 203,081 + EX31_RS12670 0.13 -2.9 203,081 + EX31_RS12670 0.13 +0.8 203,081 + EX31_RS12670 0.13 -0.1 203,081 + EX31_RS12670 0.13 +2.3 203,081 + EX31_RS12670 0.13 +1.3 203,081 + EX31_RS12670 0.13 -0.8 203,081 + EX31_RS12670 0.13 -0.9 203,081 + EX31_RS12670 0.13 +0.6 203,081 + EX31_RS12670 0.13 -0.1 203,081 + EX31_RS12670 0.13 +0.2 203,082 - EX31_RS12670 0.13 +0.4 203,082 - EX31_RS12670 0.13 +1.2 203,082 - EX31_RS12670 0.13 +0.2 203,082 - EX31_RS12670 0.13 -0.8 203,082 - EX31_RS12670 0.13 +0.9 203,082 - EX31_RS12670 0.13 -2.0 203,082 - EX31_RS12670 0.13 +0.3 203,082 - EX31_RS12670 0.13 -0.9 203,082 - EX31_RS12670 0.13 +0.8 203,082 - EX31_RS12670 0.13 -0.3 203,082 - EX31_RS12670 0.13 -0.3 203,208 + EX31_RS12670 0.23 -0.6 203,208 + EX31_RS12670 0.23 +0.0 203,208 + EX31_RS12670 0.23 -0.1 203,208 + EX31_RS12670 0.23 -0.6 203,208 + EX31_RS12670 0.23 -0.1 203,208 + EX31_RS12670 0.23 -0.6 203,208 + EX31_RS12670 0.23 +0.1 203,208 + EX31_RS12670 0.23 -0.6 203,209 - EX31_RS12670 0.23 -0.3 203,209 - EX31_RS12670 0.23 -0.1 203,209 - EX31_RS12670 0.23 +0.3 203,209 - EX31_RS12670 0.23 +1.0 203,209 - EX31_RS12670 0.23 +0.3 203,209 - EX31_RS12670 0.23 -0.1 203,209 - EX31_RS12670 0.23 +0.6 203,209 - EX31_RS12670 0.23 +0.5 203,209 - EX31_RS12670 0.23 +0.2 203,209 - EX31_RS12670 0.23 -0.7 203,209 - EX31_RS12670 0.23 -0.5 203,209 - EX31_RS12670 0.23 +0.3 203,219 + EX31_RS12670 0.24 +0.2 203,228 - EX31_RS12670 0.25 -0.1 203,315 + EX31_RS12670 0.31 +0.4 203,316 - EX31_RS12670 0.31 +0.7 203,316 - EX31_RS12670 0.31 +0.2 203,316 - EX31_RS12670 0.31 +0.1 203,326 + EX31_RS12670 0.32 -0.1 203,326 + EX31_RS12670 0.32 +0.1 203,326 + EX31_RS12670 0.32 -0.0 203,326 + EX31_RS12670 0.32 -0.2 203,327 - EX31_RS12670 0.32 +0.3 203,327 - EX31_RS12670 0.32 +0.2 203,327 - EX31_RS12670 0.32 +0.4 203,364 - EX31_RS12670 0.35 +1.3 203,431 + EX31_RS12670 0.40 -1.6 203,431 + EX31_RS12670 0.40 -0.5 203,431 + EX31_RS12670 0.40 -0.4 203,602 + EX31_RS12670 0.53 +0.0 203,602 + EX31_RS12670 0.53 -0.1 203,602 + EX31_RS12670 0.53 -0.0 203,602 + EX31_RS12670 0.53 +0.2 203,602 + EX31_RS12670 0.53 -0.7 203,602 + EX31_RS12670 0.53 +0.5 203,602 + EX31_RS12670 0.53 +0.0 203,602 + EX31_RS12670 0.53 +0.5 203,603 - EX31_RS12670 0.54 -0.4 203,603 - EX31_RS12670 0.54 +0.3 203,639 + EX31_RS12670 0.56 +0.8 203,648 + EX31_RS12670 0.57 +0.2 203,648 + EX31_RS12670 0.57 -1.2 203,648 + EX31_RS12670 0.57 +0.6 203,649 - EX31_RS12670 0.57 +0.0 203,650 + EX31_RS12670 0.57 +0.0 203,650 + EX31_RS12670 0.57 -0.0 203,650 + EX31_RS12670 0.57 +0.6 203,650 + EX31_RS12670 0.57 +0.4 203,651 - EX31_RS12670 0.57 -0.0 203,651 - EX31_RS12670 0.57 -0.1 203,651 - EX31_RS12670 0.57 -0.0 203,651 - EX31_RS12670 0.57 +0.1 203,651 - EX31_RS12670 0.57 +0.1 203,651 - EX31_RS12670 0.57 +0.0 203,651 - EX31_RS12670 0.57 +0.4 203,689 - EX31_RS12670 0.60 -0.1 203,720 + EX31_RS12670 0.63 +0.9 203,720 + EX31_RS12670 0.63 -0.2 203,720 + EX31_RS12670 0.63 -0.1 203,720 + EX31_RS12670 0.63 +1.1 203,720 + EX31_RS12670 0.63 -0.7
Or see this region's nucleotide sequence