Strain Fitness in Rahnella sp. WP5 around EX31_RS12345

Experiment: NL-CCM; high oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; high oxygen
138,280	+				+0.1
138,281	-				-1.5
138,281	-				+0.0
138,317	-				-0.3
138,324	+				+0.6
138,325	-				-1.2
138,337	-				-1.4
138,346	+				+0.1
138,347	-				-0.3
138,347	-				-0.1
138,347	-				-0.3
138,347	-				-2.7
138,348	+				-0.1
138,348	+				+0.5
138,348	+				+0.4
138,349	-				-0.3
138,357	-				-0.5
138,396	+				+0.1
138,396	+				-0.3
138,397	-				+0.5
138,397	-				-0.4
138,456	-				-0.2
138,470	+				-1.1
138,471	-				-0.4
138,582	-		EX31_RS12335	0.19	+0.4
138,593	+		EX31_RS12335	0.22	+0.6
138,593	+		EX31_RS12335	0.22	+0.5
138,593	+		EX31_RS12335	0.22	+0.5
138,594	-		EX31_RS12335	0.22	+0.5
138,630	+		EX31_RS12335	0.32	+1.0
138,630	+		EX31_RS12335	0.32	+0.1
138,631	-		EX31_RS12335	0.32	-0.3
138,631	-		EX31_RS12335	0.32	+0.4
138,634	+		EX31_RS12335	0.33	+0.7
138,634	+		EX31_RS12335	0.33	+0.8
138,634	+		EX31_RS12335	0.33	+1.0
138,634	+		EX31_RS12335	0.33	+0.8
138,634	+		EX31_RS12335	0.33	+0.1
138,634	+		EX31_RS12335	0.33	+1.2
138,634	+		EX31_RS12335	0.33	-0.7
138,634	+		EX31_RS12335	0.33	-0.2
138,634	+		EX31_RS12335	0.33	+0.6
138,636	+		EX31_RS12335	0.34	+1.2
138,687	-		EX31_RS12335	0.48	+0.9
138,689	+		EX31_RS12335	0.49	+0.7
138,689	+		EX31_RS12335	0.49	+1.0
138,699	+		EX31_RS12335	0.52	+1.2
138,817	+		EX31_RS12335	0.85	+0.3
138,818	-		EX31_RS12335	0.86	-1.3
138,818	-		EX31_RS12335	0.86	-0.8
138,852	+				+0.6
138,853	-				-0.9
138,853	-				-0.5
138,861	+				-1.3
138,861	+				-0.5
138,861	+				+1.0
138,861	+				+0.4
138,861	+				+0.3
138,866	-				+0.6
138,892	+				-0.7
138,893	-				-0.6
138,893	-				+0.6
138,893	-				-1.3
138,924	+				+0.1
138,924	+				+0.6
138,924	+				-0.8
138,924	+				+0.7
138,924	+				+1.0
138,924	+				+2.6
138,924	+				+0.8
138,924	+				+1.1
138,924	+				+0.2
138,924	+				+1.1
138,925	-				+0.7
138,925	-				-1.1
138,928	-				-2.1
138,928	-				+0.9
138,949	-				-2.2
139,027	+		EX31_RS12340	0.31	+1.7
139,027	+		EX31_RS12340	0.31	+0.7
139,027	+		EX31_RS12340	0.31	+1.3
139,027	+		EX31_RS12340	0.31	+0.3
139,028	-		EX31_RS12340	0.31	-0.5
139,072	+		EX31_RS12340	0.43	+0.8
139,072	+		EX31_RS12340	0.43	+0.6
139,124	+		EX31_RS12340	0.57	+1.2
139,125	-		EX31_RS12340	0.58	-1.2
139,130	+		EX31_RS12340	0.59	-0.1
139,131	-		EX31_RS12340	0.59	+1.1
139,132	+		EX31_RS12340	0.60	+0.7
139,132	+		EX31_RS12340	0.60	+1.5
139,133	-		EX31_RS12340	0.60	-0.7
139,133	-		EX31_RS12340	0.60	-1.9
139,133	-		EX31_RS12340	0.60	-0.9
139,138	+		EX31_RS12340	0.61	+0.7
139,138	+		EX31_RS12340	0.61	+0.9
139,180	+		EX31_RS12340	0.73	+1.1
139,181	-		EX31_RS12340	0.73	-0.3
139,194	+		EX31_RS12340	0.77	+0.7
139,194	+		EX31_RS12340	0.77	+1.1
139,195	-		EX31_RS12340	0.77	+0.2
139,200	+		EX31_RS12340	0.78	+1.2
139,213	+		EX31_RS12340	0.82	+0.6
139,253	+				+0.4
139,253	+				+0.7
139,253	+				+0.4
139,253	+				+1.3
139,255	+				-0.0
139,255	+				+0.0
139,255	+				+0.0
139,265	+				+0.2
139,266	-				-0.9
139,266	-				-0.7
139,266	-				+0.8
139,292	+				-0.9
139,403	+		EX31_RS12345	0.41	+0.5
139,403	+		EX31_RS12345	0.41	-0.8
139,403	+		EX31_RS12345	0.41	+0.1
139,412	+		EX31_RS12345	0.44	-0.8
139,412	+		EX31_RS12345	0.44	-0.4
139,413	-		EX31_RS12345	0.45	-1.0
139,433	+		EX31_RS12345	0.51	-1.2
139,433	+		EX31_RS12345	0.51	+0.1
139,436	+		EX31_RS12345	0.52	-0.3
139,504	+		EX31_RS12345	0.75	-1.0
139,590	-				+0.2
139,590	-				+0.1
139,592	-				+1.2
139,604	+				+0.5
139,605	-				+0.3
139,606	+				-1.3
139,606	+				+0.2
139,606	+				-1.2
139,607	-				+1.0
139,607	-				-1.6
139,607	-				-1.5
139,611	-				-1.3
139,627	+				+0.1
139,669	+				-0.2
139,669	+				+0.1
139,688	+				-0.1
139,688	+				-0.2
139,688	+				-0.1
139,688	+				-0.7
139,688	+				+0.4
139,688	+				+0.2
139,689	-		EX31_RS12350	0.10	-0.1
139,689	-		EX31_RS12350	0.10	+0.4
139,689	-		EX31_RS12350	0.10	-1.6
139,744	+		EX31_RS12350	0.17	+1.1
139,745	-		EX31_RS12350	0.17	-1.3
139,896	-		EX31_RS12350	0.37	-0.9
139,992	-		EX31_RS12350	0.49	+0.5
139,992	-		EX31_RS12350	0.49	+0.3
140,139	-		EX31_RS12350	0.68	+1.7
140,139	-		EX31_RS12350	0.68	+0.2
140,385	+				+1.2
140,385	+				-0.2
140,385	+				-0.5
140,385	+				-0.6
140,385	+				-0.4
140,385	+				+0.4
140,385	+				+0.0
140,386	-				-0.8
140,386	-				+0.3
140,386	-				+0.1
140,500	+		EX31_RS12355	0.15	-0.6
140,500	+		EX31_RS12355	0.15	+0.4
140,500	+		EX31_RS12355	0.15	-0.6
140,500	+		EX31_RS12355	0.15	-2.1
140,500	+		EX31_RS12355	0.15	+0.0
140,500	+		EX31_RS12355	0.15	-0.6
140,500	+		EX31_RS12355	0.15	+0.2
140,500	+		EX31_RS12355	0.15	-1.1
140,500	+		EX31_RS12355	0.15	-0.0
140,500	+		EX31_RS12355	0.15	+0.2
140,500	+		EX31_RS12355	0.15	+0.3
140,500	+		EX31_RS12355	0.15	+0.8
140,500	+		EX31_RS12355	0.15	+0.7
140,500	+		EX31_RS12355	0.15	+0.4
140,500	+		EX31_RS12355	0.15	+0.3
140,500	+		EX31_RS12355	0.15	+1.3
140,500	+		EX31_RS12355	0.15	+0.4
140,500	+		EX31_RS12355	0.15	-0.7
140,500	+		EX31_RS12355	0.15	-1.2
140,500	+		EX31_RS12355	0.15	-0.3
140,500	+		EX31_RS12355	0.15	-0.7
140,500	+		EX31_RS12355	0.15	-0.6
140,500	+		EX31_RS12355	0.15	+0.1
140,500	+		EX31_RS12355	0.15	-0.2
140,500	+		EX31_RS12355	0.15	+0.7
140,500	+		EX31_RS12355	0.15	+0.3
140,501	-		EX31_RS12355	0.15	+0.4
140,501	-		EX31_RS12355	0.15	-1.0
140,501	-		EX31_RS12355	0.15	+0.0
140,501	-		EX31_RS12355	0.15	-0.1
140,501	-		EX31_RS12355	0.15	+0.4
140,501	-		EX31_RS12355	0.15	-0.2
140,501	-		EX31_RS12355	0.15	-0.3
140,501	-		EX31_RS12355	0.15	-0.4
140,501	-		EX31_RS12355	0.15	-0.9
140,501	-		EX31_RS12355	0.15	-0.1
140,501	-		EX31_RS12355	0.15	+0.7
140,501	-		EX31_RS12355	0.15	-1.1
140,501	-		EX31_RS12355	0.15	-0.4
140,501	-		EX31_RS12355	0.15	-1.4
140,501	-		EX31_RS12355	0.15	-1.0
140,501	-		EX31_RS12355	0.15	-0.2
140,501	-		EX31_RS12355	0.15	-0.3
140,501	-		EX31_RS12355	0.15	-0.0
140,501	-		EX31_RS12355	0.15	-0.3
140,501	-		EX31_RS12355	0.15	-0.6
140,501	-		EX31_RS12355	0.15	+0.4
140,501	-		EX31_RS12355	0.15	+0.5
140,501	-		EX31_RS12355	0.15	-0.0
140,501	-		EX31_RS12355	0.15	+0.3
140,501	-		EX31_RS12355	0.15	-0.8
140,501	-		EX31_RS12355	0.15	-0.3
140,501	-		EX31_RS12355	0.15	-1.1
140,501	-		EX31_RS12355	0.15	+0.7
140,501	-		EX31_RS12355	0.15	-0.0
140,501	-		EX31_RS12355	0.15	-0.3
140,501	-		EX31_RS12355	0.15	-0.2
140,501	-		EX31_RS12355	0.15	+0.1
140,501	-		EX31_RS12355	0.15	-0.5
140,501	-		EX31_RS12355	0.15	-0.3
140,501	-		EX31_RS12355	0.15	-2.2
140,503	+		EX31_RS12355	0.16	+0.4
140,503	+		EX31_RS12355	0.16	+0.2
140,503	+		EX31_RS12355	0.16	-0.6
140,503	+		EX31_RS12355	0.16	+0.2
140,503	+		EX31_RS12355	0.16	+0.3
140,503	+		EX31_RS12355	0.16	-0.3
140,504	-		EX31_RS12355	0.16	-0.3
140,504	-		EX31_RS12355	0.16	-0.0
140,509	+		EX31_RS12355	0.17	-0.5
140,509	+		EX31_RS12355	0.17	-0.1
140,509	+		EX31_RS12355	0.17	+0.3
140,509	+		EX31_RS12355	0.17	+1.4
140,510	-		EX31_RS12355	0.17	+0.9
140,526	+		EX31_RS12355	0.19	+0.6
140,543	+		EX31_RS12355	0.22	+0.2
140,543	+		EX31_RS12355	0.22	+0.2
140,544	-		EX31_RS12355	0.22	-1.0
140,544	-		EX31_RS12355	0.22	-0.7
140,544	-		EX31_RS12355	0.22	+0.0
140,544	-		EX31_RS12355	0.22	-0.3
140,578	+		EX31_RS12355	0.27	-0.7