Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11485 and EX31_RS11490 overlap by 4 nucleotides EX31_RS11490 and EX31_RS11495 are separated by 69 nucleotides
EX31_RS11485: EX31_RS11485 - ABC transporter ATP-binding protein, at 231,112 to 232,503
_RS11485
EX31_RS11490: EX31_RS11490 - glycosyltransferase, at 232,500 to 236,135
_RS11490
EX31_RS11495: EX31_RS11495 - glycosyltransferase family 2 protein, at 236,205 to 237,101
_RS11495
Position (kb) 232
233
234
235
236
237 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 231.502 kb on + strand, within EX31_RS11485 at 231.502 kb on + strand, within EX31_RS11485 at 231.502 kb on + strand, within EX31_RS11485 at 231.502 kb on + strand, within EX31_RS11485 at 231.527 kb on + strand, within EX31_RS11485 at 231.527 kb on + strand, within EX31_RS11485 at 231.527 kb on + strand, within EX31_RS11485 at 231.628 kb on + strand, within EX31_RS11485 at 231.628 kb on + strand, within EX31_RS11485 at 231.628 kb on + strand, within EX31_RS11485 at 231.713 kb on + strand, within EX31_RS11485 at 231.880 kb on + strand, within EX31_RS11485 at 231.880 kb on + strand, within EX31_RS11485 at 231.907 kb on + strand, within EX31_RS11485 at 231.987 kb on + strand, within EX31_RS11485 at 231.987 kb on + strand, within EX31_RS11485 at 231.998 kb on + strand, within EX31_RS11485 at 231.998 kb on + strand, within EX31_RS11485 at 232.102 kb on + strand, within EX31_RS11485 at 232.102 kb on + strand, within EX31_RS11485 at 232.104 kb on + strand, within EX31_RS11485 at 232.104 kb on + strand, within EX31_RS11485 at 232.126 kb on + strand, within EX31_RS11485 at 232.126 kb on + strand, within EX31_RS11485 at 232.126 kb on + strand, within EX31_RS11485 at 232.203 kb on + strand, within EX31_RS11485 at 232.419 kb on + strand at 232.424 kb on + strand at 232.575 kb on + strand at 232.859 kb on + strand at 232.910 kb on + strand, within EX31_RS11490 at 232.931 kb on + strand, within EX31_RS11490 at 233.276 kb on + strand, within EX31_RS11490 at 233.285 kb on + strand, within EX31_RS11490 at 233.285 kb on + strand, within EX31_RS11490 at 233.377 kb on + strand, within EX31_RS11490 at 233.377 kb on + strand, within EX31_RS11490 at 233.420 kb on + strand, within EX31_RS11490 at 233.420 kb on + strand, within EX31_RS11490 at 233.420 kb on + strand, within EX31_RS11490 at 233.790 kb on + strand, within EX31_RS11490 at 234.078 kb on + strand, within EX31_RS11490 at 234.200 kb on + strand, within EX31_RS11490 at 234.311 kb on + strand, within EX31_RS11490 at 234.401 kb on + strand, within EX31_RS11490 at 234.860 kb on + strand, within EX31_RS11490 at 235.223 kb on + strand, within EX31_RS11490 at 235.347 kb on + strand, within EX31_RS11490 at 235.567 kb on + strand, within EX31_RS11490 at 235.946 kb on + strand at 236.197 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 231,502 + EX31_RS11485 0.28 -1.5 231,502 + EX31_RS11485 0.28 -0.7 231,502 + EX31_RS11485 0.28 -0.0 231,502 + EX31_RS11485 0.28 -0.7 231,527 + EX31_RS11485 0.30 -1.9 231,527 + EX31_RS11485 0.30 +0.1 231,527 + EX31_RS11485 0.30 -0.8 231,628 + EX31_RS11485 0.37 +0.0 231,628 + EX31_RS11485 0.37 +0.5 231,628 + EX31_RS11485 0.37 -1.4 231,713 + EX31_RS11485 0.43 -0.3 231,880 + EX31_RS11485 0.55 +0.0 231,880 + EX31_RS11485 0.55 +0.4 231,907 + EX31_RS11485 0.57 -0.9 231,987 + EX31_RS11485 0.63 -0.7 231,987 + EX31_RS11485 0.63 -1.8 231,998 + EX31_RS11485 0.64 -1.3 231,998 + EX31_RS11485 0.64 -0.8 232,102 + EX31_RS11485 0.71 -0.6 232,102 + EX31_RS11485 0.71 -0.7 232,104 + EX31_RS11485 0.71 -1.0 232,104 + EX31_RS11485 0.71 -2.6 232,126 + EX31_RS11485 0.73 +0.4 232,126 + EX31_RS11485 0.73 +0.0 232,126 + EX31_RS11485 0.73 -1.3 232,203 + EX31_RS11485 0.78 +0.4 232,419 + -0.5 232,424 + -1.7 232,575 + -2.9 232,859 + -0.6 232,910 + EX31_RS11490 0.11 +0.0 232,931 + EX31_RS11490 0.12 +1.3 233,276 + EX31_RS11490 0.21 -0.8 233,285 + EX31_RS11490 0.22 -0.3 233,285 + EX31_RS11490 0.22 +0.1 233,377 + EX31_RS11490 0.24 -2.1 233,377 + EX31_RS11490 0.24 +0.5 233,420 + EX31_RS11490 0.25 -0.0 233,420 + EX31_RS11490 0.25 -1.0 233,420 + EX31_RS11490 0.25 -0.9 233,790 + EX31_RS11490 0.35 -1.3 234,078 + EX31_RS11490 0.43 -0.4 234,200 + EX31_RS11490 0.47 -0.4 234,311 + EX31_RS11490 0.50 -0.4 234,401 + EX31_RS11490 0.52 -1.1 234,860 + EX31_RS11490 0.65 -0.1 235,223 + EX31_RS11490 0.75 -2.6 235,347 + EX31_RS11490 0.78 +0.9 235,567 + EX31_RS11490 0.84 -1.5 235,946 + -1.0 236,197 - +0.5
Or see this region's nucleotide sequence