Strain Fitness in Rahnella sp. WP5 around EX31_RS11180

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11175 and EX31_RS11180 are separated by 162 nucleotidesEX31_RS11180 and EX31_RS11185 are separated by 192 nucleotides EX31_RS11175: EX31_RS11175 - LysR family transcriptional regulator, at 167,760 to 168,647 _RS11175 EX31_RS11180: EX31_RS11180 - acyltransferase, at 168,810 to 170,024 _RS11180 EX31_RS11185: EX31_RS11185 - MBL fold metallo-hydrolase, at 170,217 to 171,053 _RS11185 Position (kb) 168 169 170 171Strain fitness (log2 ratio) -2 -1 0 1 2at 167.812 kb on + strandat 167.852 kb on + strand, within EX31_RS11175at 167.883 kb on - strand, within EX31_RS11175at 167.902 kb on + strand, within EX31_RS11175at 167.947 kb on + strand, within EX31_RS11175at 167.947 kb on + strand, within EX31_RS11175at 167.947 kb on + strand, within EX31_RS11175at 167.948 kb on - strand, within EX31_RS11175at 167.948 kb on - strand, within EX31_RS11175at 167.972 kb on - strand, within EX31_RS11175at 168.033 kb on - strand, within EX31_RS11175at 168.066 kb on + strand, within EX31_RS11175at 168.068 kb on + strand, within EX31_RS11175at 168.091 kb on + strand, within EX31_RS11175at 168.120 kb on - strand, within EX31_RS11175at 168.137 kb on + strand, within EX31_RS11175at 168.226 kb on + strand, within EX31_RS11175at 168.229 kb on + strand, within EX31_RS11175at 168.254 kb on + strand, within EX31_RS11175at 168.254 kb on + strand, within EX31_RS11175at 168.254 kb on + strand, within EX31_RS11175at 168.352 kb on - strand, within EX31_RS11175at 168.352 kb on - strand, within EX31_RS11175at 168.352 kb on - strand, within EX31_RS11175at 168.353 kb on + strand, within EX31_RS11175at 168.494 kb on + strand, within EX31_RS11175at 168.495 kb on - strand, within EX31_RS11175at 168.571 kb on - strandat 168.584 kb on + strandat 168.585 kb on - strandat 168.657 kb on - strandat 168.667 kb on + strandat 168.667 kb on + strandat 168.667 kb on + strandat 168.668 kb on - strandat 168.682 kb on - strandat 168.720 kb on + strandat 168.720 kb on + strandat 168.720 kb on + strandat 168.720 kb on + strandat 168.720 kb on + strandat 168.720 kb on + strandat 168.721 kb on - strandat 168.796 kb on + strandat 168.796 kb on + strandat 168.797 kb on - strandat 168.835 kb on - strandat 168.861 kb on + strandat 168.889 kb on + strandat 168.893 kb on + strandat 168.894 kb on - strandat 168.898 kb on - strandat 169.024 kb on + strand, within EX31_RS11180at 169.025 kb on - strand, within EX31_RS11180at 169.039 kb on - strand, within EX31_RS11180at 169.093 kb on - strand, within EX31_RS11180at 169.119 kb on + strand, within EX31_RS11180at 169.174 kb on + strand, within EX31_RS11180at 169.175 kb on - strand, within EX31_RS11180at 169.175 kb on - strand, within EX31_RS11180at 169.175 kb on - strand, within EX31_RS11180at 169.175 kb on - strand, within EX31_RS11180at 169.175 kb on - strand, within EX31_RS11180at 169.175 kb on - strand, within EX31_RS11180at 169.175 kb on - strand, within EX31_RS11180at 169.175 kb on - strand, within EX31_RS11180at 169.189 kb on + strand, within EX31_RS11180at 169.190 kb on - strand, within EX31_RS11180at 169.312 kb on + strand, within EX31_RS11180at 169.385 kb on + strand, within EX31_RS11180at 169.385 kb on + strand, within EX31_RS11180at 169.385 kb on + strand, within EX31_RS11180at 169.388 kb on - strand, within EX31_RS11180at 169.453 kb on - strand, within EX31_RS11180at 169.492 kb on + strand, within EX31_RS11180at 169.507 kb on - strand, within EX31_RS11180at 169.609 kb on + strand, within EX31_RS11180at 169.610 kb on - strand, within EX31_RS11180at 169.638 kb on + strand, within EX31_RS11180at 169.733 kb on + strand, within EX31_RS11180at 169.813 kb on - strand, within EX31_RS11180at 169.813 kb on - strand, within EX31_RS11180at 169.875 kb on + strand, within EX31_RS11180at 169.929 kb on + strandat 169.985 kb on + strandat 169.999 kb on - strandat 170.046 kb on - strandat 170.071 kb on + strandat 170.089 kb on - strandat 170.332 kb on - strand, within EX31_RS11185at 170.368 kb on + strand, within EX31_RS11185at 170.408 kb on + strand, within EX31_RS11185at 170.427 kb on - strand, within EX31_RS11185at 170.447 kb on + strand, within EX31_RS11185at 170.576 kb on + strand, within EX31_RS11185at 170.576 kb on + strand, within EX31_RS11185at 170.651 kb on + strand, within EX31_RS11185at 170.667 kb on + strand, within EX31_RS11185at 170.726 kb on + strand, within EX31_RS11185at 170.779 kb on - strand, within EX31_RS11185at 170.855 kb on + strand, within EX31_RS11185at 170.878 kb on - strand, within EX31_RS11185at 170.891 kb on + strand, within EX31_RS11185at 170.891 kb on + strand, within EX31_RS11185at 170.892 kb on - strand, within EX31_RS11185at 171.001 kb on - strandat 171.018 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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167,812 + +0.1
167,852 + EX31_RS11175 0.10 -0.3
167,883 - EX31_RS11175 0.14 +0.1
167,902 + EX31_RS11175 0.16 +1.1
167,947 + EX31_RS11175 0.21 +0.6
167,947 + EX31_RS11175 0.21 +0.0
167,947 + EX31_RS11175 0.21 -0.4
167,948 - EX31_RS11175 0.21 -1.8
167,948 - EX31_RS11175 0.21 -0.7
167,972 - EX31_RS11175 0.24 -1.6
168,033 - EX31_RS11175 0.31 -0.6
168,066 + EX31_RS11175 0.34 +0.6
168,068 + EX31_RS11175 0.35 -1.8
168,091 + EX31_RS11175 0.37 -0.4
168,120 - EX31_RS11175 0.41 +0.1
168,137 + EX31_RS11175 0.42 -1.7
168,226 + EX31_RS11175 0.52 -0.7
168,229 + EX31_RS11175 0.53 -1.3
168,254 + EX31_RS11175 0.56 -0.7
168,254 + EX31_RS11175 0.56 -0.9
168,254 + EX31_RS11175 0.56 +0.0
168,352 - EX31_RS11175 0.67 +0.2
168,352 - EX31_RS11175 0.67 -2.0
168,352 - EX31_RS11175 0.67 +0.3
168,353 + EX31_RS11175 0.67 +1.1
168,494 + EX31_RS11175 0.83 -0.5
168,495 - EX31_RS11175 0.83 -0.1
168,571 - +0.0
168,584 + +0.1
168,585 - -1.7
168,657 - +0.6
168,667 + -2.0
168,667 + +0.8
168,667 + -0.5
168,668 - +0.9
168,682 - +0.6
168,720 + +2.5
168,720 + -0.0
168,720 + -0.3
168,720 + +0.4
168,720 + -0.1
168,720 + +0.1
168,721 - +0.1
168,796 + -0.1
168,796 + +0.2
168,797 - -0.3
168,835 - -0.8
168,861 + -1.9
168,889 + -0.4
168,893 + -1.2
168,894 - +0.0
168,898 - -2.5
169,024 + EX31_RS11180 0.18 -0.4
169,025 - EX31_RS11180 0.18 -0.5
169,039 - EX31_RS11180 0.19 +0.1
169,093 - EX31_RS11180 0.23 -0.8
169,119 + EX31_RS11180 0.25 +0.7
169,174 + EX31_RS11180 0.30 -0.2
169,175 - EX31_RS11180 0.30 +0.4
169,175 - EX31_RS11180 0.30 -1.4
169,175 - EX31_RS11180 0.30 -1.6
169,175 - EX31_RS11180 0.30 -1.3
169,175 - EX31_RS11180 0.30 -0.2
169,175 - EX31_RS11180 0.30 -1.6
169,175 - EX31_RS11180 0.30 +0.5
169,175 - EX31_RS11180 0.30 +0.8
169,189 + EX31_RS11180 0.31 +0.4
169,190 - EX31_RS11180 0.31 +0.1
169,312 + EX31_RS11180 0.41 -0.4
169,385 + EX31_RS11180 0.47 +0.6
169,385 + EX31_RS11180 0.47 -1.6
169,385 + EX31_RS11180 0.47 -0.3
169,388 - EX31_RS11180 0.48 -1.1
169,453 - EX31_RS11180 0.53 -0.3
169,492 + EX31_RS11180 0.56 -1.0
169,507 - EX31_RS11180 0.57 -0.9
169,609 + EX31_RS11180 0.66 -0.6
169,610 - EX31_RS11180 0.66 -1.4
169,638 + EX31_RS11180 0.68 -1.2
169,733 + EX31_RS11180 0.76 -1.0
169,813 - EX31_RS11180 0.83 -0.3
169,813 - EX31_RS11180 0.83 -1.8
169,875 + EX31_RS11180 0.88 -1.0
169,929 + -0.3
169,985 + -0.2
169,999 - -0.6
170,046 - +0.3
170,071 + -1.0
170,089 - -0.9
170,332 - EX31_RS11185 0.14 -0.1
170,368 + EX31_RS11185 0.18 +0.8
170,408 + EX31_RS11185 0.23 -0.7
170,427 - EX31_RS11185 0.25 +0.3
170,447 + EX31_RS11185 0.27 +0.0
170,576 + EX31_RS11185 0.43 +0.9
170,576 + EX31_RS11185 0.43 -2.3
170,651 + EX31_RS11185 0.52 -1.0
170,667 + EX31_RS11185 0.54 +1.1
170,726 + EX31_RS11185 0.61 +0.7
170,779 - EX31_RS11185 0.67 +0.1
170,855 + EX31_RS11185 0.76 +0.7
170,878 - EX31_RS11185 0.79 +0.3
170,891 + EX31_RS11185 0.81 -0.1
170,891 + EX31_RS11185 0.81 -0.7
170,892 - EX31_RS11185 0.81 -0.3
171,001 - -0.9
171,018 - +0.6

Or see this region's nucleotide sequence