Strain Fitness in Rahnella sp. WP5 around EX31_RS10395

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10390 and EX31_RS10395 are separated by 294 nucleotidesEX31_RS10395 and EX31_RS10400 are separated by 17 nucleotides EX31_RS10390: EX31_RS10390 - PLP-dependent aminotransferase family protein, at 288,291 to 289,727 _RS10390 EX31_RS10395: EX31_RS10395 - NAD(P)-binding domain-containing protein, at 290,022 to 290,780 _RS10395 EX31_RS10400: EX31_RS10400 - Gfo/Idh/MocA family oxidoreductase, at 290,798 to 291,925 _RS10400 Position (kb) 290 291Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 289.150 kb on + strand, within EX31_RS10390at 289.150 kb on + strand, within EX31_RS10390at 289.150 kb on + strand, within EX31_RS10390at 289.150 kb on + strand, within EX31_RS10390at 289.150 kb on + strand, within EX31_RS10390at 289.150 kb on + strand, within EX31_RS10390at 289.150 kb on + strand, within EX31_RS10390at 289.150 kb on + strand, within EX31_RS10390at 289.151 kb on - strand, within EX31_RS10390at 289.151 kb on - strand, within EX31_RS10390at 289.151 kb on - strand, within EX31_RS10390at 289.151 kb on - strand, within EX31_RS10390at 289.151 kb on - strand, within EX31_RS10390at 289.151 kb on - strand, within EX31_RS10390at 289.151 kb on - strand, within EX31_RS10390at 289.151 kb on - strand, within EX31_RS10390at 289.151 kb on - strand, within EX31_RS10390at 289.152 kb on + strand, within EX31_RS10390at 289.152 kb on + strand, within EX31_RS10390at 289.152 kb on + strand, within EX31_RS10390at 289.152 kb on + strand, within EX31_RS10390at 289.152 kb on + strand, within EX31_RS10390at 289.153 kb on - strand, within EX31_RS10390at 289.225 kb on - strand, within EX31_RS10390at 289.225 kb on - strand, within EX31_RS10390at 289.367 kb on + strand, within EX31_RS10390at 289.368 kb on - strand, within EX31_RS10390at 289.369 kb on + strand, within EX31_RS10390at 289.369 kb on + strand, within EX31_RS10390at 289.387 kb on - strand, within EX31_RS10390at 289.387 kb on - strand, within EX31_RS10390at 289.387 kb on - strand, within EX31_RS10390at 289.432 kb on + strand, within EX31_RS10390at 289.433 kb on - strand, within EX31_RS10390at 289.549 kb on + strand, within EX31_RS10390at 289.732 kb on + strandat 289.732 kb on + strandat 289.732 kb on + strandat 289.732 kb on + strandat 289.733 kb on - strandat 289.733 kb on - strandat 289.733 kb on - strandat 289.740 kb on + strandat 289.807 kb on - strandat 289.819 kb on + strandat 289.819 kb on + strandat 289.819 kb on + strandat 289.820 kb on - strandat 289.822 kb on + strandat 289.822 kb on + strandat 289.822 kb on + strandat 289.919 kb on + strandat 289.941 kb on - strandat 289.962 kb on - strandat 289.965 kb on - strandat 289.984 kb on - strandat 289.986 kb on - strandat 289.998 kb on + strandat 289.998 kb on + strandat 289.998 kb on + strandat 289.998 kb on + strandat 289.998 kb on + strandat 289.998 kb on + strandat 289.998 kb on + strandat 289.999 kb on - strandat 289.999 kb on - strandat 289.999 kb on - strandat 289.999 kb on - strandat 289.999 kb on - strandat 289.999 kb on - strandat 289.999 kb on - strandat 289.999 kb on - strandat 290.000 kb on + strandat 290.001 kb on - strandat 290.001 kb on - strandat 290.001 kb on - strandat 290.018 kb on - strandat 290.018 kb on - strandat 290.018 kb on - strandat 290.018 kb on - strandat 290.105 kb on + strand, within EX31_RS10395at 290.207 kb on + strand, within EX31_RS10395at 290.207 kb on + strand, within EX31_RS10395at 290.208 kb on - strand, within EX31_RS10395at 290.208 kb on - strand, within EX31_RS10395at 290.238 kb on + strand, within EX31_RS10395at 290.241 kb on - strand, within EX31_RS10395at 290.295 kb on + strand, within EX31_RS10395at 290.295 kb on + strand, within EX31_RS10395at 290.295 kb on + strand, within EX31_RS10395at 290.295 kb on + strand, within EX31_RS10395at 290.295 kb on + strand, within EX31_RS10395at 290.402 kb on + strand, within EX31_RS10395at 290.403 kb on - strand, within EX31_RS10395at 290.405 kb on + strand, within EX31_RS10395at 290.526 kb on - strand, within EX31_RS10395at 290.546 kb on - strand, within EX31_RS10395at 290.546 kb on - strand, within EX31_RS10395at 290.598 kb on + strand, within EX31_RS10395at 290.598 kb on + strand, within EX31_RS10395at 290.598 kb on + strand, within EX31_RS10395at 290.599 kb on - strand, within EX31_RS10395at 290.610 kb on + strand, within EX31_RS10395at 290.610 kb on + strand, within EX31_RS10395at 290.610 kb on + strand, within EX31_RS10395at 290.611 kb on - strand, within EX31_RS10395at 290.747 kb on + strandat 290.748 kb on - strandat 290.778 kb on + strandat 290.778 kb on + strandat 290.796 kb on - strandat 290.848 kb on + strandat 290.849 kb on - strandat 290.967 kb on + strand, within EX31_RS10400at 290.971 kb on + strand, within EX31_RS10400at 291.013 kb on + strand, within EX31_RS10400at 291.013 kb on + strand, within EX31_RS10400at 291.013 kb on + strand, within EX31_RS10400at 291.013 kb on + strand, within EX31_RS10400at 291.013 kb on + strand, within EX31_RS10400at 291.013 kb on + strand, within EX31_RS10400at 291.014 kb on - strand, within EX31_RS10400at 291.022 kb on + strand, within EX31_RS10400at 291.022 kb on + strand, within EX31_RS10400at 291.022 kb on + strand, within EX31_RS10400at 291.022 kb on + strand, within EX31_RS10400at 291.024 kb on + strand, within EX31_RS10400at 291.024 kb on + strand, within EX31_RS10400at 291.024 kb on + strand, within EX31_RS10400at 291.025 kb on - strand, within EX31_RS10400at 291.025 kb on - strand, within EX31_RS10400at 291.025 kb on - strand, within EX31_RS10400at 291.027 kb on + strand, within EX31_RS10400at 291.027 kb on + strand, within EX31_RS10400at 291.027 kb on + strand, within EX31_RS10400at 291.027 kb on + strand, within EX31_RS10400at 291.027 kb on + strand, within EX31_RS10400at 291.027 kb on + strand, within EX31_RS10400at 291.027 kb on + strand, within EX31_RS10400at 291.028 kb on - strand, within EX31_RS10400at 291.028 kb on - strand, within EX31_RS10400at 291.028 kb on - strand, within EX31_RS10400at 291.064 kb on + strand, within EX31_RS10400at 291.072 kb on + strand, within EX31_RS10400at 291.072 kb on + strand, within EX31_RS10400at 291.095 kb on + strand, within EX31_RS10400at 291.169 kb on - strand, within EX31_RS10400at 291.210 kb on + strand, within EX31_RS10400at 291.211 kb on - strand, within EX31_RS10400at 291.265 kb on - strand, within EX31_RS10400at 291.361 kb on + strand, within EX31_RS10400at 291.362 kb on - strand, within EX31_RS10400at 291.379 kb on + strand, within EX31_RS10400at 291.479 kb on + strand, within EX31_RS10400at 291.508 kb on + strand, within EX31_RS10400at 291.510 kb on + strand, within EX31_RS10400at 291.511 kb on - strand, within EX31_RS10400at 291.511 kb on - strand, within EX31_RS10400at 291.655 kb on - strand, within EX31_RS10400at 291.727 kb on + strand, within EX31_RS10400at 291.745 kb on + strand, within EX31_RS10400at 291.771 kb on - strand, within EX31_RS10400

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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289,150 + EX31_RS10390 0.60 -0.7
289,150 + EX31_RS10390 0.60 -0.3
289,150 + EX31_RS10390 0.60 +0.6
289,150 + EX31_RS10390 0.60 +0.5
289,150 + EX31_RS10390 0.60 +0.3
289,150 + EX31_RS10390 0.60 -0.8
289,150 + EX31_RS10390 0.60 +0.3
289,150 + EX31_RS10390 0.60 +0.1
289,151 - EX31_RS10390 0.60 -0.5
289,151 - EX31_RS10390 0.60 -1.2
289,151 - EX31_RS10390 0.60 +0.0
289,151 - EX31_RS10390 0.60 -1.0
289,151 - EX31_RS10390 0.60 +0.9
289,151 - EX31_RS10390 0.60 +1.5
289,151 - EX31_RS10390 0.60 -0.3
289,151 - EX31_RS10390 0.60 +0.5
289,151 - EX31_RS10390 0.60 +0.1
289,152 + EX31_RS10390 0.60 -1.4
289,152 + EX31_RS10390 0.60 -0.3
289,152 + EX31_RS10390 0.60 +0.1
289,152 + EX31_RS10390 0.60 +1.2
289,152 + EX31_RS10390 0.60 -1.1
289,153 - EX31_RS10390 0.60 +1.5
289,225 - EX31_RS10390 0.65 +0.8
289,225 - EX31_RS10390 0.65 +0.7
289,367 + EX31_RS10390 0.75 -0.2
289,368 - EX31_RS10390 0.75 +1.5
289,369 + EX31_RS10390 0.75 -0.1
289,369 + EX31_RS10390 0.75 -0.2
289,387 - EX31_RS10390 0.76 +0.3
289,387 - EX31_RS10390 0.76 -2.9
289,387 - EX31_RS10390 0.76 -0.4
289,432 + EX31_RS10390 0.79 -0.5
289,433 - EX31_RS10390 0.79 +2.4
289,549 + EX31_RS10390 0.88 +0.0
289,732 + +0.1
289,732 + -0.8
289,732 + +0.8
289,732 + +2.1
289,733 - -0.1
289,733 - +0.4
289,733 - -0.4
289,740 + +0.5
289,807 - -0.7
289,819 + -0.3
289,819 + -0.2
289,819 + +0.1
289,820 - +0.6
289,822 + -1.1
289,822 + -1.1
289,822 + -0.1
289,919 + -1.1
289,941 - +0.7
289,962 - +0.3
289,965 - +0.6
289,984 - -1.8
289,986 - -0.6
289,998 + -0.0
289,998 + -0.5
289,998 + -0.3
289,998 + +0.8
289,998 + -1.2
289,998 + -0.1
289,998 + -0.4
289,999 - -0.7
289,999 - -0.1
289,999 - -1.7
289,999 - -0.0
289,999 - -1.0
289,999 - +0.9
289,999 - -0.7
289,999 - -0.2
290,000 + -0.3
290,001 - -0.1
290,001 - +0.3
290,001 - +1.0
290,018 - -1.2
290,018 - -1.4
290,018 - +0.1
290,018 - -0.9
290,105 + EX31_RS10395 0.11 +0.4
290,207 + EX31_RS10395 0.24 -2.0
290,207 + EX31_RS10395 0.24 -0.4
290,208 - EX31_RS10395 0.25 -0.2
290,208 - EX31_RS10395 0.25 +0.3
290,238 + EX31_RS10395 0.28 -0.4
290,241 - EX31_RS10395 0.29 -1.6
290,295 + EX31_RS10395 0.36 -1.2
290,295 + EX31_RS10395 0.36 -0.7
290,295 + EX31_RS10395 0.36 -0.9
290,295 + EX31_RS10395 0.36 -0.0
290,295 + EX31_RS10395 0.36 -0.4
290,402 + EX31_RS10395 0.50 -0.7
290,403 - EX31_RS10395 0.50 -0.7
290,405 + EX31_RS10395 0.50 -0.7
290,526 - EX31_RS10395 0.66 -0.9
290,546 - EX31_RS10395 0.69 -1.7
290,546 - EX31_RS10395 0.69 -0.1
290,598 + EX31_RS10395 0.76 -0.2
290,598 + EX31_RS10395 0.76 -1.2
290,598 + EX31_RS10395 0.76 +0.5
290,599 - EX31_RS10395 0.76 -1.3
290,610 + EX31_RS10395 0.77 -0.1
290,610 + EX31_RS10395 0.77 -0.6
290,610 + EX31_RS10395 0.77 +0.2
290,611 - EX31_RS10395 0.78 -1.7
290,747 + -1.0
290,748 - -1.0
290,778 + -0.0
290,778 + +0.2
290,796 - -0.2
290,848 + +0.4
290,849 - -0.5
290,967 + EX31_RS10400 0.15 -1.4
290,971 + EX31_RS10400 0.15 -0.1
291,013 + EX31_RS10400 0.19 +1.0
291,013 + EX31_RS10400 0.19 +0.4
291,013 + EX31_RS10400 0.19 -0.3
291,013 + EX31_RS10400 0.19 -0.4
291,013 + EX31_RS10400 0.19 +0.4
291,013 + EX31_RS10400 0.19 +0.3
291,014 - EX31_RS10400 0.19 +1.9
291,022 + EX31_RS10400 0.20 +0.1
291,022 + EX31_RS10400 0.20 -0.1
291,022 + EX31_RS10400 0.20 +1.0
291,022 + EX31_RS10400 0.20 +0.1
291,024 + EX31_RS10400 0.20 +0.4
291,024 + EX31_RS10400 0.20 -0.1
291,024 + EX31_RS10400 0.20 -0.2
291,025 - EX31_RS10400 0.20 -2.1
291,025 - EX31_RS10400 0.20 +0.4
291,025 - EX31_RS10400 0.20 +0.2
291,027 + EX31_RS10400 0.20 +0.2
291,027 + EX31_RS10400 0.20 -0.6
291,027 + EX31_RS10400 0.20 +1.0
291,027 + EX31_RS10400 0.20 -0.2
291,027 + EX31_RS10400 0.20 +0.2
291,027 + EX31_RS10400 0.20 +0.6
291,027 + EX31_RS10400 0.20 -0.2
291,028 - EX31_RS10400 0.20 -0.2
291,028 - EX31_RS10400 0.20 +0.6
291,028 - EX31_RS10400 0.20 -0.5
291,064 + EX31_RS10400 0.24 -0.1
291,072 + EX31_RS10400 0.24 -0.6
291,072 + EX31_RS10400 0.24 -0.2
291,095 + EX31_RS10400 0.26 +0.8
291,169 - EX31_RS10400 0.33 -0.8
291,210 + EX31_RS10400 0.37 -0.6
291,211 - EX31_RS10400 0.37 -0.2
291,265 - EX31_RS10400 0.41 -1.1
291,361 + EX31_RS10400 0.50 -0.0
291,362 - EX31_RS10400 0.50 +0.2
291,379 + EX31_RS10400 0.52 -1.5
291,479 + EX31_RS10400 0.60 -0.2
291,508 + EX31_RS10400 0.63 -1.2
291,510 + EX31_RS10400 0.63 +1.4
291,511 - EX31_RS10400 0.63 +0.5
291,511 - EX31_RS10400 0.63 +0.4
291,655 - EX31_RS10400 0.76 -0.3
291,727 + EX31_RS10400 0.82 +0.5
291,745 + EX31_RS10400 0.84 +0.9
291,771 - EX31_RS10400 0.86 -1.7

Or see this region's nucleotide sequence