Strain Fitness in Rahnella sp. WP5 around EX31_RS10340

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10335 and EX31_RS10340 are separated by 655 nucleotidesEX31_RS10340 and EX31_RS10345 are separated by 145 nucleotides EX31_RS10335: EX31_RS10335 - D-galactonate utilization transcriptional regulator DgoR, at 280,706 to 281,404 _RS10335 EX31_RS10340: EX31_RS10340 - GNAT family N-acetyltransferase, at 282,060 to 282,497 _RS10340 EX31_RS10345: EX31_RS10345 - GNAT family N-acetyltransferase, at 282,643 to 283,158 _RS10345 Position (kb) 282 283Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 281.089 kb on + strand, within EX31_RS10335at 281.090 kb on - strand, within EX31_RS10335at 281.170 kb on - strand, within EX31_RS10335at 281.187 kb on - strand, within EX31_RS10335at 281.187 kb on - strand, within EX31_RS10335at 281.217 kb on - strand, within EX31_RS10335at 281.332 kb on - strand, within EX31_RS10335at 281.332 kb on - strand, within EX31_RS10335at 281.332 kb on - strand, within EX31_RS10335at 281.332 kb on - strand, within EX31_RS10335at 281.332 kb on - strand, within EX31_RS10335at 281.358 kb on - strandat 281.404 kb on + strandat 281.404 kb on + strandat 281.404 kb on + strandat 281.405 kb on - strandat 281.405 kb on - strandat 281.405 kb on - strandat 281.405 kb on - strandat 281.423 kb on + strandat 281.449 kb on - strandat 281.449 kb on - strandat 281.455 kb on - strandat 281.463 kb on + strandat 281.463 kb on + strandat 281.463 kb on + strandat 281.464 kb on - strandat 281.497 kb on - strandat 281.748 kb on + strandat 281.748 kb on + strandat 281.916 kb on + strandat 281.917 kb on - strandat 281.920 kb on + strandat 281.939 kb on + strandat 281.939 kb on + strandat 281.942 kb on + strandat 281.942 kb on + strandat 281.943 kb on - strandat 281.943 kb on - strandat 282.095 kb on - strandat 282.161 kb on + strand, within EX31_RS10340at 282.162 kb on - strand, within EX31_RS10340at 282.170 kb on + strand, within EX31_RS10340at 282.226 kb on + strand, within EX31_RS10340at 282.227 kb on - strand, within EX31_RS10340at 282.473 kb on + strandat 282.474 kb on - strandat 282.495 kb on + strandat 282.495 kb on + strandat 282.496 kb on - strandat 282.519 kb on + strandat 282.519 kb on + strandat 282.520 kb on - strandat 282.531 kb on + strandat 282.531 kb on + strandat 282.532 kb on - strandat 282.536 kb on - strandat 282.536 kb on - strandat 282.596 kb on + strandat 282.596 kb on + strandat 282.597 kb on - strandat 282.597 kb on - strandat 282.657 kb on + strandat 282.772 kb on - strand, within EX31_RS10345at 282.809 kb on - strand, within EX31_RS10345at 282.809 kb on - strand, within EX31_RS10345at 282.809 kb on - strand, within EX31_RS10345at 282.833 kb on + strand, within EX31_RS10345at 282.833 kb on + strand, within EX31_RS10345at 282.834 kb on - strand, within EX31_RS10345at 282.850 kb on + strand, within EX31_RS10345at 282.851 kb on - strand, within EX31_RS10345at 282.864 kb on + strand, within EX31_RS10345at 282.865 kb on - strand, within EX31_RS10345at 282.908 kb on - strand, within EX31_RS10345at 282.908 kb on - strand, within EX31_RS10345at 282.943 kb on - strand, within EX31_RS10345at 283.034 kb on + strand, within EX31_RS10345at 283.038 kb on + strand, within EX31_RS10345at 283.039 kb on - strand, within EX31_RS10345at 283.054 kb on - strand, within EX31_RS10345at 283.212 kb on - strandat 283.405 kb on + strandat 283.421 kb on - strandat 283.421 kb on - strandat 283.441 kb on - strandat 283.451 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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281,089 + EX31_RS10335 0.55 -2.8
281,090 - EX31_RS10335 0.55 +0.8
281,170 - EX31_RS10335 0.66 +0.2
281,187 - EX31_RS10335 0.69 -0.4
281,187 - EX31_RS10335 0.69 +0.7
281,217 - EX31_RS10335 0.73 +0.8
281,332 - EX31_RS10335 0.90 +0.7
281,332 - EX31_RS10335 0.90 +0.6
281,332 - EX31_RS10335 0.90 +0.7
281,332 - EX31_RS10335 0.90 +0.5
281,332 - EX31_RS10335 0.90 -0.9
281,358 - +1.5
281,404 + -0.9
281,404 + -0.5
281,404 + +0.8
281,405 - +0.4
281,405 - -0.1
281,405 - +0.4
281,405 - +0.5
281,423 + +0.5
281,449 - -0.0
281,449 - +0.3
281,455 - +0.4
281,463 + -0.5
281,463 + -0.4
281,463 + +0.8
281,464 - +0.3
281,497 - +1.2
281,748 + -0.4
281,748 + -0.8
281,916 + +0.8
281,917 - +0.1
281,920 + -0.6
281,939 + +0.1
281,939 + +0.4
281,942 + -0.5
281,942 + -0.0
281,943 - +2.0
281,943 - -0.5
282,095 - -1.8
282,161 + EX31_RS10340 0.23 +0.3
282,162 - EX31_RS10340 0.23 -0.6
282,170 + EX31_RS10340 0.25 -0.6
282,226 + EX31_RS10340 0.38 -0.6
282,227 - EX31_RS10340 0.38 -1.5
282,473 + -1.0
282,474 - +1.1
282,495 + -0.7
282,495 + -2.2
282,496 - -0.5
282,519 + -0.0
282,519 + -0.0
282,520 - +0.3
282,531 + -2.2
282,531 + -0.1
282,532 - +0.7
282,536 - -0.6
282,536 - -0.7
282,596 + +0.0
282,596 + -0.9
282,597 - -0.0
282,597 - +1.1
282,657 + +0.6
282,772 - EX31_RS10345 0.25 +1.0
282,809 - EX31_RS10345 0.32 +0.4
282,809 - EX31_RS10345 0.32 -0.4
282,809 - EX31_RS10345 0.32 -0.1
282,833 + EX31_RS10345 0.37 -0.3
282,833 + EX31_RS10345 0.37 -0.7
282,834 - EX31_RS10345 0.37 +0.9
282,850 + EX31_RS10345 0.40 -1.5
282,851 - EX31_RS10345 0.40 +1.5
282,864 + EX31_RS10345 0.43 +0.2
282,865 - EX31_RS10345 0.43 +0.4
282,908 - EX31_RS10345 0.51 -1.0
282,908 - EX31_RS10345 0.51 +1.0
282,943 - EX31_RS10345 0.58 -1.1
283,034 + EX31_RS10345 0.76 -2.1
283,038 + EX31_RS10345 0.77 +0.0
283,039 - EX31_RS10345 0.77 +0.3
283,054 - EX31_RS10345 0.80 -1.1
283,212 - -0.4
283,405 + -0.2
283,421 - +0.2
283,421 - -0.8
283,441 - +2.0
283,451 - +0.2

Or see this region's nucleotide sequence