Strain Fitness in Rahnella sp. WP5 around EX31_RS07290

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07285 and EX31_RS07290 are separated by 421 nucleotidesEX31_RS07290 and EX31_RS07295 are separated by 63 nucleotides EX31_RS07285: EX31_RS07285 - GNAT family N-acetyltransferase, at 259,839 to 260,546 _RS07285 EX31_RS07290: EX31_RS07290 - C4-dicarboxylic acid transporter DauA, at 260,968 to 262,635 _RS07290 EX31_RS07295: EX31_RS07295 - 3-deoxy-8-phosphooctulonate synthase, at 262,699 to 263,553 _RS07295 Position (kb) 260 261 262 263Strain fitness (log2 ratio) -2 -1 0 1 2at 260.022 kb on + strand, within EX31_RS07285at 260.067 kb on + strand, within EX31_RS07285at 260.068 kb on - strand, within EX31_RS07285at 260.117 kb on + strand, within EX31_RS07285at 260.248 kb on + strand, within EX31_RS07285at 260.265 kb on + strand, within EX31_RS07285at 260.265 kb on + strand, within EX31_RS07285at 260.265 kb on + strand, within EX31_RS07285at 260.265 kb on + strand, within EX31_RS07285at 260.266 kb on - strand, within EX31_RS07285at 260.514 kb on + strandat 260.551 kb on + strandat 260.590 kb on + strandat 260.590 kb on + strandat 260.590 kb on + strandat 260.670 kb on - strandat 260.674 kb on - strandat 260.686 kb on + strandat 260.687 kb on - strandat 260.701 kb on + strandat 260.702 kb on - strandat 260.743 kb on + strandat 260.743 kb on + strandat 260.743 kb on + strandat 260.743 kb on + strandat 260.752 kb on + strandat 260.752 kb on + strandat 260.753 kb on - strandat 260.821 kb on + strandat 260.821 kb on + strandat 260.821 kb on + strandat 260.821 kb on + strandat 260.822 kb on - strandat 260.822 kb on - strandat 260.826 kb on + strandat 260.826 kb on + strandat 260.827 kb on - strandat 260.828 kb on + strandat 260.829 kb on - strandat 260.868 kb on + strandat 260.868 kb on + strandat 260.868 kb on + strandat 260.898 kb on + strandat 260.936 kb on + strandat 260.960 kb on + strandat 260.961 kb on - strandat 260.967 kb on + strandat 260.968 kb on - strandat 260.973 kb on + strandat 261.053 kb on + strandat 261.154 kb on + strand, within EX31_RS07290at 261.155 kb on - strand, within EX31_RS07290at 261.156 kb on + strand, within EX31_RS07290at 261.156 kb on + strand, within EX31_RS07290at 261.156 kb on + strand, within EX31_RS07290at 261.157 kb on - strand, within EX31_RS07290at 261.157 kb on - strand, within EX31_RS07290at 261.157 kb on - strand, within EX31_RS07290at 261.241 kb on - strand, within EX31_RS07290at 261.309 kb on + strand, within EX31_RS07290at 261.310 kb on - strand, within EX31_RS07290at 261.355 kb on + strand, within EX31_RS07290at 261.360 kb on - strand, within EX31_RS07290at 261.467 kb on - strand, within EX31_RS07290at 261.467 kb on - strand, within EX31_RS07290at 261.474 kb on + strand, within EX31_RS07290at 261.552 kb on - strand, within EX31_RS07290at 261.554 kb on + strand, within EX31_RS07290at 262.220 kb on + strand, within EX31_RS07290at 262.328 kb on + strand, within EX31_RS07290at 262.389 kb on + strand, within EX31_RS07290at 262.390 kb on - strand, within EX31_RS07290at 262.390 kb on - strand, within EX31_RS07290at 262.442 kb on + strand, within EX31_RS07290at 262.503 kb on + strandat 262.633 kb on + strandat 262.634 kb on - strandat 262.691 kb on - strandat 262.691 kb on - strandat 262.701 kb on - strandat 262.701 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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260,022 + EX31_RS07285 0.26 -0.4
260,067 + EX31_RS07285 0.32 -1.4
260,068 - EX31_RS07285 0.32 +0.7
260,117 + EX31_RS07285 0.39 +0.3
260,248 + EX31_RS07285 0.58 +0.5
260,265 + EX31_RS07285 0.60 +1.1
260,265 + EX31_RS07285 0.60 -0.1
260,265 + EX31_RS07285 0.60 +0.6
260,265 + EX31_RS07285 0.60 +0.2
260,266 - EX31_RS07285 0.60 +0.4
260,514 + -0.5
260,551 + +0.8
260,590 + -0.5
260,590 + -0.8
260,590 + -0.4
260,670 - +0.2
260,674 - -0.3
260,686 + +0.1
260,687 - +0.7
260,701 + -0.2
260,702 - -1.6
260,743 + -0.8
260,743 + -0.4
260,743 + +0.1
260,743 + -2.5
260,752 + +0.0
260,752 + -0.4
260,753 - +0.6
260,821 + -1.5
260,821 + +0.6
260,821 + +0.7
260,821 + +0.2
260,822 - +1.2
260,822 - -1.0
260,826 + -1.6
260,826 + -0.4
260,827 - -0.1
260,828 + -1.0
260,829 - +0.6
260,868 + +0.4
260,868 + -1.9
260,868 + -0.7
260,898 + +1.2
260,936 + -0.6
260,960 + -1.3
260,961 - -0.9
260,967 + -0.8
260,968 - -0.8
260,973 + +2.3
261,053 + +0.4
261,154 + EX31_RS07290 0.11 +0.1
261,155 - EX31_RS07290 0.11 +1.1
261,156 + EX31_RS07290 0.11 -1.2
261,156 + EX31_RS07290 0.11 -1.1
261,156 + EX31_RS07290 0.11 +0.5
261,157 - EX31_RS07290 0.11 -2.0
261,157 - EX31_RS07290 0.11 -1.4
261,157 - EX31_RS07290 0.11 -0.4
261,241 - EX31_RS07290 0.16 -0.7
261,309 + EX31_RS07290 0.20 +0.5
261,310 - EX31_RS07290 0.21 -0.2
261,355 + EX31_RS07290 0.23 -0.7
261,360 - EX31_RS07290 0.24 +0.7
261,467 - EX31_RS07290 0.30 -1.1
261,467 - EX31_RS07290 0.30 -1.2
261,474 + EX31_RS07290 0.30 -1.5
261,552 - EX31_RS07290 0.35 +0.8
261,554 + EX31_RS07290 0.35 +1.7
262,220 + EX31_RS07290 0.75 +0.0
262,328 + EX31_RS07290 0.82 -0.5
262,389 + EX31_RS07290 0.85 -1.4
262,390 - EX31_RS07290 0.85 -1.8
262,390 - EX31_RS07290 0.85 -1.2
262,442 + EX31_RS07290 0.88 -0.8
262,503 + +0.8
262,633 + +1.1
262,634 - -0.4
262,691 - -0.4
262,691 - -0.1
262,701 - -0.7
262,701 - +2.0

Or see this region's nucleotide sequence