Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06805 and EX31_RS06810 are separated by 274 nucleotides EX31_RS06810 and EX31_RS06815 are separated by 189 nucleotides
EX31_RS06805: EX31_RS06805 - ABC transporter substrate-binding protein, at 148,164 to 149,171
_RS06805
EX31_RS06810: EX31_RS06810 - LysR family transcriptional regulator, at 149,446 to 150,426
_RS06810
EX31_RS06815: EX31_RS06815 - argininosuccinate lyase, at 150,616 to 152,043
_RS06815
Position (kb) 149
150
151 Strain fitness (log2 ratio) -1
0
1 at 148.480 kb on - strand, within EX31_RS06805 at 148.581 kb on - strand, within EX31_RS06805 at 148.583 kb on - strand, within EX31_RS06805 at 148.592 kb on - strand, within EX31_RS06805 at 148.592 kb on - strand, within EX31_RS06805 at 148.695 kb on - strand, within EX31_RS06805 at 148.825 kb on - strand, within EX31_RS06805 at 149.171 kb on + strand at 149.239 kb on - strand at 149.312 kb on + strand at 149.329 kb on - strand at 149.352 kb on + strand at 149.354 kb on + strand at 149.423 kb on + strand at 149.425 kb on + strand at 149.499 kb on - strand at 149.599 kb on - strand, within EX31_RS06810 at 149.794 kb on + strand, within EX31_RS06810 at 149.846 kb on + strand, within EX31_RS06810 at 149.862 kb on - strand, within EX31_RS06810 at 150.002 kb on + strand, within EX31_RS06810 at 150.754 kb on + strand at 150.754 kb on + strand at 150.754 kb on + strand at 150.761 kb on + strand, within EX31_RS06815 at 150.814 kb on - strand, within EX31_RS06815 at 150.816 kb on + strand, within EX31_RS06815 at 150.849 kb on + strand, within EX31_RS06815 at 150.954 kb on + strand, within EX31_RS06815 at 150.955 kb on - strand, within EX31_RS06815 at 150.978 kb on - strand, within EX31_RS06815 at 150.985 kb on + strand, within EX31_RS06815 at 151.065 kb on + strand, within EX31_RS06815 at 151.066 kb on - strand, within EX31_RS06815 at 151.071 kb on + strand, within EX31_RS06815 at 151.072 kb on - strand, within EX31_RS06815 at 151.090 kb on - strand, within EX31_RS06815
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 148,480 - EX31_RS06805 0.31 +0.7 148,581 - EX31_RS06805 0.41 +0.6 148,583 - EX31_RS06805 0.42 -0.9 148,592 - EX31_RS06805 0.42 +0.9 148,592 - EX31_RS06805 0.42 -0.0 148,695 - EX31_RS06805 0.53 +0.5 148,825 - EX31_RS06805 0.66 +0.5 149,171 + -0.5 149,239 - +0.5 149,312 + -0.5 149,329 - +0.2 149,352 + -1.2 149,354 + +1.4 149,423 + -0.2 149,425 + +1.3 149,499 - +0.6 149,599 - EX31_RS06810 0.16 +0.4 149,794 + EX31_RS06810 0.35 -0.3 149,846 + EX31_RS06810 0.41 -1.1 149,862 - EX31_RS06810 0.42 -0.4 150,002 + EX31_RS06810 0.57 -0.6 150,754 + +1.4 150,754 + -0.2 150,754 + -1.0 150,761 + EX31_RS06815 0.10 +0.2 150,814 - EX31_RS06815 0.14 +0.4 150,816 + EX31_RS06815 0.14 -0.2 150,849 + EX31_RS06815 0.16 +0.3 150,954 + EX31_RS06815 0.24 +0.9 150,955 - EX31_RS06815 0.24 -0.7 150,978 - EX31_RS06815 0.25 +0.3 150,985 + EX31_RS06815 0.26 +1.4 151,065 + EX31_RS06815 0.31 +0.1 151,066 - EX31_RS06815 0.32 +1.3 151,071 + EX31_RS06815 0.32 +1.0 151,072 - EX31_RS06815 0.32 -0.3 151,090 - EX31_RS06815 0.33 -1.5
Or see this region's nucleotide sequence