Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05675 and EX31_RS05680 are separated by 295 nucleotides EX31_RS05680 and EX31_RS05685 are separated by 21 nucleotides EX31_RS05685 and EX31_RS05690 are separated by 22 nucleotides EX31_RS05690 and EX31_RS05695 are separated by 217 nucleotides
EX31_RS05675: EX31_RS05675 - glutathione transferase, at 289,220 to 289,849
_RS05675
EX31_RS05680: EX31_RS05680 - hypothetical protein, at 290,145 to 290,795
_RS05680
EX31_RS05685: EX31_RS05685 - hypothetical protein, at 290,817 to 291,008
_RS05685
EX31_RS05690: EX31_RS05690 - type VI secretion system tube protein Hcp, at 291,031 to 291,510
_RS05690
EX31_RS05695: EX31_RS05695 - hypothetical protein, at 291,728 to 292,267
_RS05695
Position (kb) 290
291
292 Strain fitness (log2 ratio) -2
-1
0
1 at 289.891 kb on - strand at 289.891 kb on - strand at 289.990 kb on + strand at 289.990 kb on + strand at 289.990 kb on + strand at 289.991 kb on - strand at 289.991 kb on - strand at 290.000 kb on + strand at 290.000 kb on + strand at 290.000 kb on + strand at 290.000 kb on + strand at 290.000 kb on + strand at 290.000 kb on + strand at 290.001 kb on - strand at 290.001 kb on - strand at 290.002 kb on + strand at 290.002 kb on + strand at 290.002 kb on + strand at 290.003 kb on - strand at 290.003 kb on - strand at 290.003 kb on - strand at 290.003 kb on - strand at 290.003 kb on - strand at 290.003 kb on - strand at 290.003 kb on - strand at 290.012 kb on + strand at 290.012 kb on + strand at 290.013 kb on - strand at 290.036 kb on - strand at 290.090 kb on - strand at 290.090 kb on - strand at 290.097 kb on + strand at 290.100 kb on - strand at 290.100 kb on - strand at 290.100 kb on - strand at 290.164 kb on + strand at 290.186 kb on - strand at 290.189 kb on + strand at 290.190 kb on - strand at 290.190 kb on - strand at 290.219 kb on - strand, within EX31_RS05680 at 290.263 kb on - strand, within EX31_RS05680 at 290.311 kb on + strand, within EX31_RS05680 at 290.317 kb on + strand, within EX31_RS05680 at 290.320 kb on + strand, within EX31_RS05680 at 290.320 kb on + strand, within EX31_RS05680 at 290.320 kb on + strand, within EX31_RS05680 at 290.471 kb on + strand, within EX31_RS05680 at 290.471 kb on + strand, within EX31_RS05680 at 290.471 kb on + strand, within EX31_RS05680 at 290.475 kb on - strand, within EX31_RS05680 at 290.480 kb on + strand, within EX31_RS05680 at 290.480 kb on + strand, within EX31_RS05680 at 290.481 kb on - strand, within EX31_RS05680 at 290.536 kb on + strand, within EX31_RS05680 at 290.537 kb on - strand, within EX31_RS05680 at 290.560 kb on + strand, within EX31_RS05680 at 290.561 kb on - strand, within EX31_RS05680 at 290.563 kb on + strand, within EX31_RS05680 at 290.563 kb on + strand, within EX31_RS05680 at 290.564 kb on - strand, within EX31_RS05680 at 290.564 kb on - strand, within EX31_RS05680 at 290.564 kb on - strand, within EX31_RS05680 at 290.567 kb on - strand, within EX31_RS05680 at 290.634 kb on + strand, within EX31_RS05680 at 290.640 kb on - strand, within EX31_RS05680 at 290.659 kb on - strand, within EX31_RS05680 at 290.670 kb on + strand, within EX31_RS05680 at 290.671 kb on - strand, within EX31_RS05680 at 290.671 kb on - strand, within EX31_RS05680 at 290.671 kb on - strand, within EX31_RS05680 at 290.715 kb on + strand, within EX31_RS05680 at 290.716 kb on - strand, within EX31_RS05680 at 290.716 kb on - strand, within EX31_RS05680 at 290.750 kb on + strand at 290.750 kb on + strand at 290.750 kb on + strand at 290.750 kb on + strand at 290.751 kb on - strand at 290.767 kb on + strand at 290.767 kb on + strand at 290.793 kb on + strand at 290.793 kb on + strand at 290.793 kb on + strand at 290.793 kb on + strand at 290.794 kb on - strand at 290.794 kb on - strand at 290.794 kb on - strand at 290.816 kb on + strand at 290.817 kb on - strand at 290.843 kb on - strand, within EX31_RS05685 at 290.843 kb on - strand, within EX31_RS05685 at 290.843 kb on - strand, within EX31_RS05685 at 290.852 kb on - strand, within EX31_RS05685 at 290.950 kb on + strand, within EX31_RS05685 at 290.951 kb on - strand, within EX31_RS05685 at 290.951 kb on - strand, within EX31_RS05685 at 290.972 kb on + strand, within EX31_RS05685 at 290.985 kb on - strand, within EX31_RS05685 at 291.007 kb on - strand at 291.019 kb on + strand at 291.051 kb on - strand at 291.051 kb on - strand at 291.066 kb on - strand at 291.120 kb on - strand, within EX31_RS05690 at 291.141 kb on + strand, within EX31_RS05690 at 291.141 kb on + strand, within EX31_RS05690 at 291.142 kb on - strand, within EX31_RS05690 at 291.142 kb on - strand, within EX31_RS05690 at 291.142 kb on - strand, within EX31_RS05690 at 291.142 kb on - strand, within EX31_RS05690 at 291.142 kb on - strand, within EX31_RS05690 at 291.144 kb on + strand, within EX31_RS05690 at 291.144 kb on + strand, within EX31_RS05690 at 291.145 kb on - strand, within EX31_RS05690 at 291.145 kb on - strand, within EX31_RS05690 at 291.179 kb on + strand, within EX31_RS05690 at 291.194 kb on + strand, within EX31_RS05690 at 291.286 kb on - strand, within EX31_RS05690 at 291.298 kb on + strand, within EX31_RS05690 at 291.299 kb on - strand, within EX31_RS05690 at 291.331 kb on + strand, within EX31_RS05690 at 291.332 kb on - strand, within EX31_RS05690 at 291.340 kb on - strand, within EX31_RS05690 at 291.364 kb on - strand, within EX31_RS05690 at 291.383 kb on + strand, within EX31_RS05690 at 291.428 kb on + strand, within EX31_RS05690 at 291.429 kb on - strand, within EX31_RS05690 at 291.429 kb on - strand, within EX31_RS05690 at 291.444 kb on + strand, within EX31_RS05690 at 291.444 kb on + strand, within EX31_RS05690 at 291.444 kb on + strand, within EX31_RS05690 at 291.445 kb on - strand, within EX31_RS05690 at 291.445 kb on - strand, within EX31_RS05690 at 291.454 kb on + strand, within EX31_RS05690 at 291.458 kb on + strand, within EX31_RS05690 at 291.459 kb on - strand, within EX31_RS05690 at 291.468 kb on + strand at 291.477 kb on + strand at 291.478 kb on - strand at 291.478 kb on - strand at 291.483 kb on + strand at 291.484 kb on - strand at 291.509 kb on - strand at 291.512 kb on - strand at 291.512 kb on - strand at 291.512 kb on - strand at 291.512 kb on - strand at 291.512 kb on - strand at 291.530 kb on + strand at 291.531 kb on - strand at 291.569 kb on + strand at 291.569 kb on + strand at 291.569 kb on + strand at 291.569 kb on + strand at 291.569 kb on + strand at 291.569 kb on + strand at 291.569 kb on + strand at 291.570 kb on - strand at 291.570 kb on - strand at 291.571 kb on + strand at 291.571 kb on + strand at 291.571 kb on + strand at 291.571 kb on + strand at 291.571 kb on + strand at 291.571 kb on + strand at 291.571 kb on + strand at 291.571 kb on + strand at 291.571 kb on + strand at 291.572 kb on - strand at 291.572 kb on - strand at 291.572 kb on - strand at 291.572 kb on - strand at 291.606 kb on + strand at 291.606 kb on + strand at 291.606 kb on + strand at 291.606 kb on + strand at 291.607 kb on - strand at 291.607 kb on - strand at 291.610 kb on + strand at 291.610 kb on + strand at 291.611 kb on - strand at 291.629 kb on + strand at 291.629 kb on + strand at 291.629 kb on + strand at 291.629 kb on + strand at 291.629 kb on + strand at 291.633 kb on + strand at 291.633 kb on + strand at 291.634 kb on - strand at 291.634 kb on - strand at 291.634 kb on - strand at 291.651 kb on + strand at 291.680 kb on + strand at 291.680 kb on + strand at 291.680 kb on + strand at 291.681 kb on - strand at 291.681 kb on - strand at 291.682 kb on + strand at 291.682 kb on + strand at 291.682 kb on + strand at 291.683 kb on - strand at 291.683 kb on - strand at 291.683 kb on - strand at 291.683 kb on - strand at 291.683 kb on - strand at 291.683 kb on - strand at 291.691 kb on + strand at 291.691 kb on + strand at 291.691 kb on + strand at 291.691 kb on + strand at 291.691 kb on + strand at 291.692 kb on - strand at 291.692 kb on - strand at 291.727 kb on + strand at 291.727 kb on + strand at 291.727 kb on + strand at 291.727 kb on + strand at 291.728 kb on - strand at 291.728 kb on - strand at 291.728 kb on - strand at 291.728 kb on - strand at 291.744 kb on + strand at 291.744 kb on + strand at 291.745 kb on - strand at 291.745 kb on - strand at 291.745 kb on - strand at 291.787 kb on + strand, within EX31_RS05695 at 291.787 kb on + strand, within EX31_RS05695 at 291.788 kb on - strand, within EX31_RS05695 at 291.788 kb on - strand, within EX31_RS05695 at 291.823 kb on + strand, within EX31_RS05695 at 291.824 kb on - strand, within EX31_RS05695 at 291.864 kb on - strand, within EX31_RS05695 at 291.864 kb on - strand, within EX31_RS05695 at 291.889 kb on + strand, within EX31_RS05695 at 291.951 kb on + strand, within EX31_RS05695 at 291.951 kb on + strand, within EX31_RS05695 at 291.951 kb on + strand, within EX31_RS05695 at 291.952 kb on - strand, within EX31_RS05695 at 291.952 kb on - strand, within EX31_RS05695 at 291.965 kb on - strand, within EX31_RS05695
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 289,891 - -0.1 289,891 - -0.9 289,990 + -0.1 289,990 + -0.3 289,990 + +0.0 289,991 - +0.0 289,991 - +0.7 290,000 + -1.5 290,000 + +0.1 290,000 + -0.1 290,000 + +0.0 290,000 + -0.4 290,000 + -1.0 290,001 - -0.2 290,001 - +0.0 290,002 + +0.4 290,002 + +0.7 290,002 + +0.3 290,003 - -1.2 290,003 - -0.7 290,003 - -0.8 290,003 - -0.5 290,003 - +0.3 290,003 - -0.4 290,003 - +0.7 290,012 + -0.5 290,012 + -0.7 290,013 - -0.0 290,036 - -0.6 290,090 - -2.3 290,090 - -1.2 290,097 + -0.3 290,100 - -0.0 290,100 - -0.2 290,100 - +0.4 290,164 + -0.3 290,186 - -0.5 290,189 + +0.0 290,190 - -0.5 290,190 - +0.2 290,219 - EX31_RS05680 0.11 -0.2 290,263 - EX31_RS05680 0.18 +1.3 290,311 + EX31_RS05680 0.25 +0.6 290,317 + EX31_RS05680 0.26 -0.3 290,320 + EX31_RS05680 0.27 +0.4 290,320 + EX31_RS05680 0.27 +1.2 290,320 + EX31_RS05680 0.27 -0.0 290,471 + EX31_RS05680 0.50 +0.2 290,471 + EX31_RS05680 0.50 -1.4 290,471 + EX31_RS05680 0.50 -0.2 290,475 - EX31_RS05680 0.51 +0.3 290,480 + EX31_RS05680 0.51 +0.2 290,480 + EX31_RS05680 0.51 -0.4 290,481 - EX31_RS05680 0.52 -0.9 290,536 + EX31_RS05680 0.60 -0.4 290,537 - EX31_RS05680 0.60 -0.6 290,560 + EX31_RS05680 0.64 +0.3 290,561 - EX31_RS05680 0.64 -0.4 290,563 + EX31_RS05680 0.64 -1.6 290,563 + EX31_RS05680 0.64 -0.1 290,564 - EX31_RS05680 0.64 +0.1 290,564 - EX31_RS05680 0.64 +0.5 290,564 - EX31_RS05680 0.64 +0.1 290,567 - EX31_RS05680 0.65 -0.2 290,634 + EX31_RS05680 0.75 -0.3 290,640 - EX31_RS05680 0.76 +0.1 290,659 - EX31_RS05680 0.79 -1.3 290,670 + EX31_RS05680 0.81 -0.4 290,671 - EX31_RS05680 0.81 -0.9 290,671 - EX31_RS05680 0.81 -1.1 290,671 - EX31_RS05680 0.81 +0.9 290,715 + EX31_RS05680 0.88 +1.1 290,716 - EX31_RS05680 0.88 -2.2 290,716 - EX31_RS05680 0.88 -0.4 290,750 + +1.4 290,750 + -0.7 290,750 + -0.4 290,750 + +0.0 290,751 - -1.5 290,767 + -0.2 290,767 + -0.3 290,793 + -0.0 290,793 + -1.5 290,793 + +1.0 290,793 + -0.2 290,794 - -0.3 290,794 - +0.3 290,794 - -0.4 290,816 + -0.0 290,817 - -0.0 290,843 - EX31_RS05685 0.14 -0.7 290,843 - EX31_RS05685 0.14 -1.3 290,843 - EX31_RS05685 0.14 +0.3 290,852 - EX31_RS05685 0.18 -0.5 290,950 + EX31_RS05685 0.69 -0.3 290,951 - EX31_RS05685 0.70 -1.2 290,951 - EX31_RS05685 0.70 -1.5 290,972 + EX31_RS05685 0.81 -0.6 290,985 - EX31_RS05685 0.88 -0.6 291,007 - -0.7 291,019 + -0.3 291,051 - -0.9 291,051 - +0.3 291,066 - -0.6 291,120 - EX31_RS05690 0.19 +0.7 291,141 + EX31_RS05690 0.23 -0.4 291,141 + EX31_RS05690 0.23 -0.0 291,142 - EX31_RS05690 0.23 -0.5 291,142 - EX31_RS05690 0.23 -0.4 291,142 - EX31_RS05690 0.23 -1.7 291,142 - EX31_RS05690 0.23 -0.3 291,142 - EX31_RS05690 0.23 +0.2 291,144 + EX31_RS05690 0.24 -0.0 291,144 + EX31_RS05690 0.24 -0.1 291,145 - EX31_RS05690 0.24 -0.3 291,145 - EX31_RS05690 0.24 -0.4 291,179 + EX31_RS05690 0.31 +1.5 291,194 + EX31_RS05690 0.34 +0.1 291,286 - EX31_RS05690 0.53 -0.2 291,298 + EX31_RS05690 0.56 +0.2 291,299 - EX31_RS05690 0.56 -0.0 291,331 + EX31_RS05690 0.62 -1.1 291,332 - EX31_RS05690 0.63 -0.8 291,340 - EX31_RS05690 0.64 +0.3 291,364 - EX31_RS05690 0.69 +0.3 291,383 + EX31_RS05690 0.73 -0.7 291,428 + EX31_RS05690 0.83 +0.1 291,429 - EX31_RS05690 0.83 +0.4 291,429 - EX31_RS05690 0.83 +0.2 291,444 + EX31_RS05690 0.86 -0.1 291,444 + EX31_RS05690 0.86 -0.3 291,444 + EX31_RS05690 0.86 -1.5 291,445 - EX31_RS05690 0.86 -0.3 291,445 - EX31_RS05690 0.86 -0.6 291,454 + EX31_RS05690 0.88 +0.1 291,458 + EX31_RS05690 0.89 -0.5 291,459 - EX31_RS05690 0.89 +0.6 291,468 + -0.1 291,477 + -0.2 291,478 - -1.0 291,478 - -0.6 291,483 + +0.2 291,484 - -0.2 291,509 - -0.7 291,512 - -0.7 291,512 - +0.2 291,512 - +0.5 291,512 - -1.2 291,512 - +0.8 291,530 + -0.7 291,531 - -1.3 291,569 + -2.0 291,569 + -0.4 291,569 + +0.2 291,569 + +0.6 291,569 + -1.6 291,569 + +0.3 291,569 + -0.0 291,570 - -0.3 291,570 - -0.3 291,571 + -0.0 291,571 + +0.1 291,571 + +0.1 291,571 + +0.2 291,571 + +0.2 291,571 + -0.1 291,571 + +0.3 291,571 + +1.0 291,571 + +0.1 291,572 - -0.2 291,572 - +0.9 291,572 - +0.5 291,572 - -0.2 291,606 + -0.4 291,606 + +0.7 291,606 + -0.7 291,606 + -0.2 291,607 - +0.8 291,607 - -0.9 291,610 + -0.4 291,610 + -0.9 291,611 - -0.4 291,629 + -0.1 291,629 + +0.2 291,629 + -0.2 291,629 + -0.2 291,629 + +0.4 291,633 + +0.5 291,633 + +1.4 291,634 - +1.1 291,634 - -0.4 291,634 - -0.5 291,651 + +0.8 291,680 + +0.2 291,680 + +0.4 291,680 + -0.3 291,681 - -1.0 291,681 - -0.1 291,682 + -0.4 291,682 + +0.1 291,682 + -0.3 291,683 - +0.2 291,683 - -0.7 291,683 - +0.1 291,683 - -0.1 291,683 - -1.3 291,683 - -0.5 291,691 + -0.0 291,691 + +0.4 291,691 + +0.6 291,691 + -1.5 291,691 + +0.1 291,692 - +0.2 291,692 - +0.3 291,727 + -0.6 291,727 + -0.3 291,727 + +0.3 291,727 + +0.1 291,728 - +1.5 291,728 - -0.2 291,728 - +0.3 291,728 - +0.1 291,744 + -0.2 291,744 + +0.4 291,745 - +0.1 291,745 - -0.4 291,745 - -0.3 291,787 + EX31_RS05695 0.11 -0.4 291,787 + EX31_RS05695 0.11 +0.5 291,788 - EX31_RS05695 0.11 -0.9 291,788 - EX31_RS05695 0.11 +0.3 291,823 + EX31_RS05695 0.18 -1.4 291,824 - EX31_RS05695 0.18 +0.4 291,864 - EX31_RS05695 0.25 -0.6 291,864 - EX31_RS05695 0.25 +1.0 291,889 + EX31_RS05695 0.30 +0.6 291,951 + EX31_RS05695 0.41 -0.3 291,951 + EX31_RS05695 0.41 +0.1 291,951 + EX31_RS05695 0.41 -0.3 291,952 - EX31_RS05695 0.41 -1.1 291,952 - EX31_RS05695 0.41 -0.9 291,965 - EX31_RS05695 0.44 -0.8
Or see this region's nucleotide sequence