Strain Fitness in Rahnella sp. WP5 around EX31_RS03125

Experiment: NL-CCM; high oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; high oxygen
106,638	+		EX31_RS03115	0.81	-0.0
106,661	-		EX31_RS03115	0.85	-0.7
106,661	-		EX31_RS03115	0.85	-0.1
106,670	+		EX31_RS03115	0.87	+0.0
106,671	-		EX31_RS03115	0.87	-0.2
106,672	+		EX31_RS03115	0.87	+0.1
106,672	+		EX31_RS03115	0.87	-0.5
106,672	+		EX31_RS03115	0.87	+0.2
106,672	+		EX31_RS03115	0.87	+0.2
106,673	-		EX31_RS03115	0.88	+0.4
106,673	-		EX31_RS03115	0.88	+1.6
106,673	-		EX31_RS03115	0.88	+0.2
106,673	-		EX31_RS03115	0.88	-2.4
106,705	+				-0.7
106,705	+				-0.2
106,705	+				+0.3
106,706	-				+0.2
106,706	-				-0.0
106,759	+				+0.2
106,866	-		EX31_RS03120	0.13	-0.5
106,951	-		EX31_RS03120	0.24	-0.6
106,976	-		EX31_RS03120	0.27	-1.0
106,985	+		EX31_RS03120	0.28	+0.3
106,985	+		EX31_RS03120	0.28	+1.2
106,986	-		EX31_RS03120	0.28	-0.7
106,986	-		EX31_RS03120	0.28	-0.3
106,986	-		EX31_RS03120	0.28	-0.3
107,026	+		EX31_RS03120	0.33	+0.5
107,026	+		EX31_RS03120	0.33	-2.1
107,027	-		EX31_RS03120	0.33	-0.4
107,102	+		EX31_RS03120	0.43	-0.2
107,113	+		EX31_RS03120	0.44	+0.2
107,113	+		EX31_RS03120	0.44	+0.3
107,113	+		EX31_RS03120	0.44	-1.2
107,113	+		EX31_RS03120	0.44	+0.1
107,114	-		EX31_RS03120	0.44	-0.6
107,195	+		EX31_RS03120	0.55	+0.1
107,195	+		EX31_RS03120	0.55	-0.3
107,195	+		EX31_RS03120	0.55	-0.5
107,196	-		EX31_RS03120	0.55	-2.3
107,199	+		EX31_RS03120	0.55	-1.3
107,200	-		EX31_RS03120	0.55	+0.3
107,212	+		EX31_RS03120	0.57	+0.3
107,213	-		EX31_RS03120	0.57	+0.6
107,324	+		EX31_RS03120	0.71	+0.5
107,342	-		EX31_RS03120	0.73	-0.1
107,431	+		EX31_RS03120	0.84	-0.6
107,438	+		EX31_RS03120	0.85	-0.4
107,439	-		EX31_RS03120	0.85	-0.3
107,442	+		EX31_RS03120	0.85	-0.1
107,442	+		EX31_RS03120	0.85	+1.4
107,442	+		EX31_RS03120	0.85	-0.0
107,442	+		EX31_RS03120	0.85	+0.2
107,442	+		EX31_RS03120	0.85	-0.4
107,443	-		EX31_RS03120	0.86	-0.6
107,443	-		EX31_RS03120	0.86	+0.7
107,443	-		EX31_RS03120	0.86	+0.1
107,443	-		EX31_RS03120	0.86	+0.2
107,443	-		EX31_RS03120	0.86	-0.3
107,443	-		EX31_RS03120	0.86	-0.1
107,621	+				+0.5
107,656	+				-0.1
107,656	+				-0.2
107,681	+				-0.2
107,682	-				+0.4
107,682	-				-0.1
107,682	-				-0.2
107,738	+				-1.0
107,738	+				-0.1
107,739	-				-0.2
107,739	-				-0.5
107,739	-				-0.1
107,792	+				-0.5
107,792	+				-0.3
107,793	-				-0.6
107,807	+				-0.2
107,808	-				+0.1
107,808	-				+0.1
107,808	-				-0.1
107,808	-				-0.1
107,808	-				-0.1
107,808	-				+0.0
107,852	-		EX31_RS03125	0.11	+0.1
107,994	-		EX31_RS03125	0.17	-0.2
107,994	-		EX31_RS03125	0.17	+0.2
107,994	-		EX31_RS03125	0.17	-0.7
108,032	+		EX31_RS03125	0.19	-0.8
108,032	+		EX31_RS03125	0.19	+0.2
108,032	+		EX31_RS03125	0.19	-0.4
108,033	-		EX31_RS03125	0.19	+0.4
108,033	-		EX31_RS03125	0.19	+0.7
108,033	-		EX31_RS03125	0.19	+0.4
108,033	-		EX31_RS03125	0.19	-0.7
108,041	+		EX31_RS03125	0.19	-0.0
108,042	-		EX31_RS03125	0.19	+0.7
108,044	+		EX31_RS03125	0.19	+1.2
108,045	-		EX31_RS03125	0.19	-0.4
108,045	-		EX31_RS03125	0.19	-1.1
108,045	-		EX31_RS03125	0.19	-1.1
108,137	+		EX31_RS03125	0.23	-0.4
108,137	+		EX31_RS03125	0.23	+0.3
108,137	+		EX31_RS03125	0.23	-0.5
108,137	+		EX31_RS03125	0.23	+0.2
108,197	+		EX31_RS03125	0.25	-1.2
108,197	+		EX31_RS03125	0.25	+0.4
108,207	-		EX31_RS03125	0.26	+0.0
108,251	+		EX31_RS03125	0.28	-0.5
108,252	-		EX31_RS03125	0.28	+0.3
108,252	-		EX31_RS03125	0.28	+0.1
108,292	+		EX31_RS03125	0.29	-1.0
108,292	+		EX31_RS03125	0.29	+1.3
108,293	-		EX31_RS03125	0.29	-0.8
108,328	+		EX31_RS03125	0.31	-0.2
108,359	+		EX31_RS03125	0.32	+0.6
108,374	+		EX31_RS03125	0.33	+0.1
108,374	+		EX31_RS03125	0.33	+0.9
108,374	+		EX31_RS03125	0.33	+0.2
108,375	-		EX31_RS03125	0.33	-1.8
108,375	-		EX31_RS03125	0.33	-0.2
108,439	+		EX31_RS03125	0.35	-0.3
108,439	+		EX31_RS03125	0.35	-0.6
108,440	-		EX31_RS03125	0.35	+0.6
108,440	-		EX31_RS03125	0.35	-1.5
108,440	-		EX31_RS03125	0.35	+0.2
108,442	+		EX31_RS03125	0.35	-0.0
108,442	+		EX31_RS03125	0.35	+0.4
108,443	-		EX31_RS03125	0.35	-0.3
108,443	-		EX31_RS03125	0.35	-0.6
108,463	+		EX31_RS03125	0.36	-0.5
108,463	+		EX31_RS03125	0.36	-0.4
108,482	+		EX31_RS03125	0.37	+0.4
108,482	+		EX31_RS03125	0.37	-0.7
108,482	+		EX31_RS03125	0.37	-1.3
108,482	+		EX31_RS03125	0.37	-0.1
108,482	+		EX31_RS03125	0.37	+0.4
108,483	-		EX31_RS03125	0.37	-0.4
108,483	-		EX31_RS03125	0.37	+0.3
108,484	+		EX31_RS03125	0.37	-0.5
108,485	-		EX31_RS03125	0.37	-0.5
108,485	-		EX31_RS03125	0.37	-0.5
108,560	+		EX31_RS03125	0.40	-0.8
108,621	+		EX31_RS03125	0.43	-1.0
108,621	+		EX31_RS03125	0.43	+1.2
108,621	+		EX31_RS03125	0.43	+0.2
108,621	+		EX31_RS03125	0.43	+1.3
108,621	+		EX31_RS03125	0.43	-0.8
108,622	-		EX31_RS03125	0.43	-0.0
108,622	-		EX31_RS03125	0.43	+0.4
108,622	-		EX31_RS03125	0.43	-0.1
108,622	-		EX31_RS03125	0.43	-0.0
108,625	+		EX31_RS03125	0.43	+0.4
108,625	+		EX31_RS03125	0.43	+0.2
108,626	-		EX31_RS03125	0.43	-0.3
108,626	-		EX31_RS03125	0.43	-0.7
108,632	+		EX31_RS03125	0.43	+0.2
108,632	+		EX31_RS03125	0.43	-0.3
108,633	-		EX31_RS03125	0.43	-0.2
108,661	+		EX31_RS03125	0.44	+0.6
108,662	-		EX31_RS03125	0.44	+1.3
108,662	-		EX31_RS03125	0.44	-0.4
108,681	-		EX31_RS03125	0.45	+0.1
108,701	+		EX31_RS03125	0.46	-0.2
108,701	+		EX31_RS03125	0.46	+0.4
108,732	+		EX31_RS03125	0.47	-0.7
108,778	+		EX31_RS03125	0.49	-0.5
108,814	+		EX31_RS03125	0.51	-0.6
108,815	-		EX31_RS03125	0.51	-0.1
108,870	-		EX31_RS03125	0.53	-0.0
108,881	+		EX31_RS03125	0.53	-0.8
108,882	-		EX31_RS03125	0.53	+0.7
108,887	+		EX31_RS03125	0.54	-1.3
108,887	+		EX31_RS03125	0.54	-1.2
108,887	+		EX31_RS03125	0.54	+0.0
108,887	+		EX31_RS03125	0.54	-0.2
108,887	+		EX31_RS03125	0.54	+0.3
108,888	-		EX31_RS03125	0.54	-0.3
108,888	-		EX31_RS03125	0.54	-0.3
108,890	+		EX31_RS03125	0.54	-0.9
108,959	+		EX31_RS03125	0.56	-0.3
108,960	-		EX31_RS03125	0.57	-0.0
108,960	-		EX31_RS03125	0.57	-0.6
108,960	-		EX31_RS03125	0.57	+0.4
109,055	+		EX31_RS03125	0.60	-0.2
109,055	+		EX31_RS03125	0.60	-0.3
109,055	+		EX31_RS03125	0.60	-0.6
109,055	+		EX31_RS03125	0.60	-0.7
109,055	+		EX31_RS03125	0.60	+0.2
109,055	+		EX31_RS03125	0.60	+0.2
109,055	+		EX31_RS03125	0.60	-2.5
109,056	-		EX31_RS03125	0.60	-1.5
109,056	-		EX31_RS03125	0.60	+0.4
109,056	-		EX31_RS03125	0.60	-0.2
109,056	-		EX31_RS03125	0.60	-0.6
109,070	+		EX31_RS03125	0.61	+0.4
109,070	+		EX31_RS03125	0.61	-0.2
109,070	+		EX31_RS03125	0.61	-0.9
109,071	-		EX31_RS03125	0.61	-0.5
109,071	-		EX31_RS03125	0.61	-1.2
109,153	+		EX31_RS03125	0.64	-0.7
109,176	-		EX31_RS03125	0.65	-0.1
109,222	+		EX31_RS03125	0.67	+0.1
109,222	+		EX31_RS03125	0.67	-0.3
109,222	+		EX31_RS03125	0.67	+0.3
109,222	+		EX31_RS03125	0.67	-0.5
109,223	-		EX31_RS03125	0.67	+0.3
109,223	-		EX31_RS03125	0.67	-1.2
109,259	+		EX31_RS03125	0.69	+0.7
109,260	-		EX31_RS03125	0.69	-1.9
109,260	-		EX31_RS03125	0.69	-0.4
109,260	-		EX31_RS03125	0.69	-0.2
109,260	-		EX31_RS03125	0.69	-0.3
109,325	+		EX31_RS03125	0.71	+0.5
109,347	-		EX31_RS03125	0.72	-0.0
109,347	-		EX31_RS03125	0.72	+0.1
109,403	+		EX31_RS03125	0.75	+1.3
109,403	+		EX31_RS03125	0.75	-0.1
109,422	-		EX31_RS03125	0.75	-0.7
109,505	-		EX31_RS03125	0.79	-0.3
109,512	+		EX31_RS03125	0.79	+0.5
109,512	+		EX31_RS03125	0.79	+0.6
109,512	+		EX31_RS03125	0.79	+0.3
109,512	+		EX31_RS03125	0.79	-1.2
109,513	-		EX31_RS03125	0.79	+0.1
109,517	-		EX31_RS03125	0.79	+0.0
109,517	-		EX31_RS03125	0.79	-0.3
109,613	+		EX31_RS03125	0.83	+0.3
109,613	+		EX31_RS03125	0.83	-0.1
109,613	+		EX31_RS03125	0.83	+0.2
109,613	+		EX31_RS03125	0.83	+1.1
109,614	-		EX31_RS03125	0.83	-0.1
109,614	-		EX31_RS03125	0.83	+0.4
109,614	-		EX31_RS03125	0.83	-0.9
109,678	+		EX31_RS03125	0.86	-0.2
109,753	+		EX31_RS03125	0.89	+0.7
109,754	-		EX31_RS03125	0.89	+0.2
109,804	+				-1.5
109,856	+				+0.2
109,856	+				+0.9
109,856	+				+0.4
109,856	+				-0.3
109,856	+				-0.1
109,857	-				-0.2
109,857	-				+0.5
109,869	+				-0.1
109,870	-				+1.2
109,870	-				-0.3
109,870	-				+0.3
110,014	+				+0.4
110,054	+				-0.2
110,077	-				-0.5
110,077	-				-1.4
110,124	+		EX31_RS03130	0.11	-0.4
110,125	-		EX31_RS03130	0.11	+0.1
110,125	-		EX31_RS03130	0.11	-0.8
110,125	-		EX31_RS03130	0.11	+0.6
110,192	+		EX31_RS03130	0.18	-1.6
110,192	+		EX31_RS03130	0.18	+0.5
110,192	+		EX31_RS03130	0.18	-0.4
110,192	+		EX31_RS03130	0.18	-0.5
110,193	-		EX31_RS03130	0.18	+0.1
110,193	-		EX31_RS03130	0.18	+0.8
110,193	-		EX31_RS03130	0.18	+0.2
110,193	-		EX31_RS03130	0.18	-0.1
110,199	+		EX31_RS03130	0.18	-0.1
110,200	-		EX31_RS03130	0.19	+0.0
110,200	-		EX31_RS03130	0.19	+0.3
110,214	+		EX31_RS03130	0.20	-0.2
110,232	+		EX31_RS03130	0.22	+0.2
110,233	-		EX31_RS03130	0.22	-0.7
110,233	-		EX31_RS03130	0.22	-0.9
110,290	+		EX31_RS03130	0.28	-1.3
110,291	-		EX31_RS03130	0.28	-0.0
110,311	+		EX31_RS03130	0.30	-0.2
110,311	+		EX31_RS03130	0.30	+0.5
110,311	+		EX31_RS03130	0.30	-0.9
110,315	+		EX31_RS03130	0.30	+0.9
110,357	-		EX31_RS03130	0.35	-0.3
110,357	-		EX31_RS03130	0.35	+1.1
110,358	+		EX31_RS03130	0.35	-0.0
110,358	+		EX31_RS03130	0.35	+0.2
110,358	+		EX31_RS03130	0.35	-0.5
110,359	-		EX31_RS03130	0.35	+0.5
110,371	-		EX31_RS03130	0.36	-0.6
110,438	+		EX31_RS03130	0.43	-0.2
110,438	+		EX31_RS03130	0.43	+0.1
110,438	+		EX31_RS03130	0.43	-1.0
110,439	-		EX31_RS03130	0.43	+0.1
110,439	-		EX31_RS03130	0.43	-0.0
110,446	+		EX31_RS03130	0.44	-0.6
110,446	+		EX31_RS03130	0.44	-1.2
110,446	+		EX31_RS03130	0.44	-0.3
110,447	-		EX31_RS03130	0.44	-0.3
110,488	+		EX31_RS03130	0.48	-1.0
110,488	+		EX31_RS03130	0.48	-0.1
110,488	+		EX31_RS03130	0.48	-0.3
110,488	+		EX31_RS03130	0.48	-0.9
110,488	+		EX31_RS03130	0.48	-0.9
110,489	-		EX31_RS03130	0.48	-0.4
110,489	-		EX31_RS03130	0.48	-0.0
110,489	-		EX31_RS03130	0.48	-0.2
110,489	-		EX31_RS03130	0.48	-0.2
110,489	-		EX31_RS03130	0.48	-0.5
110,489	-		EX31_RS03130	0.48	-0.0
110,490	+		EX31_RS03130	0.49	-2.1
110,490	+		EX31_RS03130	0.49	-0.5
110,490	+		EX31_RS03130	0.49	-1.2
110,491	-		EX31_RS03130	0.49	-0.3
110,491	-		EX31_RS03130	0.49	-0.4
110,549	+		EX31_RS03130	0.55	+0.9
110,549	+		EX31_RS03130	0.55	-1.6
110,549	+		EX31_RS03130	0.55	+0.4
110,549	+		EX31_RS03130	0.55	-0.7
110,550	-		EX31_RS03130	0.55	-0.1
110,550	-		EX31_RS03130	0.55	+0.3
110,550	-		EX31_RS03130	0.55	-0.1
110,550	-		EX31_RS03130	0.55	+0.5
110,550	-		EX31_RS03130	0.55	-0.1
110,550	-		EX31_RS03130	0.55	-1.1
110,550	-		EX31_RS03130	0.55	+0.3
110,620	+		EX31_RS03130	0.62	+0.3
110,620	+		EX31_RS03130	0.62	+0.0
110,620	+		EX31_RS03130	0.62	-0.1
110,620	+		EX31_RS03130	0.62	-0.5
110,620	+		EX31_RS03130	0.62	+0.4
110,623	-		EX31_RS03130	0.62	+0.2
110,623	-		EX31_RS03130	0.62	-1.4
110,694	+		EX31_RS03130	0.70	-0.0
110,694	+		EX31_RS03130	0.70	-0.3
110,694	+		EX31_RS03130	0.70	-0.3
110,694	+		EX31_RS03130	0.70	-1.3
110,695	-		EX31_RS03130	0.70	-1.4
110,695	-		EX31_RS03130	0.70	+0.0
110,698	-		EX31_RS03130	0.70	+0.8
110,698	-		EX31_RS03130	0.70	-1.6
110,698	-		EX31_RS03130	0.70	-0.9
110,706	-		EX31_RS03130	0.71	+0.5
110,729	-		EX31_RS03130	0.73	+0.1
110,729	-		EX31_RS03130	0.73	-0.1
110,829	+		EX31_RS03130	0.83	+0.2
110,830	-		EX31_RS03130	0.84	-0.3
110,905	+				-0.2
110,905	+				+0.2
110,905	+				-0.4
110,906	-				-0.3
110,906	-				-0.1
110,906	-				+1.0
110,907	+				+0.4
110,907	+				+0.8
110,907	+				+0.5
110,908	-				-0.4
110,908	-				-0.7
110,919	-				-0.6
110,919	-				+0.4
110,949	+				+0.8
110,949	+				-0.7
110,950	-				+0.1
110,950	-				+0.1
110,953	+				+0.5
110,953	+				+0.6
110,953	+				+0.4
110,953	+				-0.4
110,953	+				+0.0
110,954	-				+0.7
110,954	-				+0.7
110,954	-				+0.4
110,954	-				-0.9
110,954	-				+0.3
110,954	-				-0.5
110,954	-				+0.1
110,954	-				-0.4
110,954	-				+1.2
110,983	+				-0.7
110,983	+				-0.1
110,983	+				-0.4
110,983	+				-1.1
110,984	-				-0.2
110,984	-				+0.7
110,984	-				-0.0
110,984	-				-0.1
110,984	-				-0.5
110,984	-				-0.7
110,984	-				-0.1
110,984	-				+0.5
110,984	-				-0.2