Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03065 and EX31_RS03070 are separated by 289 nucleotides EX31_RS03070 and EX31_RS03075 are separated by 262 nucleotides EX31_RS03075 and EX31_RS03080 are separated by 142 nucleotides EX31_RS03080 and EX31_RS03085 are separated by 22 nucleotides
EX31_RS03065: EX31_RS03065 - chitinase, at 94,786 to 96,570
_RS03065
EX31_RS03070: EX31_RS03070 - hypothetical protein, at 96,860 to 97,126
_RS03070
EX31_RS03075: EX31_RS03075 - LysR family transcriptional regulator, at 97,389 to 98,330
_RS03075
EX31_RS03080: EX31_RS03080 - glycoside hydrolase family 108 protein, at 98,473 to 99,015
_RS03080
EX31_RS03085: EX31_RS03085 - hypothetical protein, at 99,038 to 99,484
_RS03085
Position (kb) 97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 96.470 kb on + strand at 96.470 kb on + strand at 96.470 kb on + strand at 96.471 kb on - strand at 96.471 kb on - strand at 96.531 kb on + strand at 96.531 kb on + strand at 96.532 kb on - strand at 96.548 kb on + strand at 96.552 kb on + strand at 96.552 kb on + strand at 96.559 kb on - strand at 96.571 kb on - strand at 96.582 kb on + strand at 96.583 kb on - strand at 96.583 kb on - strand at 96.584 kb on + strand at 96.587 kb on - strand at 96.587 kb on - strand at 96.696 kb on - strand at 96.719 kb on + strand at 96.742 kb on + strand at 96.743 kb on - strand at 96.762 kb on + strand at 96.819 kb on + strand at 96.820 kb on - strand at 96.820 kb on - strand at 96.823 kb on + strand at 96.841 kb on - strand at 96.947 kb on + strand, within EX31_RS03070 at 96.948 kb on - strand, within EX31_RS03070 at 96.974 kb on - strand, within EX31_RS03070 at 97.056 kb on + strand, within EX31_RS03070 at 97.057 kb on - strand, within EX31_RS03070 at 97.127 kb on - strand at 97.134 kb on - strand at 97.145 kb on + strand at 97.356 kb on - strand at 97.366 kb on - strand at 97.472 kb on - strand at 97.549 kb on + strand, within EX31_RS03075 at 97.550 kb on - strand, within EX31_RS03075 at 97.611 kb on - strand, within EX31_RS03075 at 97.634 kb on - strand, within EX31_RS03075 at 97.634 kb on - strand, within EX31_RS03075 at 97.697 kb on + strand, within EX31_RS03075 at 97.708 kb on + strand, within EX31_RS03075 at 97.708 kb on + strand, within EX31_RS03075 at 97.709 kb on - strand, within EX31_RS03075 at 97.709 kb on - strand, within EX31_RS03075 at 97.721 kb on + strand, within EX31_RS03075 at 97.723 kb on + strand, within EX31_RS03075 at 97.744 kb on + strand, within EX31_RS03075 at 97.745 kb on - strand, within EX31_RS03075 at 97.747 kb on + strand, within EX31_RS03075 at 97.748 kb on - strand, within EX31_RS03075 at 97.790 kb on + strand, within EX31_RS03075 at 97.834 kb on - strand, within EX31_RS03075 at 97.982 kb on - strand, within EX31_RS03075 at 97.999 kb on + strand, within EX31_RS03075 at 98.000 kb on - strand, within EX31_RS03075 at 98.035 kb on - strand, within EX31_RS03075 at 98.070 kb on + strand, within EX31_RS03075 at 98.070 kb on + strand, within EX31_RS03075 at 98.085 kb on - strand, within EX31_RS03075 at 98.195 kb on + strand, within EX31_RS03075 at 98.195 kb on + strand, within EX31_RS03075 at 98.196 kb on - strand, within EX31_RS03075 at 98.211 kb on + strand, within EX31_RS03075 at 98.284 kb on - strand at 98.335 kb on + strand at 98.420 kb on + strand at 98.445 kb on - strand at 98.527 kb on - strand at 98.550 kb on - strand, within EX31_RS03080 at 98.571 kb on + strand, within EX31_RS03080 at 98.571 kb on + strand, within EX31_RS03080 at 98.571 kb on + strand, within EX31_RS03080 at 98.572 kb on - strand, within EX31_RS03080 at 98.574 kb on + strand, within EX31_RS03080 at 98.574 kb on + strand, within EX31_RS03080 at 98.575 kb on - strand, within EX31_RS03080 at 98.575 kb on - strand, within EX31_RS03080 at 98.575 kb on - strand, within EX31_RS03080 at 98.681 kb on + strand, within EX31_RS03080 at 98.681 kb on + strand, within EX31_RS03080 at 98.684 kb on + strand, within EX31_RS03080 at 98.684 kb on + strand, within EX31_RS03080 at 98.685 kb on - strand, within EX31_RS03080 at 98.685 kb on - strand, within EX31_RS03080 at 98.685 kb on - strand, within EX31_RS03080 at 98.685 kb on - strand, within EX31_RS03080 at 98.685 kb on - strand, within EX31_RS03080 at 98.700 kb on + strand, within EX31_RS03080 at 98.700 kb on + strand, within EX31_RS03080 at 98.700 kb on + strand, within EX31_RS03080 at 98.700 kb on + strand, within EX31_RS03080 at 98.701 kb on - strand, within EX31_RS03080 at 98.701 kb on - strand, within EX31_RS03080 at 98.704 kb on + strand, within EX31_RS03080 at 98.704 kb on + strand, within EX31_RS03080 at 98.704 kb on + strand, within EX31_RS03080 at 98.705 kb on - strand, within EX31_RS03080 at 98.825 kb on + strand, within EX31_RS03080 at 98.831 kb on + strand, within EX31_RS03080 at 98.831 kb on + strand, within EX31_RS03080 at 98.831 kb on + strand, within EX31_RS03080 at 98.832 kb on - strand, within EX31_RS03080 at 98.852 kb on + strand, within EX31_RS03080 at 98.852 kb on + strand, within EX31_RS03080 at 98.852 kb on + strand, within EX31_RS03080 at 98.853 kb on - strand, within EX31_RS03080 at 98.853 kb on - strand, within EX31_RS03080 at 98.853 kb on - strand, within EX31_RS03080 at 98.853 kb on - strand, within EX31_RS03080 at 98.853 kb on - strand, within EX31_RS03080 at 98.853 kb on - strand, within EX31_RS03080 at 98.853 kb on - strand, within EX31_RS03080 at 98.889 kb on + strand, within EX31_RS03080 at 98.891 kb on + strand, within EX31_RS03080 at 98.891 kb on + strand, within EX31_RS03080 at 98.891 kb on + strand, within EX31_RS03080 at 98.891 kb on + strand, within EX31_RS03080 at 98.891 kb on + strand, within EX31_RS03080 at 98.892 kb on - strand, within EX31_RS03080 at 98.892 kb on - strand, within EX31_RS03080 at 98.892 kb on - strand, within EX31_RS03080 at 98.892 kb on - strand, within EX31_RS03080 at 98.892 kb on - strand, within EX31_RS03080 at 98.897 kb on + strand, within EX31_RS03080 at 98.897 kb on + strand, within EX31_RS03080 at 98.922 kb on + strand, within EX31_RS03080 at 98.946 kb on + strand, within EX31_RS03080 at 98.962 kb on + strand at 98.962 kb on + strand at 98.963 kb on - strand at 98.963 kb on - strand at 98.963 kb on - strand at 98.963 kb on - strand at 98.963 kb on - strand at 98.963 kb on - strand at 98.963 kb on - strand at 98.963 kb on - strand at 98.966 kb on + strand at 98.967 kb on - strand at 98.995 kb on - strand at 99.015 kb on + strand at 99.015 kb on + strand at 99.015 kb on + strand at 99.015 kb on + strand at 99.016 kb on - strand at 99.016 kb on - strand at 99.016 kb on - strand at 99.016 kb on - strand at 99.080 kb on + strand at 99.108 kb on - strand, within EX31_RS03085 at 99.138 kb on - strand, within EX31_RS03085 at 99.138 kb on - strand, within EX31_RS03085 at 99.173 kb on - strand, within EX31_RS03085 at 99.202 kb on + strand, within EX31_RS03085 at 99.202 kb on + strand, within EX31_RS03085 at 99.203 kb on - strand, within EX31_RS03085 at 99.248 kb on + strand, within EX31_RS03085 at 99.248 kb on + strand, within EX31_RS03085 at 99.253 kb on - strand, within EX31_RS03085 at 99.253 kb on - strand, within EX31_RS03085
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 96,470 + +1.6 96,470 + -0.7 96,470 + -1.5 96,471 - -2.0 96,471 - -0.2 96,531 + -0.6 96,531 + +0.9 96,532 - -0.2 96,548 + -0.3 96,552 + +0.4 96,552 + -0.7 96,559 - -0.4 96,571 - +0.2 96,582 + -0.9 96,583 - +0.2 96,583 - +0.2 96,584 + +0.7 96,587 - -0.6 96,587 - -1.2 96,696 - +0.4 96,719 + -0.5 96,742 + +0.9 96,743 - -1.0 96,762 + +1.1 96,819 + +0.3 96,820 - +0.1 96,820 - +0.6 96,823 + -0.4 96,841 - -0.4 96,947 + EX31_RS03070 0.33 -0.1 96,948 - EX31_RS03070 0.33 +1.3 96,974 - EX31_RS03070 0.43 +0.1 97,056 + EX31_RS03070 0.73 +0.0 97,057 - EX31_RS03070 0.74 -0.4 97,127 - -0.2 97,134 - +0.4 97,145 + -0.4 97,356 - -0.6 97,366 - +0.3 97,472 - -0.1 97,549 + EX31_RS03075 0.17 +0.7 97,550 - EX31_RS03075 0.17 -0.9 97,611 - EX31_RS03075 0.24 -0.7 97,634 - EX31_RS03075 0.26 -0.6 97,634 - EX31_RS03075 0.26 -1.0 97,697 + EX31_RS03075 0.33 -1.1 97,708 + EX31_RS03075 0.34 -2.4 97,708 + EX31_RS03075 0.34 -0.2 97,709 - EX31_RS03075 0.34 -0.2 97,709 - EX31_RS03075 0.34 -0.8 97,721 + EX31_RS03075 0.35 -0.5 97,723 + EX31_RS03075 0.35 -0.1 97,744 + EX31_RS03075 0.38 +1.0 97,745 - EX31_RS03075 0.38 -0.2 97,747 + EX31_RS03075 0.38 -0.2 97,748 - EX31_RS03075 0.38 -0.9 97,790 + EX31_RS03075 0.43 -0.7 97,834 - EX31_RS03075 0.47 -1.8 97,982 - EX31_RS03075 0.63 -0.7 97,999 + EX31_RS03075 0.65 -1.1 98,000 - EX31_RS03075 0.65 -0.1 98,035 - EX31_RS03075 0.69 +0.4 98,070 + EX31_RS03075 0.72 -1.2 98,070 + EX31_RS03075 0.72 -0.6 98,085 - EX31_RS03075 0.74 -0.8 98,195 + EX31_RS03075 0.86 -0.8 98,195 + EX31_RS03075 0.86 -0.7 98,196 - EX31_RS03075 0.86 -0.3 98,211 + EX31_RS03075 0.87 -1.0 98,284 - +0.9 98,335 + -0.6 98,420 + -0.2 98,445 - -0.6 98,527 - -0.6 98,550 - EX31_RS03080 0.14 -0.5 98,571 + EX31_RS03080 0.18 +0.6 98,571 + EX31_RS03080 0.18 +0.6 98,571 + EX31_RS03080 0.18 -0.8 98,572 - EX31_RS03080 0.18 -0.1 98,574 + EX31_RS03080 0.19 +1.6 98,574 + EX31_RS03080 0.19 -2.6 98,575 - EX31_RS03080 0.19 +1.8 98,575 - EX31_RS03080 0.19 -0.2 98,575 - EX31_RS03080 0.19 -0.4 98,681 + EX31_RS03080 0.38 +0.4 98,681 + EX31_RS03080 0.38 -0.9 98,684 + EX31_RS03080 0.39 +0.5 98,684 + EX31_RS03080 0.39 +0.1 98,685 - EX31_RS03080 0.39 +1.3 98,685 - EX31_RS03080 0.39 +0.2 98,685 - EX31_RS03080 0.39 +0.4 98,685 - EX31_RS03080 0.39 +0.1 98,685 - EX31_RS03080 0.39 +0.3 98,700 + EX31_RS03080 0.42 -0.4 98,700 + EX31_RS03080 0.42 -0.9 98,700 + EX31_RS03080 0.42 +0.2 98,700 + EX31_RS03080 0.42 +0.1 98,701 - EX31_RS03080 0.42 -0.1 98,701 - EX31_RS03080 0.42 -1.1 98,704 + EX31_RS03080 0.43 -0.8 98,704 + EX31_RS03080 0.43 -0.8 98,704 + EX31_RS03080 0.43 +0.2 98,705 - EX31_RS03080 0.43 +3.6 98,825 + EX31_RS03080 0.65 -1.4 98,831 + EX31_RS03080 0.66 +0.6 98,831 + EX31_RS03080 0.66 -0.1 98,831 + EX31_RS03080 0.66 +0.1 98,832 - EX31_RS03080 0.66 -0.7 98,852 + EX31_RS03080 0.70 -0.8 98,852 + EX31_RS03080 0.70 -0.2 98,852 + EX31_RS03080 0.70 +0.1 98,853 - EX31_RS03080 0.70 +0.5 98,853 - EX31_RS03080 0.70 -0.0 98,853 - EX31_RS03080 0.70 +0.3 98,853 - EX31_RS03080 0.70 +0.5 98,853 - EX31_RS03080 0.70 +0.6 98,853 - EX31_RS03080 0.70 +0.2 98,853 - EX31_RS03080 0.70 +1.4 98,889 + EX31_RS03080 0.77 -0.1 98,891 + EX31_RS03080 0.77 +0.3 98,891 + EX31_RS03080 0.77 -0.9 98,891 + EX31_RS03080 0.77 -0.1 98,891 + EX31_RS03080 0.77 +0.6 98,891 + EX31_RS03080 0.77 -0.4 98,892 - EX31_RS03080 0.77 +0.6 98,892 - EX31_RS03080 0.77 -1.5 98,892 - EX31_RS03080 0.77 +0.9 98,892 - EX31_RS03080 0.77 +0.4 98,892 - EX31_RS03080 0.77 -0.5 98,897 + EX31_RS03080 0.78 -0.4 98,897 + EX31_RS03080 0.78 -0.4 98,922 + EX31_RS03080 0.83 -0.5 98,946 + EX31_RS03080 0.87 -1.1 98,962 + -0.5 98,962 + -0.2 98,963 - +0.6 98,963 - -0.4 98,963 - +0.1 98,963 - +1.3 98,963 - +0.3 98,963 - -0.2 98,963 - -1.3 98,963 - +0.5 98,966 + -0.5 98,967 - +0.2 98,995 - -0.6 99,015 + -0.6 99,015 + +0.2 99,015 + -0.3 99,015 + +0.5 99,016 - -0.3 99,016 - -1.2 99,016 - -0.2 99,016 - +0.1 99,080 + -0.5 99,108 - EX31_RS03085 0.16 +0.8 99,138 - EX31_RS03085 0.22 -0.3 99,138 - EX31_RS03085 0.22 -1.4 99,173 - EX31_RS03085 0.30 +0.2 99,202 + EX31_RS03085 0.37 -0.3 99,202 + EX31_RS03085 0.37 +0.1 99,203 - EX31_RS03085 0.37 +0.3 99,248 + EX31_RS03085 0.47 -0.5 99,248 + EX31_RS03085 0.47 -0.4 99,253 - EX31_RS03085 0.48 -0.0 99,253 - EX31_RS03085 0.48 -0.6
Or see this region's nucleotide sequence