Strain Fitness in Rahnella sp. WP5 around EX31_RS02920

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS02915 and EX31_RS02920 are separated by 25 nucleotidesEX31_RS02920 and EX31_RS02925 are separated by 80 nucleotides EX31_RS02915: EX31_RS02915 - glycosyltransferase family 4 protein, at 60,830 to 61,813 _RS02915 EX31_RS02920: EX31_RS02920 - glycosyltransferase, at 61,839 to 62,996 _RS02920 EX31_RS02925: EX31_RS02925 - polysaccharide biosynthesis tyrosine autokinase, at 63,077 to 65,257 _RS02925 Position (kb) 61 62 63Strain fitness (log2 ratio) -2 -1 0 1at 61.045 kb on + strand, within EX31_RS02915at 61.046 kb on - strand, within EX31_RS02915at 61.138 kb on - strand, within EX31_RS02915at 61.138 kb on - strand, within EX31_RS02915at 61.146 kb on - strand, within EX31_RS02915at 61.162 kb on + strand, within EX31_RS02915at 61.208 kb on - strand, within EX31_RS02915at 61.357 kb on + strand, within EX31_RS02915at 61.360 kb on - strand, within EX31_RS02915at 61.360 kb on - strand, within EX31_RS02915at 61.480 kb on + strand, within EX31_RS02915at 61.516 kb on + strand, within EX31_RS02915at 61.517 kb on - strand, within EX31_RS02915at 61.517 kb on - strand, within EX31_RS02915at 61.562 kb on + strand, within EX31_RS02915at 61.563 kb on - strand, within EX31_RS02915at 61.591 kb on + strand, within EX31_RS02915at 61.591 kb on + strand, within EX31_RS02915at 62.429 kb on - strand, within EX31_RS02920at 62.433 kb on - strand, within EX31_RS02920at 62.433 kb on - strand, within EX31_RS02920at 62.644 kb on - strand, within EX31_RS02920at 62.881 kb on - strandat 63.141 kb on + strandat 63.142 kb on - strandat 63.142 kb on - strandat 63.320 kb on - strand, within EX31_RS02925at 63.367 kb on + strand, within EX31_RS02925at 63.368 kb on - strand, within EX31_RS02925at 63.420 kb on - strand, within EX31_RS02925at 63.485 kb on + strand, within EX31_RS02925at 63.485 kb on + strand, within EX31_RS02925at 63.486 kb on - strand, within EX31_RS02925at 63.486 kb on - strand, within EX31_RS02925at 63.522 kb on + strand, within EX31_RS02925at 63.541 kb on + strand, within EX31_RS02925at 63.542 kb on - strand, within EX31_RS02925at 63.672 kb on - strand, within EX31_RS02925at 63.674 kb on - strand, within EX31_RS02925at 63.676 kb on + strand, within EX31_RS02925at 63.677 kb on - strand, within EX31_RS02925at 63.815 kb on + strand, within EX31_RS02925at 63.972 kb on - strand, within EX31_RS02925

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
61,045 + EX31_RS02915 0.22 -2.0
61,046 - EX31_RS02915 0.22 +0.2
61,138 - EX31_RS02915 0.31 -0.1
61,138 - EX31_RS02915 0.31 -0.2
61,146 - EX31_RS02915 0.32 +0.6
61,162 + EX31_RS02915 0.34 -0.4
61,208 - EX31_RS02915 0.38 -0.5
61,357 + EX31_RS02915 0.54 +0.2
61,360 - EX31_RS02915 0.54 +0.5
61,360 - EX31_RS02915 0.54 -0.5
61,480 + EX31_RS02915 0.66 -2.0
61,516 + EX31_RS02915 0.70 +0.2
61,517 - EX31_RS02915 0.70 -0.5
61,517 - EX31_RS02915 0.70 +0.2
61,562 + EX31_RS02915 0.74 -0.7
61,563 - EX31_RS02915 0.74 +0.4
61,591 + EX31_RS02915 0.77 -0.3
61,591 + EX31_RS02915 0.77 +0.4
62,429 - EX31_RS02920 0.51 -0.5
62,433 - EX31_RS02920 0.51 -2.1
62,433 - EX31_RS02920 0.51 +0.2
62,644 - EX31_RS02920 0.70 -0.6
62,881 - -0.4
63,141 + -1.0
63,142 - -1.1
63,142 - -0.1
63,320 - EX31_RS02925 0.11 +1.0
63,367 + EX31_RS02925 0.13 -1.0
63,368 - EX31_RS02925 0.13 -0.6
63,420 - EX31_RS02925 0.16 +0.2
63,485 + EX31_RS02925 0.19 -0.9
63,485 + EX31_RS02925 0.19 -1.1
63,486 - EX31_RS02925 0.19 +0.4
63,486 - EX31_RS02925 0.19 -1.4
63,522 + EX31_RS02925 0.20 -0.6
63,541 + EX31_RS02925 0.21 -1.8
63,542 - EX31_RS02925 0.21 -0.3
63,672 - EX31_RS02925 0.27 +1.2
63,674 - EX31_RS02925 0.27 -1.1
63,676 + EX31_RS02925 0.27 +0.1
63,677 - EX31_RS02925 0.28 -0.6
63,815 + EX31_RS02925 0.34 -0.9
63,972 - EX31_RS02925 0.41 -2.0

Or see this region's nucleotide sequence