Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02770 and EX31_RS02775 overlap by 14 nucleotides EX31_RS02775 and EX31_RS02780 are separated by 7 nucleotides
EX31_RS02770: EX31_RS02770 - glycosyltransferase, at 23,388 to 24,473
_RS02770
EX31_RS02775: EX31_RS02775 - hypothetical protein, at 24,460 to 25,683
_RS02775
EX31_RS02780: EX31_RS02780 - oligosaccharide flippase family protein, at 25,691 to 26,908
_RS02780
Position (kb) 24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 23.490 kb on + strand at 23.490 kb on + strand at 23.490 kb on + strand at 23.490 kb on + strand at 23.491 kb on - strand at 23.543 kb on + strand, within EX31_RS02770 at 23.561 kb on + strand, within EX31_RS02770 at 23.619 kb on - strand, within EX31_RS02770 at 23.680 kb on - strand, within EX31_RS02770 at 23.685 kb on + strand, within EX31_RS02770 at 23.718 kb on - strand, within EX31_RS02770 at 23.718 kb on - strand, within EX31_RS02770 at 23.758 kb on - strand, within EX31_RS02770 at 23.827 kb on - strand, within EX31_RS02770 at 23.827 kb on - strand, within EX31_RS02770 at 23.827 kb on - strand, within EX31_RS02770 at 23.884 kb on - strand, within EX31_RS02770 at 23.961 kb on - strand, within EX31_RS02770 at 23.973 kb on - strand, within EX31_RS02770 at 23.973 kb on - strand, within EX31_RS02770 at 23.999 kb on + strand, within EX31_RS02770 at 24.000 kb on - strand, within EX31_RS02770 at 24.000 kb on - strand, within EX31_RS02770 at 24.027 kb on + strand, within EX31_RS02770 at 24.179 kb on - strand, within EX31_RS02770 at 24.227 kb on - strand, within EX31_RS02770 at 24.492 kb on - strand at 24.492 kb on - strand at 24.500 kb on - strand at 24.539 kb on - strand at 24.694 kb on + strand, within EX31_RS02775 at 24.745 kb on + strand, within EX31_RS02775 at 24.747 kb on - strand, within EX31_RS02775 at 24.797 kb on + strand, within EX31_RS02775 at 24.797 kb on + strand, within EX31_RS02775 at 24.797 kb on + strand, within EX31_RS02775 at 24.798 kb on - strand, within EX31_RS02775 at 24.828 kb on + strand, within EX31_RS02775 at 25.421 kb on + strand, within EX31_RS02775 at 25.479 kb on - strand, within EX31_RS02775 at 25.656 kb on + strand at 25.728 kb on - strand at 25.901 kb on - strand, within EX31_RS02780 at 25.993 kb on - strand, within EX31_RS02780 at 26.264 kb on - strand, within EX31_RS02780 at 26.264 kb on - strand, within EX31_RS02780 at 26.377 kb on + strand, within EX31_RS02780 at 26.378 kb on - strand, within EX31_RS02780 at 26.557 kb on + strand, within EX31_RS02780 at 26.654 kb on + strand, within EX31_RS02780 at 26.654 kb on + strand, within EX31_RS02780 at 26.657 kb on - strand, within EX31_RS02780
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 23,490 + -2.4 23,490 + +0.4 23,490 + -1.2 23,490 + -0.5 23,491 - +0.3 23,543 + EX31_RS02770 0.14 -0.8 23,561 + EX31_RS02770 0.16 +1.4 23,619 - EX31_RS02770 0.21 -2.9 23,680 - EX31_RS02770 0.27 +1.2 23,685 + EX31_RS02770 0.27 -1.4 23,718 - EX31_RS02770 0.30 -0.1 23,718 - EX31_RS02770 0.30 +0.0 23,758 - EX31_RS02770 0.34 -0.8 23,827 - EX31_RS02770 0.40 -0.1 23,827 - EX31_RS02770 0.40 +0.5 23,827 - EX31_RS02770 0.40 -0.1 23,884 - EX31_RS02770 0.46 -0.8 23,961 - EX31_RS02770 0.53 +0.1 23,973 - EX31_RS02770 0.54 +0.8 23,973 - EX31_RS02770 0.54 -0.4 23,999 + EX31_RS02770 0.56 +1.2 24,000 - EX31_RS02770 0.56 +0.0 24,000 - EX31_RS02770 0.56 +0.6 24,027 + EX31_RS02770 0.59 -1.6 24,179 - EX31_RS02770 0.73 -0.2 24,227 - EX31_RS02770 0.77 -1.3 24,492 - +0.3 24,492 - +0.2 24,500 - -0.7 24,539 - -1.2 24,694 + EX31_RS02775 0.19 -1.5 24,745 + EX31_RS02775 0.23 -1.3 24,747 - EX31_RS02775 0.23 +0.4 24,797 + EX31_RS02775 0.28 -1.3 24,797 + EX31_RS02775 0.28 +0.1 24,797 + EX31_RS02775 0.28 -0.5 24,798 - EX31_RS02775 0.28 -0.2 24,828 + EX31_RS02775 0.30 -0.6 25,421 + EX31_RS02775 0.79 -1.1 25,479 - EX31_RS02775 0.83 +0.1 25,656 + -1.3 25,728 - -0.5 25,901 - EX31_RS02780 0.17 -0.1 25,993 - EX31_RS02780 0.25 -1.2 26,264 - EX31_RS02780 0.47 -0.2 26,264 - EX31_RS02780 0.47 -1.1 26,377 + EX31_RS02780 0.56 +0.4 26,378 - EX31_RS02780 0.56 -1.5 26,557 + EX31_RS02780 0.71 +0.4 26,654 + EX31_RS02780 0.79 +0.8 26,654 + EX31_RS02780 0.79 -1.0 26,657 - EX31_RS02780 0.79 -2.7
Or see this region's nucleotide sequence