Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02535 and EX31_RS02540 are separated by 430 nucleotides EX31_RS02540 and EX31_RS02545 are separated by 3 nucleotides EX31_RS02545 and EX31_RS02550 overlap by 11 nucleotides
EX31_RS02535: EX31_RS02535 - HlyD family efflux transporter periplasmic adaptor subunit, at 538,396 to 539,646
_RS02535
EX31_RS02540: EX31_RS02540 - helix-turn-helix transcriptional regulator, at 540,077 to 540,622
_RS02540
EX31_RS02545: EX31_RS02545 - alpha/beta hydrolase, at 540,626 to 541,681
_RS02545
EX31_RS02550: EX31_RS02550 - MATE family efflux transporter, at 541,671 to 543,023
_RS02550
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1
2 at 539.639 kb on - strand at 539.639 kb on - strand at 539.639 kb on - strand at 539.896 kb on - strand at 539.927 kb on - strand at 540.055 kb on + strand at 540.056 kb on - strand at 540.060 kb on - strand at 540.077 kb on - strand at 540.160 kb on + strand, within EX31_RS02540 at 540.161 kb on - strand, within EX31_RS02540 at 540.164 kb on + strand, within EX31_RS02540 at 540.214 kb on + strand, within EX31_RS02540 at 540.220 kb on + strand, within EX31_RS02540 at 540.416 kb on + strand, within EX31_RS02540 at 540.417 kb on - strand, within EX31_RS02540 at 540.548 kb on + strand, within EX31_RS02540 at 540.736 kb on + strand, within EX31_RS02545 at 540.761 kb on + strand, within EX31_RS02545 at 540.940 kb on - strand, within EX31_RS02545 at 540.991 kb on + strand, within EX31_RS02545 at 541.207 kb on + strand, within EX31_RS02545 at 541.208 kb on - strand, within EX31_RS02545 at 541.208 kb on - strand, within EX31_RS02545 at 541.283 kb on + strand, within EX31_RS02545 at 541.284 kb on - strand, within EX31_RS02545 at 541.284 kb on - strand, within EX31_RS02545 at 541.284 kb on - strand, within EX31_RS02545 at 541.286 kb on - strand, within EX31_RS02545 at 541.429 kb on + strand, within EX31_RS02545 at 541.470 kb on + strand, within EX31_RS02545 at 541.471 kb on - strand, within EX31_RS02545 at 541.471 kb on - strand, within EX31_RS02545 at 541.509 kb on + strand, within EX31_RS02545 at 541.510 kb on - strand, within EX31_RS02545 at 541.565 kb on + strand, within EX31_RS02545 at 541.566 kb on - strand, within EX31_RS02545 at 541.566 kb on - strand, within EX31_RS02545 at 541.793 kb on + strand at 541.968 kb on + strand, within EX31_RS02550 at 541.968 kb on + strand, within EX31_RS02550 at 542.038 kb on + strand, within EX31_RS02550 at 542.042 kb on + strand, within EX31_RS02550 at 542.042 kb on + strand, within EX31_RS02550 at 542.042 kb on + strand, within EX31_RS02550 at 542.051 kb on + strand, within EX31_RS02550 at 542.124 kb on + strand, within EX31_RS02550 at 542.206 kb on + strand, within EX31_RS02550 at 542.206 kb on + strand, within EX31_RS02550 at 542.206 kb on + strand, within EX31_RS02550 at 542.423 kb on + strand, within EX31_RS02550 at 542.494 kb on + strand, within EX31_RS02550 at 542.494 kb on + strand, within EX31_RS02550 at 542.494 kb on + strand, within EX31_RS02550 at 542.494 kb on + strand, within EX31_RS02550 at 542.494 kb on + strand, within EX31_RS02550 at 542.494 kb on + strand, within EX31_RS02550 at 542.517 kb on + strand, within EX31_RS02550 at 542.552 kb on + strand, within EX31_RS02550
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 539,639 - +0.6 539,639 - +0.4 539,639 - -0.4 539,896 - -0.3 539,927 - -0.3 540,055 + -0.1 540,056 - -0.6 540,060 - +0.4 540,077 - +0.5 540,160 + EX31_RS02540 0.15 +0.0 540,161 - EX31_RS02540 0.15 -0.6 540,164 + EX31_RS02540 0.16 -1.0 540,214 + EX31_RS02540 0.25 +0.2 540,220 + EX31_RS02540 0.26 +0.4 540,416 + EX31_RS02540 0.62 +0.9 540,417 - EX31_RS02540 0.62 +0.5 540,548 + EX31_RS02540 0.86 +1.2 540,736 + EX31_RS02545 0.10 -0.5 540,761 + EX31_RS02545 0.13 -0.3 540,940 - EX31_RS02545 0.30 -1.5 540,991 + EX31_RS02545 0.35 -1.9 541,207 + EX31_RS02545 0.55 -0.5 541,208 - EX31_RS02545 0.55 +0.3 541,208 - EX31_RS02545 0.55 -1.1 541,283 + EX31_RS02545 0.62 -1.3 541,284 - EX31_RS02545 0.62 -0.3 541,284 - EX31_RS02545 0.62 +0.1 541,284 - EX31_RS02545 0.62 -0.2 541,286 - EX31_RS02545 0.62 -0.6 541,429 + EX31_RS02545 0.76 -0.2 541,470 + EX31_RS02545 0.80 -0.9 541,471 - EX31_RS02545 0.80 -1.1 541,471 - EX31_RS02545 0.80 +0.9 541,509 + EX31_RS02545 0.84 +0.8 541,510 - EX31_RS02545 0.84 -1.7 541,565 + EX31_RS02545 0.89 -0.6 541,566 - EX31_RS02545 0.89 -1.4 541,566 - EX31_RS02545 0.89 -0.3 541,793 + +0.1 541,968 + EX31_RS02550 0.22 -0.2 541,968 + EX31_RS02550 0.22 +0.4 542,038 + EX31_RS02550 0.27 +0.1 542,042 + EX31_RS02550 0.27 -0.4 542,042 + EX31_RS02550 0.27 -0.2 542,042 + EX31_RS02550 0.27 +0.2 542,051 + EX31_RS02550 0.28 -0.9 542,124 + EX31_RS02550 0.33 -0.1 542,206 + EX31_RS02550 0.40 -0.0 542,206 + EX31_RS02550 0.40 -0.4 542,206 + EX31_RS02550 0.40 +0.0 542,423 + EX31_RS02550 0.56 -1.1 542,494 + EX31_RS02550 0.61 -0.3 542,494 + EX31_RS02550 0.61 +0.8 542,494 + EX31_RS02550 0.61 +0.5 542,494 + EX31_RS02550 0.61 +2.1 542,494 + EX31_RS02550 0.61 +0.8 542,494 + EX31_RS02550 0.61 -0.3 542,517 + EX31_RS02550 0.63 +0.2 542,552 + EX31_RS02550 0.65 +0.2
Or see this region's nucleotide sequence