Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02195 and EX31_RS02200 are separated by 207 nucleotides EX31_RS02200 and EX31_RS02205 overlap by 4 nucleotides EX31_RS02205 and EX31_RS02215 are separated by 579 nucleotides
EX31_RS02195: EX31_RS02195 - MarR family transcriptional regulator, at 478,639 to 479,058
_RS02195
EX31_RS02200: EX31_RS02200 - Hcp family type VI secretion system effector, at 479,266 to 479,748
_RS02200
EX31_RS02205: EX31_RS02205 - DUF2778 domain-containing protein, at 479,745 to 480,221
_RS02205
EX31_RS02215: EX31_RS02215 - isopentenyl-diphosphate Delta-isomerase, at 480,801 to 481,334
_RS02215
Position (kb) 479
480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 478.893 kb on + strand, within EX31_RS02195 at 478.893 kb on + strand, within EX31_RS02195 at 478.908 kb on + strand, within EX31_RS02195 at 478.911 kb on + strand, within EX31_RS02195 at 478.911 kb on + strand, within EX31_RS02195 at 478.912 kb on - strand, within EX31_RS02195 at 478.970 kb on + strand, within EX31_RS02195 at 478.970 kb on + strand, within EX31_RS02195 at 478.970 kb on + strand, within EX31_RS02195 at 478.971 kb on - strand, within EX31_RS02195 at 479.037 kb on + strand at 479.038 kb on - strand at 479.056 kb on + strand at 479.057 kb on - strand at 479.067 kb on + strand at 479.203 kb on + strand at 479.234 kb on + strand at 479.234 kb on + strand at 479.234 kb on + strand at 479.234 kb on + strand at 479.234 kb on + strand at 479.235 kb on - strand at 479.235 kb on - strand at 479.236 kb on + strand at 479.237 kb on - strand at 479.282 kb on - strand at 479.285 kb on + strand at 479.387 kb on + strand, within EX31_RS02200 at 479.391 kb on + strand, within EX31_RS02200 at 479.391 kb on + strand, within EX31_RS02200 at 479.429 kb on + strand, within EX31_RS02200 at 479.430 kb on - strand, within EX31_RS02200 at 479.482 kb on + strand, within EX31_RS02200 at 479.482 kb on + strand, within EX31_RS02200 at 479.483 kb on - strand, within EX31_RS02200 at 479.525 kb on + strand, within EX31_RS02200 at 479.525 kb on + strand, within EX31_RS02200 at 479.525 kb on + strand, within EX31_RS02200 at 479.526 kb on - strand, within EX31_RS02200 at 479.526 kb on - strand, within EX31_RS02200 at 479.567 kb on - strand, within EX31_RS02200 at 479.575 kb on - strand, within EX31_RS02200 at 479.575 kb on - strand, within EX31_RS02200 at 479.592 kb on - strand, within EX31_RS02200 at 479.646 kb on + strand, within EX31_RS02200 at 479.652 kb on + strand, within EX31_RS02200 at 479.653 kb on - strand, within EX31_RS02200 at 479.716 kb on - strand at 479.767 kb on + strand at 479.780 kb on + strand at 479.782 kb on + strand at 479.782 kb on + strand at 479.782 kb on + strand at 479.783 kb on - strand at 479.791 kb on + strand at 479.791 kb on + strand at 479.792 kb on - strand at 479.792 kb on - strand at 479.901 kb on + strand, within EX31_RS02205 at 479.901 kb on + strand, within EX31_RS02205 at 479.904 kb on + strand, within EX31_RS02205 at 479.904 kb on + strand, within EX31_RS02205 at 479.904 kb on + strand, within EX31_RS02205 at 479.904 kb on + strand, within EX31_RS02205 at 479.904 kb on + strand, within EX31_RS02205 at 479.905 kb on - strand, within EX31_RS02205 at 479.905 kb on - strand, within EX31_RS02205 at 479.905 kb on - strand, within EX31_RS02205 at 479.905 kb on - strand, within EX31_RS02205 at 479.905 kb on - strand, within EX31_RS02205 at 479.937 kb on + strand, within EX31_RS02205 at 479.938 kb on - strand, within EX31_RS02205 at 479.957 kb on + strand, within EX31_RS02205 at 479.957 kb on + strand, within EX31_RS02205 at 480.014 kb on + strand, within EX31_RS02205 at 480.014 kb on + strand, within EX31_RS02205 at 480.015 kb on - strand, within EX31_RS02205 at 480.117 kb on - strand, within EX31_RS02205 at 480.122 kb on + strand, within EX31_RS02205 at 480.122 kb on + strand, within EX31_RS02205 at 480.154 kb on + strand, within EX31_RS02205 at 480.155 kb on - strand, within EX31_RS02205 at 480.155 kb on - strand, within EX31_RS02205 at 480.216 kb on + strand at 480.216 kb on + strand at 480.219 kb on + strand at 480.236 kb on + strand at 480.236 kb on + strand at 480.236 kb on + strand at 480.236 kb on + strand at 480.236 kb on + strand at 480.237 kb on - strand at 480.237 kb on - strand at 480.237 kb on - strand at 480.238 kb on + strand at 480.238 kb on + strand at 480.238 kb on + strand at 480.238 kb on + strand at 480.238 kb on + strand at 480.238 kb on + strand at 480.239 kb on - strand at 480.276 kb on + strand at 480.280 kb on - strand at 480.280 kb on - strand at 480.280 kb on - strand at 480.280 kb on - strand at 480.280 kb on - strand at 480.300 kb on + strand at 480.300 kb on + strand at 480.300 kb on + strand at 480.351 kb on + strand at 480.351 kb on + strand at 480.379 kb on + strand at 480.461 kb on + strand at 480.492 kb on - strand at 480.498 kb on + strand at 480.498 kb on + strand at 480.543 kb on + strand at 480.543 kb on + strand at 480.543 kb on + strand at 480.544 kb on - strand at 480.544 kb on - strand at 480.545 kb on + strand at 480.545 kb on + strand at 480.545 kb on + strand at 480.545 kb on + strand at 480.545 kb on + strand at 480.545 kb on + strand at 480.546 kb on - strand at 480.553 kb on + strand at 480.553 kb on + strand at 480.556 kb on - strand at 480.570 kb on + strand at 480.570 kb on + strand at 480.596 kb on - strand at 480.596 kb on - strand at 480.626 kb on + strand at 480.642 kb on + strand at 480.642 kb on + strand at 480.643 kb on - strand at 480.664 kb on + strand at 480.665 kb on - strand at 480.765 kb on + strand at 480.765 kb on + strand at 480.765 kb on + strand at 480.765 kb on + strand at 480.766 kb on - strand at 480.766 kb on - strand at 480.766 kb on - strand at 480.774 kb on + strand at 480.774 kb on + strand at 480.775 kb on - strand at 480.800 kb on + strand at 480.820 kb on + strand at 480.820 kb on + strand at 480.821 kb on - strand at 480.889 kb on + strand, within EX31_RS02215 at 480.889 kb on + strand, within EX31_RS02215 at 480.889 kb on + strand, within EX31_RS02215 at 480.890 kb on - strand, within EX31_RS02215 at 480.890 kb on - strand, within EX31_RS02215 at 480.890 kb on - strand, within EX31_RS02215 at 480.890 kb on - strand, within EX31_RS02215 at 480.890 kb on - strand, within EX31_RS02215 at 480.909 kb on + strand, within EX31_RS02215 at 480.910 kb on - strand, within EX31_RS02215 at 480.910 kb on - strand, within EX31_RS02215 at 480.911 kb on + strand, within EX31_RS02215 at 480.911 kb on + strand, within EX31_RS02215 at 480.912 kb on - strand, within EX31_RS02215 at 480.912 kb on - strand, within EX31_RS02215
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 478,893 + EX31_RS02195 0.60 -1.7 478,893 + EX31_RS02195 0.60 -0.2 478,908 + EX31_RS02195 0.64 -0.7 478,911 + EX31_RS02195 0.65 -0.9 478,911 + EX31_RS02195 0.65 +0.8 478,912 - EX31_RS02195 0.65 -0.2 478,970 + EX31_RS02195 0.79 +0.5 478,970 + EX31_RS02195 0.79 +0.4 478,970 + EX31_RS02195 0.79 -0.0 478,971 - EX31_RS02195 0.79 -0.7 479,037 + -0.9 479,038 - -1.3 479,056 + +1.2 479,057 - +1.5 479,067 + -0.1 479,203 + +2.4 479,234 + +1.0 479,234 + +1.0 479,234 + +0.3 479,234 + -0.6 479,234 + +0.7 479,235 - -1.4 479,235 - -0.7 479,236 + +0.9 479,237 - +1.1 479,282 - -0.7 479,285 + -0.0 479,387 + EX31_RS02200 0.25 -2.1 479,391 + EX31_RS02200 0.26 -0.2 479,391 + EX31_RS02200 0.26 -0.1 479,429 + EX31_RS02200 0.34 -0.6 479,430 - EX31_RS02200 0.34 -0.3 479,482 + EX31_RS02200 0.45 -0.1 479,482 + EX31_RS02200 0.45 -1.4 479,483 - EX31_RS02200 0.45 +0.3 479,525 + EX31_RS02200 0.54 -0.3 479,525 + EX31_RS02200 0.54 -1.6 479,525 + EX31_RS02200 0.54 +0.1 479,526 - EX31_RS02200 0.54 -0.0 479,526 - EX31_RS02200 0.54 -1.6 479,567 - EX31_RS02200 0.62 -3.1 479,575 - EX31_RS02200 0.64 -0.3 479,575 - EX31_RS02200 0.64 -0.5 479,592 - EX31_RS02200 0.67 -1.3 479,646 + EX31_RS02200 0.79 -1.6 479,652 + EX31_RS02200 0.80 +0.2 479,653 - EX31_RS02200 0.80 +0.0 479,716 - +0.4 479,767 + -0.5 479,780 + -0.7 479,782 + -0.5 479,782 + -1.4 479,782 + +0.8 479,783 - -0.3 479,791 + +0.2 479,791 + -0.6 479,792 - -1.2 479,792 - -1.4 479,901 + EX31_RS02205 0.33 -0.3 479,901 + EX31_RS02205 0.33 +0.8 479,904 + EX31_RS02205 0.33 -0.5 479,904 + EX31_RS02205 0.33 -0.4 479,904 + EX31_RS02205 0.33 -0.1 479,904 + EX31_RS02205 0.33 -0.4 479,904 + EX31_RS02205 0.33 -0.6 479,905 - EX31_RS02205 0.34 +1.2 479,905 - EX31_RS02205 0.34 -1.6 479,905 - EX31_RS02205 0.34 +0.8 479,905 - EX31_RS02205 0.34 -1.2 479,905 - EX31_RS02205 0.34 -1.1 479,937 + EX31_RS02205 0.40 +1.4 479,938 - EX31_RS02205 0.40 -1.4 479,957 + EX31_RS02205 0.44 -0.7 479,957 + EX31_RS02205 0.44 -0.5 480,014 + EX31_RS02205 0.56 -0.9 480,014 + EX31_RS02205 0.56 -0.9 480,015 - EX31_RS02205 0.57 +0.6 480,117 - EX31_RS02205 0.78 -0.3 480,122 + EX31_RS02205 0.79 +0.4 480,122 + EX31_RS02205 0.79 -0.8 480,154 + EX31_RS02205 0.86 -1.2 480,155 - EX31_RS02205 0.86 -0.6 480,155 - EX31_RS02205 0.86 -1.2 480,216 + -0.0 480,216 + -0.7 480,219 + +0.0 480,236 + +1.1 480,236 + -2.2 480,236 + +0.2 480,236 + -0.6 480,236 + +1.0 480,237 - +0.9 480,237 - -0.3 480,237 - -0.8 480,238 + +0.9 480,238 + +1.0 480,238 + +0.9 480,238 + -0.9 480,238 + -0.5 480,238 + -0.1 480,239 - +1.3 480,276 + +0.2 480,280 - -0.9 480,280 - -1.4 480,280 - +0.2 480,280 - +0.4 480,280 - +0.7 480,300 + +0.1 480,300 + +0.6 480,300 + +0.1 480,351 + +0.6 480,351 + +2.6 480,379 + -0.4 480,461 + +0.3 480,492 - -0.3 480,498 + -0.4 480,498 + +0.4 480,543 + +0.5 480,543 + +0.6 480,543 + +0.5 480,544 - -0.3 480,544 - -0.6 480,545 + -0.8 480,545 + +0.4 480,545 + -0.5 480,545 + +0.2 480,545 + +0.9 480,545 + -0.4 480,546 - -0.7 480,553 + -0.2 480,553 + -0.2 480,556 - -0.3 480,570 + +0.6 480,570 + -2.2 480,596 - -2.0 480,596 - -0.9 480,626 + -0.9 480,642 + -0.0 480,642 + -0.1 480,643 - +0.6 480,664 + +0.3 480,665 - +0.4 480,765 + +0.8 480,765 + -0.4 480,765 + +0.4 480,765 + -0.2 480,766 - -0.3 480,766 - -0.8 480,766 - -0.6 480,774 + -0.2 480,774 + +1.0 480,775 - +0.2 480,800 + +0.0 480,820 + +0.9 480,820 + +0.2 480,821 - -2.2 480,889 + EX31_RS02215 0.16 +1.0 480,889 + EX31_RS02215 0.16 +0.2 480,889 + EX31_RS02215 0.16 +0.7 480,890 - EX31_RS02215 0.17 +1.2 480,890 - EX31_RS02215 0.17 -0.1 480,890 - EX31_RS02215 0.17 +0.2 480,890 - EX31_RS02215 0.17 +0.2 480,890 - EX31_RS02215 0.17 +1.1 480,909 + EX31_RS02215 0.20 -1.1 480,910 - EX31_RS02215 0.20 +0.9 480,910 - EX31_RS02215 0.20 -0.3 480,911 + EX31_RS02215 0.21 -1.2 480,911 + EX31_RS02215 0.21 -0.8 480,912 - EX31_RS02215 0.21 -0.8 480,912 - EX31_RS02215 0.21 -1.1
Or see this region's nucleotide sequence