Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00085 and EX31_RS00090 are separated by 251 nucleotides
EX31_RS00085: EX31_RS00085 - ABC transporter ATP-binding protein, at 17,416 to 18,501
_RS00085
EX31_RS00090: EX31_RS00090 - PLP-dependent aminotransferase family protein, at 18,753 to 20,309
_RS00090
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 16.615 kb on - strand at 16.774 kb on + strand at 16.775 kb on - strand at 16.818 kb on - strand at 16.821 kb on + strand at 16.897 kb on + strand at 16.954 kb on - strand at 16.983 kb on + strand at 17.049 kb on + strand at 17.049 kb on + strand at 17.111 kb on + strand at 17.112 kb on - strand at 17.194 kb on + strand at 17.290 kb on + strand at 17.293 kb on - strand at 17.396 kb on - strand at 17.563 kb on + strand, within EX31_RS00085 at 17.563 kb on + strand, within EX31_RS00085 at 17.563 kb on + strand, within EX31_RS00085 at 17.563 kb on + strand, within EX31_RS00085 at 17.564 kb on - strand, within EX31_RS00085 at 17.564 kb on - strand, within EX31_RS00085 at 17.564 kb on - strand, within EX31_RS00085 at 17.564 kb on - strand, within EX31_RS00085 at 17.635 kb on + strand, within EX31_RS00085 at 17.636 kb on - strand, within EX31_RS00085 at 17.636 kb on - strand, within EX31_RS00085 at 17.745 kb on - strand, within EX31_RS00085 at 17.818 kb on - strand, within EX31_RS00085 at 17.831 kb on + strand, within EX31_RS00085 at 17.832 kb on - strand, within EX31_RS00085 at 17.930 kb on + strand, within EX31_RS00085 at 17.931 kb on - strand, within EX31_RS00085 at 17.931 kb on - strand, within EX31_RS00085 at 17.931 kb on - strand, within EX31_RS00085 at 17.931 kb on - strand, within EX31_RS00085 at 17.983 kb on - strand, within EX31_RS00085 at 17.983 kb on - strand, within EX31_RS00085 at 17.983 kb on - strand, within EX31_RS00085 at 17.983 kb on - strand, within EX31_RS00085 at 18.040 kb on - strand, within EX31_RS00085 at 18.128 kb on - strand, within EX31_RS00085 at 18.177 kb on + strand, within EX31_RS00085 at 18.178 kb on - strand, within EX31_RS00085 at 18.245 kb on + strand, within EX31_RS00085 at 18.245 kb on + strand, within EX31_RS00085 at 18.267 kb on + strand, within EX31_RS00085 at 18.313 kb on + strand, within EX31_RS00085 at 18.314 kb on - strand, within EX31_RS00085 at 18.462 kb on - strand at 18.462 kb on - strand at 18.491 kb on + strand at 18.491 kb on + strand at 18.491 kb on + strand at 18.491 kb on + strand at 18.491 kb on + strand at 18.491 kb on + strand at 18.491 kb on + strand at 18.491 kb on + strand at 18.491 kb on + strand at 18.565 kb on + strand at 18.794 kb on + strand at 18.938 kb on - strand, within EX31_RS00090 at 18.938 kb on - strand, within EX31_RS00090 at 18.941 kb on - strand, within EX31_RS00090 at 18.941 kb on - strand, within EX31_RS00090 at 19.089 kb on - strand, within EX31_RS00090 at 19.106 kb on + strand, within EX31_RS00090 at 19.106 kb on + strand, within EX31_RS00090 at 19.106 kb on + strand, within EX31_RS00090 at 19.107 kb on - strand, within EX31_RS00090 at 19.107 kb on - strand, within EX31_RS00090 at 19.107 kb on - strand, within EX31_RS00090 at 19.107 kb on - strand, within EX31_RS00090 at 19.184 kb on + strand, within EX31_RS00090 at 19.184 kb on + strand, within EX31_RS00090 at 19.184 kb on + strand, within EX31_RS00090 at 19.184 kb on + strand, within EX31_RS00090 at 19.184 kb on + strand, within EX31_RS00090 at 19.185 kb on - strand, within EX31_RS00090 at 19.213 kb on + strand, within EX31_RS00090 at 19.214 kb on - strand, within EX31_RS00090 at 19.270 kb on + strand, within EX31_RS00090 at 19.270 kb on + strand, within EX31_RS00090 at 19.271 kb on - strand, within EX31_RS00090 at 19.291 kb on + strand, within EX31_RS00090 at 19.302 kb on - strand, within EX31_RS00090 at 19.310 kb on + strand, within EX31_RS00090 at 19.319 kb on - strand, within EX31_RS00090 at 19.319 kb on - strand, within EX31_RS00090 at 19.415 kb on + strand, within EX31_RS00090 at 19.415 kb on + strand, within EX31_RS00090 at 19.415 kb on + strand, within EX31_RS00090 at 19.416 kb on - strand, within EX31_RS00090 at 19.416 kb on - strand, within EX31_RS00090
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 16,615 - +0.1 16,774 + -1.0 16,775 - -0.5 16,818 - +0.5 16,821 + -0.4 16,897 + +1.2 16,954 - -0.4 16,983 + +0.5 17,049 + -0.7 17,049 + -0.0 17,111 + -0.2 17,112 - +0.3 17,194 + -0.2 17,290 + -3.2 17,293 - -1.0 17,396 - +0.7 17,563 + EX31_RS00085 0.14 -0.2 17,563 + EX31_RS00085 0.14 +0.2 17,563 + EX31_RS00085 0.14 -0.4 17,563 + EX31_RS00085 0.14 -0.6 17,564 - EX31_RS00085 0.14 -0.3 17,564 - EX31_RS00085 0.14 -0.1 17,564 - EX31_RS00085 0.14 -0.1 17,564 - EX31_RS00085 0.14 -0.3 17,635 + EX31_RS00085 0.20 -0.9 17,636 - EX31_RS00085 0.20 -0.5 17,636 - EX31_RS00085 0.20 -0.5 17,745 - EX31_RS00085 0.30 -1.3 17,818 - EX31_RS00085 0.37 -1.4 17,831 + EX31_RS00085 0.38 +0.2 17,832 - EX31_RS00085 0.38 -0.7 17,930 + EX31_RS00085 0.47 +0.7 17,931 - EX31_RS00085 0.47 -0.2 17,931 - EX31_RS00085 0.47 -0.0 17,931 - EX31_RS00085 0.47 -0.7 17,931 - EX31_RS00085 0.47 +0.8 17,983 - EX31_RS00085 0.52 -0.4 17,983 - EX31_RS00085 0.52 -0.1 17,983 - EX31_RS00085 0.52 -1.7 17,983 - EX31_RS00085 0.52 -0.0 18,040 - EX31_RS00085 0.57 -1.9 18,128 - EX31_RS00085 0.66 +0.0 18,177 + EX31_RS00085 0.70 -0.6 18,178 - EX31_RS00085 0.70 -2.3 18,245 + EX31_RS00085 0.76 +0.8 18,245 + EX31_RS00085 0.76 -1.2 18,267 + EX31_RS00085 0.78 -0.4 18,313 + EX31_RS00085 0.83 -0.6 18,314 - EX31_RS00085 0.83 -0.4 18,462 - -3.2 18,462 - -0.6 18,491 + -0.8 18,491 + +0.4 18,491 + -0.9 18,491 + -0.8 18,491 + +0.5 18,491 + +1.6 18,491 + -0.1 18,491 + -0.9 18,491 + -0.0 18,565 + +0.5 18,794 + +0.5 18,938 - EX31_RS00090 0.12 +0.1 18,938 - EX31_RS00090 0.12 +0.6 18,941 - EX31_RS00090 0.12 +0.1 18,941 - EX31_RS00090 0.12 -0.8 19,089 - EX31_RS00090 0.22 -0.1 19,106 + EX31_RS00090 0.23 -1.4 19,106 + EX31_RS00090 0.23 -1.3 19,106 + EX31_RS00090 0.23 +0.0 19,107 - EX31_RS00090 0.23 -0.3 19,107 - EX31_RS00090 0.23 -0.4 19,107 - EX31_RS00090 0.23 -0.4 19,107 - EX31_RS00090 0.23 +0.2 19,184 + EX31_RS00090 0.28 -1.8 19,184 + EX31_RS00090 0.28 -0.3 19,184 + EX31_RS00090 0.28 +0.4 19,184 + EX31_RS00090 0.28 +0.3 19,184 + EX31_RS00090 0.28 +0.9 19,185 - EX31_RS00090 0.28 +1.2 19,213 + EX31_RS00090 0.30 -0.3 19,214 - EX31_RS00090 0.30 +0.5 19,270 + EX31_RS00090 0.33 +0.4 19,270 + EX31_RS00090 0.33 -0.6 19,271 - EX31_RS00090 0.33 -0.7 19,291 + EX31_RS00090 0.35 +0.4 19,302 - EX31_RS00090 0.35 +0.1 19,310 + EX31_RS00090 0.36 +0.5 19,319 - EX31_RS00090 0.36 +0.4 19,319 - EX31_RS00090 0.36 +0.5 19,415 + EX31_RS00090 0.43 +0.6 19,415 + EX31_RS00090 0.43 +0.2 19,415 + EX31_RS00090 0.43 -1.2 19,416 - EX31_RS00090 0.43 +0.4 19,416 - EX31_RS00090 0.43 +0.9
Or see this region's nucleotide sequence