Strain Fitness in Rahnella sp. WP5 around EX31_RS17050

Experiment: NL-CCM; high oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; high oxygen
849	-		EX31_RS26065	0.44	-0.0
849	-		EX31_RS26065	0.44	+0.9
897	+		EX31_RS26065	0.89	-2.1
897	+		EX31_RS26065	0.89	+0.9
897	+		EX31_RS26065	0.89	-0.4
898	-				-2.1
898	-				+0.2
898	-				+0.2
898	-				+0.9
908	+				+0.7
909	-				+0.7
909	-				-0.1
909	-				+0.5
909	-				-1.0
959	+				-1.5
959	+				-0.6
984	+				+0.8
984	+				+1.0
984	+				+0.0
984	+				-0.6
985	-				+0.6
985	-				-0.3
985	-				-0.1
989	+				-0.2
989	+				+0.1
992	+				-1.0
992	+				-1.1
993	-				-0.8
993	-				-1.9
993	-				+0.7
1,005	+				-1.8
1,006	-				+0.0
1,006	-				-0.6
1,006	-				-0.7
1,009	+				+1.5
1,010	-				-0.3
1,018	+				+0.4
1,018	+				-1.2
1,018	+				+0.6
1,018	+				-0.0
1,019	-				+0.2
1,019	-				+0.4
1,019	-				-0.5
1,027	-				-0.9
1,047	+				-0.6
1,070	+		EX31_RS17045	0.17	-0.8
1,097	+		EX31_RS17045	0.25	-0.5
1,098	-		EX31_RS17045	0.26	+0.6
1,104	+		EX31_RS17045	0.28	+0.9
1,104	+		EX31_RS17045	0.28	-0.3
1,104	+		EX31_RS17045	0.28	+0.4
1,104	+		EX31_RS17045	0.28	+1.3
1,105	-		EX31_RS17045	0.28	+0.4
1,105	-		EX31_RS17045	0.28	+0.0
1,105	-		EX31_RS17045	0.28	-0.2
1,105	-		EX31_RS17045	0.28	-0.1
1,234	+		EX31_RS17045	0.69	+0.3
1,234	+		EX31_RS17045	0.69	+0.6
1,234	+		EX31_RS17045	0.69	-0.8
1,234	+		EX31_RS17045	0.69	-0.4
1,234	+		EX31_RS17045	0.69	-0.7
1,234	+		EX31_RS17045	0.69	+0.3
1,235	-		EX31_RS17045	0.69	-0.8
1,235	-		EX31_RS17045	0.69	-0.6
1,235	-		EX31_RS17045	0.69	-0.2
1,235	-		EX31_RS17045	0.69	-1.6
1,235	-		EX31_RS17045	0.69	+1.2
1,235	-		EX31_RS17045	0.69	-0.4
1,235	-		EX31_RS17045	0.69	+1.4
1,235	-		EX31_RS17045	0.69	+0.2
1,235	-		EX31_RS17045	0.69	-0.4
1,235	-		EX31_RS17045	0.69	+0.8
1,235	-		EX31_RS17045	0.69	-0.7
1,266	-		EX31_RS17045	0.79	-2.2
1,317	+				-0.3
1,318	-				-0.8
1,333	-				+1.6
1,333	-				+0.6
1,333	-				+0.4
1,333	-				-0.8
1,358	+				+0.3
1,358	+				+0.7
1,359	-				-0.4
1,359	-				+0.9
1,359	-				-0.2
1,359	-				-0.5
1,359	-				-0.1
1,367	+				-1.7
1,445	-		EX31_RS17050	0.24	-0.6
1,445	-		EX31_RS17050	0.24	+0.4
1,445	-		EX31_RS17050	0.24	-0.1
1,445	-		EX31_RS17050	0.24	+0.0
1,458	+		EX31_RS17050	0.27	+0.7
1,459	-		EX31_RS17050	0.27	-0.2
1,555	+		EX31_RS17050	0.47	+0.3
1,556	-		EX31_RS17050	0.47	-0.1
1,556	-		EX31_RS17050	0.47	-0.7
1,556	-		EX31_RS17050	0.47	-0.5
1,556	-		EX31_RS17050	0.47	-1.5
1,556	-		EX31_RS17050	0.47	+1.6
1,556	-		EX31_RS17050	0.47	+0.7
1,556	-		EX31_RS17050	0.47	+1.0
1,559	+		EX31_RS17050	0.48	+1.1
1,560	-		EX31_RS17050	0.48	-0.2
1,579	+		EX31_RS17050	0.52	+0.3
1,580	-		EX31_RS17050	0.53	-0.5
1,588	-		EX31_RS17050	0.54	-0.8
1,595	-		EX31_RS17050	0.56	-0.9
1,595	-		EX31_RS17050	0.56	+1.0
1,644	-		EX31_RS17050	0.66	+1.8
1,709	+		EX31_RS17050	0.80	-0.4
1,709	+		EX31_RS17050	0.80	+0.2
1,710	-		EX31_RS17050	0.80	+1.3
1,710	-		EX31_RS17050	0.80	+0.4
1,710	-		EX31_RS17050	0.80	+0.1
1,816	+				+0.0
1,816	+				-0.6
1,816	+				+0.2
1,817	-				+1.4
1,817	-				-1.1
1,817	-				+0.2
1,817	-				+0.3
1,817	-				-0.7
1,817	-				+1.1
1,817	-				+0.0
1,817	-				-0.9
1,817	-				+0.9
1,823	+				-0.5
1,824	-				-1.0
1,857	-				+0.4
1,857	-				-1.4
1,857	-				-0.4
1,866	+				+1.4
1,866	+				+0.2
1,866	+				+0.9
1,867	-				+0.8
1,867	-				+0.3
1,907	+		EX31_RS17055	0.13	+1.5
1,907	+		EX31_RS17055	0.13	-1.7
1,907	+		EX31_RS17055	0.13	-0.8
1,907	+		EX31_RS17055	0.13	-1.0
1,907	+		EX31_RS17055	0.13	+0.0
1,908	-		EX31_RS17055	0.13	-0.8
1,908	-		EX31_RS17055	0.13	+0.0
1,908	-		EX31_RS17055	0.13	-0.2
1,925	+		EX31_RS17055	0.15	+0.9
1,925	+		EX31_RS17055	0.15	-1.0
1,925	+		EX31_RS17055	0.15	-0.3
1,925	+		EX31_RS17055	0.15	-1.3
1,925	+		EX31_RS17055	0.15	-1.0
1,926	-		EX31_RS17055	0.15	+0.2
1,926	-		EX31_RS17055	0.15	-0.6
1,926	-		EX31_RS17055	0.15	-0.4
1,928	+		EX31_RS17055	0.16	-0.1
1,928	+		EX31_RS17055	0.16	+0.2
1,928	+		EX31_RS17055	0.16	+0.4
1,928	+		EX31_RS17055	0.16	+0.9
1,928	+		EX31_RS17055	0.16	-0.1
1,929	-		EX31_RS17055	0.16	-0.1
1,929	-		EX31_RS17055	0.16	+0.6
1,929	-		EX31_RS17055	0.16	+0.4
1,929	-		EX31_RS17055	0.16	-2.1
1,929	-		EX31_RS17055	0.16	+1.1
2,019	-		EX31_RS17055	0.28	-0.1
2,051	+		EX31_RS17055	0.33	-1.0
2,051	+		EX31_RS17055	0.33	-1.0
2,051	+		EX31_RS17055	0.33	-1.5
2,051	+		EX31_RS17055	0.33	+0.5
2,051	+		EX31_RS17055	0.33	-0.6
2,051	+		EX31_RS17055	0.33	+0.0
2,051	+		EX31_RS17055	0.33	+0.4
2,051	+		EX31_RS17055	0.33	-0.7
2,051	+		EX31_RS17055	0.33	-1.0
2,051	+		EX31_RS17055	0.33	-0.7
2,051	+		EX31_RS17055	0.33	-0.9
2,051	+		EX31_RS17055	0.33	-0.5
2,051	+		EX31_RS17055	0.33	-0.3
2,051	+		EX31_RS17055	0.33	-0.3
2,051	+		EX31_RS17055	0.33	-0.5
2,052	-		EX31_RS17055	0.33	+0.3
2,052	-		EX31_RS17055	0.33	-0.3
2,052	-		EX31_RS17055	0.33	-1.2
2,052	-		EX31_RS17055	0.33	+2.0
2,052	-		EX31_RS17055	0.33	+1.0
2,052	-		EX31_RS17055	0.33	+0.6
2,052	-		EX31_RS17055	0.33	-0.4
2,052	-		EX31_RS17055	0.33	-0.3
2,052	-		EX31_RS17055	0.33	+0.7
2,052	-		EX31_RS17055	0.33	+0.1
2,055	+		EX31_RS17055	0.33	-0.1
2,055	+		EX31_RS17055	0.33	-0.3
2,055	+		EX31_RS17055	0.33	+0.2
2,055	+		EX31_RS17055	0.33	+0.3
2,056	-		EX31_RS17055	0.33	-0.2
2,056	-		EX31_RS17055	0.33	+1.5
2,056	-		EX31_RS17055	0.33	+1.0
2,056	-		EX31_RS17055	0.33	-0.7
2,056	-		EX31_RS17055	0.33	-1.8
2,056	-		EX31_RS17055	0.33	+1.5
2,168	-		EX31_RS17055	0.49	+0.6
2,168	-		EX31_RS17055	0.49	+0.4
2,168	-		EX31_RS17055	0.49	-0.2
2,168	-		EX31_RS17055	0.49	-0.6
2,186	+		EX31_RS17055	0.52	-0.2
2,187	-		EX31_RS17055	0.52	+0.2
2,187	-		EX31_RS17055	0.52	-0.5
2,187	-		EX31_RS17055	0.52	+0.2
2,246	+		EX31_RS17055	0.60	-1.3
2,246	+		EX31_RS17055	0.60	+0.4
2,310	+		EX31_RS17055	0.69	-1.1
2,310	+		EX31_RS17055	0.69	-0.3
2,310	+		EX31_RS17055	0.69	+0.4
2,311	-		EX31_RS17055	0.69	-0.2
2,311	-		EX31_RS17055	0.69	+0.2
2,311	-		EX31_RS17055	0.69	+0.6
2,311	-		EX31_RS17055	0.69	+0.0
2,311	-		EX31_RS17055	0.69	-0.2
2,311	-		EX31_RS17055	0.69	+0.3
2,348	+		EX31_RS17055	0.74	-0.4
2,348	+		EX31_RS17055	0.74	-0.6
2,388	-		EX31_RS17055	0.80	-0.4
2,411	+		EX31_RS17055	0.83	+0.9
2,411	+		EX31_RS17055	0.83	+0.8
2,420	+		EX31_RS17055	0.84	+0.9
2,420	+		EX31_RS17055	0.84	-1.7
2,420	+		EX31_RS17055	0.84	-0.2
2,421	-		EX31_RS17055	0.84	+0.5
2,421	-		EX31_RS17055	0.84	+1.4
2,421	-		EX31_RS17055	0.84	+0.3
2,421	-		EX31_RS17055	0.84	+0.5
2,421	-		EX31_RS17055	0.84	+0.4
2,421	-		EX31_RS17055	0.84	-0.6
2,421	-		EX31_RS17055	0.84	-2.4
2,421	-		EX31_RS17055	0.84	+0.9
2,537	+				-1.3
2,537	+				-0.8
2,548	+				-0.5
2,548	+				-1.1
2,548	+				+0.8
2,549	-				+0.2
2,549	-				-0.3
2,572	+				-1.2
2,572	+				-0.2
2,572	+				-1.0
2,572	+				-0.2
2,573	-				-0.2
2,573	-				+0.2
2,573	-				+0.2
2,573	-				+0.8
2,573	-				+0.1
2,573	-				+0.8
2,573	-				+0.4
2,580	-				+0.1
2,683	-		EX31_RS17060	0.13	+0.1
2,779	-		EX31_RS17060	0.22	-0.7
2,779	-		EX31_RS17060	0.22	+0.5