Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07110 and EX31_RS07115 overlap by 8 nucleotides EX31_RS07115 and EX31_RS07120 are separated by 187 nucleotides EX31_RS07120 and EX31_RS07125 are separated by 200 nucleotides
EX31_RS07110: EX31_RS07110 - sulfurtransferase, at 213,611 to 215,230
_RS07110
EX31_RS07115: EX31_RS07115 - cysteine dioxygenase, at 215,223 to 215,828
_RS07115
EX31_RS07120: EX31_RS07120 - LysR family transcriptional regulator, at 216,016 to 216,909
_RS07120
EX31_RS07125: EX31_RS07125 - LLM class flavin-dependent oxidoreductase, at 217,110 to 218,207
_RS07125
Position (kb) 216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 215.023 kb on - strand, within EX31_RS07110 at 215.029 kb on + strand, within EX31_RS07110 at 215.029 kb on + strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.030 kb on - strand, within EX31_RS07110 at 215.080 kb on + strand at 215.105 kb on + strand at 215.106 kb on - strand at 215.106 kb on - strand at 215.537 kb on + strand, within EX31_RS07115 at 215.538 kb on - strand, within EX31_RS07115 at 215.541 kb on + strand, within EX31_RS07115 at 215.541 kb on + strand, within EX31_RS07115 at 215.542 kb on - strand, within EX31_RS07115 at 215.644 kb on + strand, within EX31_RS07115 at 215.840 kb on + strand at 215.841 kb on - strand at 215.897 kb on + strand at 215.908 kb on + strand at 215.908 kb on + strand at 215.991 kb on - strand at 216.011 kb on + strand at 216.011 kb on + strand at 216.012 kb on - strand at 216.012 kb on - strand at 216.225 kb on + strand, within EX31_RS07120 at 216.225 kb on + strand, within EX31_RS07120 at 216.225 kb on + strand, within EX31_RS07120 at 216.226 kb on - strand, within EX31_RS07120 at 216.408 kb on - strand, within EX31_RS07120 at 216.689 kb on + strand, within EX31_RS07120 at 216.689 kb on + strand, within EX31_RS07120 at 216.690 kb on - strand, within EX31_RS07120 at 216.827 kb on - strand at 216.907 kb on + strand at 217.046 kb on - strand at 217.053 kb on + strand at 217.054 kb on - strand at 217.054 kb on - strand at 217.110 kb on - strand at 217.124 kb on + strand at 217.125 kb on - strand at 217.131 kb on - strand at 217.421 kb on + strand, within EX31_RS07125 at 217.422 kb on - strand, within EX31_RS07125 at 217.467 kb on + strand, within EX31_RS07125 at 217.467 kb on + strand, within EX31_RS07125 at 217.467 kb on + strand, within EX31_RS07125 at 217.467 kb on + strand, within EX31_RS07125 at 217.468 kb on - strand, within EX31_RS07125 at 217.506 kb on + strand, within EX31_RS07125 at 217.506 kb on + strand, within EX31_RS07125 at 217.507 kb on - strand, within EX31_RS07125 at 217.507 kb on - strand, within EX31_RS07125 at 217.769 kb on + strand, within EX31_RS07125
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 215,023 - EX31_RS07110 0.87 -1.0 215,029 + EX31_RS07110 0.88 +0.0 215,029 + EX31_RS07110 0.88 -0.2 215,030 - EX31_RS07110 0.88 +0.8 215,030 - EX31_RS07110 0.88 +0.0 215,030 - EX31_RS07110 0.88 -0.2 215,030 - EX31_RS07110 0.88 -1.4 215,030 - EX31_RS07110 0.88 -0.3 215,030 - EX31_RS07110 0.88 -0.4 215,080 + -1.0 215,105 + +1.5 215,106 - -0.6 215,106 - -1.0 215,537 + EX31_RS07115 0.52 -0.5 215,538 - EX31_RS07115 0.52 -1.3 215,541 + EX31_RS07115 0.52 -0.7 215,541 + EX31_RS07115 0.52 +0.2 215,542 - EX31_RS07115 0.53 +0.4 215,644 + EX31_RS07115 0.69 +0.5 215,840 + -0.5 215,841 - -0.4 215,897 + +0.4 215,908 + -1.1 215,908 + -2.8 215,991 - +0.8 216,011 + -0.7 216,011 + -0.9 216,012 - -1.0 216,012 - +1.8 216,225 + EX31_RS07120 0.23 +0.4 216,225 + EX31_RS07120 0.23 +0.9 216,225 + EX31_RS07120 0.23 -0.8 216,226 - EX31_RS07120 0.23 -0.0 216,408 - EX31_RS07120 0.44 -0.3 216,689 + EX31_RS07120 0.75 -0.6 216,689 + EX31_RS07120 0.75 -0.3 216,690 - EX31_RS07120 0.75 -1.5 216,827 - -0.6 216,907 + -0.6 217,046 - +1.4 217,053 + -0.6 217,054 - +0.8 217,054 - -1.2 217,110 - -1.1 217,124 + -1.0 217,125 - -1.5 217,131 - -1.0 217,421 + EX31_RS07125 0.28 -0.2 217,422 - EX31_RS07125 0.28 -2.1 217,467 + EX31_RS07125 0.33 +0.1 217,467 + EX31_RS07125 0.33 -1.3 217,467 + EX31_RS07125 0.33 +0.9 217,467 + EX31_RS07125 0.33 -1.1 217,468 - EX31_RS07125 0.33 -0.2 217,506 + EX31_RS07125 0.36 -0.5 217,506 + EX31_RS07125 0.36 +0.6 217,507 - EX31_RS07125 0.36 +0.2 217,507 - EX31_RS07125 0.36 +0.7 217,769 + EX31_RS07125 0.60 -0.6
Or see this region's nucleotide sequence