Strain Fitness in Rahnella sp. WP5 around EX31_RS06020

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06015 and EX31_RS06020 are separated by 323 nucleotidesEX31_RS06020 and EX31_RS06025 are separated by 91 nucleotidesEX31_RS06025 and EX31_RS06030 are separated by 75 nucleotides EX31_RS06015: EX31_RS06015 - methyl-accepting chemotaxis protein, at 363,125 to 365,020 _RS06015 EX31_RS06020: EX31_RS06020 - hypothetical protein, at 365,344 to 366,069 _RS06020 EX31_RS06025: EX31_RS06025 - NAD(P)H-dependent oxidoreductase, at 366,161 to 366,730 _RS06025 EX31_RS06030: EX31_RS06030 - NCS2 family permease, at 366,806 to 368,143 _RS06030 Position (kb) 365 366 367Strain fitness (log2 ratio) -2 -1 0 1at 364.373 kb on - strand, within EX31_RS06015at 364.374 kb on + strand, within EX31_RS06015at 364.374 kb on + strand, within EX31_RS06015at 364.374 kb on + strand, within EX31_RS06015at 364.374 kb on + strand, within EX31_RS06015at 364.375 kb on - strand, within EX31_RS06015at 364.375 kb on - strand, within EX31_RS06015at 364.375 kb on - strand, within EX31_RS06015at 364.375 kb on - strand, within EX31_RS06015at 364.375 kb on - strand, within EX31_RS06015at 364.375 kb on - strand, within EX31_RS06015at 364.375 kb on - strand, within EX31_RS06015at 364.465 kb on + strand, within EX31_RS06015at 364.465 kb on + strand, within EX31_RS06015at 364.466 kb on - strand, within EX31_RS06015at 364.466 kb on - strand, within EX31_RS06015at 364.466 kb on - strand, within EX31_RS06015at 364.477 kb on - strand, within EX31_RS06015at 364.495 kb on + strand, within EX31_RS06015at 364.495 kb on + strand, within EX31_RS06015at 364.496 kb on - strand, within EX31_RS06015at 364.496 kb on - strand, within EX31_RS06015at 364.496 kb on - strand, within EX31_RS06015at 364.527 kb on + strand, within EX31_RS06015at 364.528 kb on - strand, within EX31_RS06015at 364.579 kb on - strand, within EX31_RS06015at 364.596 kb on + strand, within EX31_RS06015at 364.596 kb on + strand, within EX31_RS06015at 364.596 kb on + strand, within EX31_RS06015at 364.596 kb on + strand, within EX31_RS06015at 364.596 kb on + strand, within EX31_RS06015at 364.597 kb on - strand, within EX31_RS06015at 364.597 kb on - strand, within EX31_RS06015at 364.627 kb on + strand, within EX31_RS06015at 364.627 kb on + strand, within EX31_RS06015at 364.645 kb on + strand, within EX31_RS06015at 364.645 kb on + strand, within EX31_RS06015at 364.645 kb on + strand, within EX31_RS06015at 364.646 kb on - strand, within EX31_RS06015at 364.648 kb on + strand, within EX31_RS06015at 364.648 kb on + strand, within EX31_RS06015at 364.648 kb on + strand, within EX31_RS06015at 364.648 kb on + strand, within EX31_RS06015at 364.648 kb on + strand, within EX31_RS06015at 364.648 kb on + strand, within EX31_RS06015at 364.649 kb on - strand, within EX31_RS06015at 364.649 kb on - strand, within EX31_RS06015at 364.649 kb on - strand, within EX31_RS06015at 364.650 kb on - strand, within EX31_RS06015at 364.651 kb on + strand, within EX31_RS06015at 364.651 kb on + strand, within EX31_RS06015at 364.651 kb on + strand, within EX31_RS06015at 364.652 kb on - strand, within EX31_RS06015at 364.652 kb on - strand, within EX31_RS06015at 364.652 kb on - strand, within EX31_RS06015at 364.655 kb on - strand, within EX31_RS06015at 364.780 kb on + strand, within EX31_RS06015at 364.840 kb on + strandat 364.841 kb on - strandat 364.855 kb on + strandat 364.855 kb on + strandat 364.855 kb on + strandat 364.885 kb on + strandat 364.886 kb on - strandat 364.886 kb on - strandat 364.886 kb on - strandat 364.897 kb on + strandat 364.897 kb on + strandat 364.898 kb on - strandat 364.898 kb on - strandat 364.898 kb on - strandat 364.929 kb on + strandat 364.929 kb on + strandat 364.929 kb on + strandat 364.929 kb on + strandat 364.929 kb on + strandat 364.929 kb on + strandat 364.929 kb on + strandat 364.929 kb on + strandat 364.929 kb on + strandat 364.929 kb on + strandat 364.930 kb on - strandat 364.930 kb on - strandat 364.930 kb on - strandat 364.930 kb on - strandat 364.930 kb on - strandat 364.930 kb on - strandat 364.930 kb on - strandat 365.029 kb on - strandat 365.059 kb on + strandat 365.059 kb on + strandat 365.060 kb on - strandat 365.060 kb on - strandat 365.060 kb on - strandat 365.063 kb on + strandat 365.064 kb on - strandat 365.064 kb on - strandat 365.091 kb on - strandat 365.100 kb on + strandat 365.100 kb on + strandat 365.103 kb on + strandat 365.103 kb on + strandat 365.104 kb on - strandat 365.104 kb on - strandat 365.104 kb on - strandat 365.107 kb on + strandat 365.107 kb on + strandat 365.107 kb on + strandat 365.107 kb on + strandat 365.107 kb on + strandat 365.107 kb on + strandat 365.107 kb on + strandat 365.108 kb on - strandat 365.108 kb on - strandat 365.108 kb on - strandat 365.108 kb on - strandat 365.108 kb on - strandat 365.108 kb on - strandat 365.108 kb on - strandat 365.108 kb on - strandat 365.109 kb on + strandat 365.109 kb on + strandat 365.110 kb on - strandat 365.110 kb on - strandat 365.110 kb on - strandat 365.119 kb on - strandat 365.119 kb on - strandat 365.127 kb on + strandat 365.128 kb on - strandat 365.182 kb on - strandat 365.193 kb on + strandat 365.204 kb on + strandat 365.205 kb on - strandat 365.260 kb on - strandat 365.270 kb on + strandat 365.270 kb on + strandat 365.270 kb on + strandat 365.283 kb on + strandat 365.284 kb on - strandat 365.284 kb on - strandat 365.284 kb on - strandat 365.284 kb on - strandat 365.284 kb on - strandat 365.289 kb on + strandat 365.289 kb on + strandat 365.290 kb on - strandat 365.417 kb on + strand, within EX31_RS06020at 365.417 kb on + strand, within EX31_RS06020at 365.417 kb on + strand, within EX31_RS06020at 365.420 kb on + strand, within EX31_RS06020at 365.420 kb on + strand, within EX31_RS06020at 365.420 kb on + strand, within EX31_RS06020at 365.420 kb on + strand, within EX31_RS06020at 365.421 kb on - strand, within EX31_RS06020at 365.421 kb on - strand, within EX31_RS06020at 365.421 kb on - strand, within EX31_RS06020at 365.421 kb on - strand, within EX31_RS06020at 365.462 kb on + strand, within EX31_RS06020at 365.497 kb on + strand, within EX31_RS06020at 365.498 kb on - strand, within EX31_RS06020at 365.503 kb on + strand, within EX31_RS06020at 365.504 kb on - strand, within EX31_RS06020at 365.594 kb on - strand, within EX31_RS06020at 365.594 kb on - strand, within EX31_RS06020at 365.605 kb on - strand, within EX31_RS06020at 365.605 kb on - strand, within EX31_RS06020at 365.618 kb on + strand, within EX31_RS06020at 365.618 kb on + strand, within EX31_RS06020at 365.699 kb on + strand, within EX31_RS06020at 365.699 kb on + strand, within EX31_RS06020at 365.700 kb on - strand, within EX31_RS06020at 365.700 kb on - strand, within EX31_RS06020at 365.700 kb on - strand, within EX31_RS06020at 365.734 kb on - strand, within EX31_RS06020at 365.734 kb on - strand, within EX31_RS06020at 365.826 kb on + strand, within EX31_RS06020at 365.827 kb on - strand, within EX31_RS06020at 365.866 kb on - strand, within EX31_RS06020at 365.870 kb on + strand, within EX31_RS06020at 365.913 kb on + strand, within EX31_RS06020at 365.913 kb on + strand, within EX31_RS06020at 365.913 kb on + strand, within EX31_RS06020at 365.914 kb on - strand, within EX31_RS06020at 365.914 kb on - strand, within EX31_RS06020at 365.914 kb on - strand, within EX31_RS06020at 365.966 kb on - strand, within EX31_RS06020at 366.067 kb on + strandat 366.111 kb on - strandat 366.116 kb on + strandat 366.117 kb on - strandat 366.146 kb on + strandat 366.147 kb on - strandat 366.156 kb on + strandat 366.156 kb on + strandat 366.156 kb on + strandat 366.156 kb on + strandat 366.157 kb on - strandat 366.157 kb on - strandat 366.218 kb on + strand, within EX31_RS06025at 366.218 kb on + strand, within EX31_RS06025at 366.218 kb on + strand, within EX31_RS06025at 366.219 kb on - strand, within EX31_RS06025at 366.219 kb on - strand, within EX31_RS06025at 366.219 kb on - strand, within EX31_RS06025at 366.219 kb on - strand, within EX31_RS06025at 366.295 kb on + strand, within EX31_RS06025at 366.308 kb on + strand, within EX31_RS06025at 366.308 kb on + strand, within EX31_RS06025at 366.308 kb on + strand, within EX31_RS06025at 366.308 kb on + strand, within EX31_RS06025at 366.308 kb on + strand, within EX31_RS06025at 366.309 kb on - strand, within EX31_RS06025at 366.309 kb on - strand, within EX31_RS06025at 366.319 kb on + strand, within EX31_RS06025at 366.320 kb on - strand, within EX31_RS06025at 366.320 kb on - strand, within EX31_RS06025at 366.411 kb on - strand, within EX31_RS06025at 366.411 kb on - strand, within EX31_RS06025at 366.411 kb on - strand, within EX31_RS06025at 366.412 kb on + strand, within EX31_RS06025at 366.412 kb on + strand, within EX31_RS06025at 366.412 kb on + strand, within EX31_RS06025at 366.412 kb on + strand, within EX31_RS06025at 366.412 kb on + strand, within EX31_RS06025at 366.412 kb on + strand, within EX31_RS06025at 366.413 kb on - strand, within EX31_RS06025at 366.413 kb on - strand, within EX31_RS06025at 366.413 kb on - strand, within EX31_RS06025at 366.413 kb on - strand, within EX31_RS06025at 366.413 kb on - strand, within EX31_RS06025at 366.413 kb on - strand, within EX31_RS06025at 366.413 kb on - strand, within EX31_RS06025at 366.413 kb on - strand, within EX31_RS06025at 366.413 kb on - strand, within EX31_RS06025at 366.413 kb on - strand, within EX31_RS06025at 366.416 kb on + strand, within EX31_RS06025at 366.416 kb on + strand, within EX31_RS06025at 366.416 kb on + strand, within EX31_RS06025at 366.416 kb on + strand, within EX31_RS06025at 366.416 kb on + strand, within EX31_RS06025at 366.416 kb on + strand, within EX31_RS06025at 366.417 kb on - strand, within EX31_RS06025at 366.417 kb on - strand, within EX31_RS06025at 366.417 kb on - strand, within EX31_RS06025at 366.417 kb on - strand, within EX31_RS06025at 366.417 kb on - strand, within EX31_RS06025at 366.417 kb on - strand, within EX31_RS06025at 366.417 kb on - strand, within EX31_RS06025at 366.417 kb on - strand, within EX31_RS06025at 366.545 kb on + strand, within EX31_RS06025at 366.605 kb on - strand, within EX31_RS06025at 366.625 kb on + strand, within EX31_RS06025at 366.707 kb on + strandat 366.707 kb on + strandat 366.708 kb on - strandat 366.708 kb on - strandat 366.708 kb on - strandat 366.708 kb on - strandat 366.709 kb on + strandat 366.709 kb on + strandat 366.710 kb on - strandat 366.710 kb on - strandat 366.710 kb on - strandat 366.729 kb on - strandat 366.729 kb on - strandat 366.912 kb on + strandat 366.912 kb on + strandat 366.912 kb on + strandat 366.912 kb on + strandat 366.913 kb on - strandat 366.913 kb on - strandat 366.913 kb on - strandat 366.913 kb on - strandat 366.913 kb on - strandat 366.913 kb on - strandat 366.934 kb on + strandat 366.934 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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364,373 - EX31_RS06015 0.66 -2.4
364,374 + EX31_RS06015 0.66 -1.0
364,374 + EX31_RS06015 0.66 -0.9
364,374 + EX31_RS06015 0.66 -1.0
364,374 + EX31_RS06015 0.66 -0.8
364,375 - EX31_RS06015 0.66 +0.2
364,375 - EX31_RS06015 0.66 +0.7
364,375 - EX31_RS06015 0.66 -0.0
364,375 - EX31_RS06015 0.66 -0.5
364,375 - EX31_RS06015 0.66 -0.2
364,375 - EX31_RS06015 0.66 +0.1
364,375 - EX31_RS06015 0.66 +0.7
364,465 + EX31_RS06015 0.71 -0.2
364,465 + EX31_RS06015 0.71 +0.1
364,466 - EX31_RS06015 0.71 +0.4
364,466 - EX31_RS06015 0.71 -0.6
364,466 - EX31_RS06015 0.71 +0.7
364,477 - EX31_RS06015 0.71 -0.1
364,495 + EX31_RS06015 0.72 -0.3
364,495 + EX31_RS06015 0.72 -2.0
364,496 - EX31_RS06015 0.72 +0.1
364,496 - EX31_RS06015 0.72 -0.2
364,496 - EX31_RS06015 0.72 -0.9
364,527 + EX31_RS06015 0.74 +0.6
364,528 - EX31_RS06015 0.74 +0.2
364,579 - EX31_RS06015 0.77 -1.7
364,596 + EX31_RS06015 0.78 -0.2
364,596 + EX31_RS06015 0.78 -0.3
364,596 + EX31_RS06015 0.78 -0.3
364,596 + EX31_RS06015 0.78 +0.7
364,596 + EX31_RS06015 0.78 -0.3
364,597 - EX31_RS06015 0.78 +0.3
364,597 - EX31_RS06015 0.78 -0.5
364,627 + EX31_RS06015 0.79 -0.6
364,627 + EX31_RS06015 0.79 +0.1
364,645 + EX31_RS06015 0.80 -0.5
364,645 + EX31_RS06015 0.80 +0.2
364,645 + EX31_RS06015 0.80 +0.5
364,646 - EX31_RS06015 0.80 -0.6
364,648 + EX31_RS06015 0.80 -0.6
364,648 + EX31_RS06015 0.80 +0.5
364,648 + EX31_RS06015 0.80 +0.1
364,648 + EX31_RS06015 0.80 -0.7
364,648 + EX31_RS06015 0.80 -0.2
364,648 + EX31_RS06015 0.80 +0.1
364,649 - EX31_RS06015 0.80 -0.2
364,649 - EX31_RS06015 0.80 -2.1
364,649 - EX31_RS06015 0.80 -1.3
364,650 - EX31_RS06015 0.80 -0.2
364,651 + EX31_RS06015 0.80 -1.8
364,651 + EX31_RS06015 0.80 +1.0
364,651 + EX31_RS06015 0.80 -1.1
364,652 - EX31_RS06015 0.81 +0.2
364,652 - EX31_RS06015 0.81 -0.5
364,652 - EX31_RS06015 0.81 +0.9
364,655 - EX31_RS06015 0.81 -0.1
364,780 + EX31_RS06015 0.87 +0.7
364,840 + -0.1
364,841 - -0.3
364,855 + -0.5
364,855 + +0.1
364,855 + -0.9
364,885 + +0.3
364,886 - +0.3
364,886 - -0.5
364,886 - -0.3
364,897 + -0.2
364,897 + -0.1
364,898 - -0.1
364,898 - -0.4
364,898 - -0.4
364,929 + -0.1
364,929 + -0.1
364,929 + +1.4
364,929 + +0.2
364,929 + +0.3
364,929 + +0.0
364,929 + -0.0
364,929 + +0.5
364,929 + -0.4
364,929 + -0.1
364,930 - -0.4
364,930 - +0.6
364,930 - +0.1
364,930 - +0.8
364,930 - -1.7
364,930 - -0.1
364,930 - +0.3
365,029 - -0.0
365,059 + -0.9
365,059 + +0.4
365,060 - -1.0
365,060 - -0.0
365,060 - -0.1
365,063 + -0.3
365,064 - +0.2
365,064 - +0.1
365,091 - +1.3
365,100 + +0.4
365,100 + +1.0
365,103 + +0.5
365,103 + -0.3
365,104 - -0.1
365,104 - -1.2
365,104 - -0.6
365,107 + +0.3
365,107 + -2.2
365,107 + -0.3
365,107 + -0.7
365,107 + -0.3
365,107 + -0.6
365,107 + +0.3
365,108 - +0.2
365,108 - -0.7
365,108 - +0.5
365,108 - +0.5
365,108 - +0.0
365,108 - -0.0
365,108 - -1.6
365,108 - -0.5
365,109 + -0.7
365,109 + -0.1
365,110 - +0.2
365,110 - -0.7
365,110 - -0.1
365,119 - -0.8
365,119 - -0.3
365,127 + +0.7
365,128 - -0.0
365,182 - -0.4
365,193 + -0.0
365,204 + -0.5
365,205 - +1.3
365,260 - -0.5
365,270 + +0.8
365,270 + -0.2
365,270 + +0.4
365,283 + +0.2
365,284 - +1.1
365,284 - -1.9
365,284 - +0.9
365,284 - -1.5
365,284 - +0.0
365,289 + +0.2
365,289 + -0.8
365,290 - -0.8
365,417 + EX31_RS06020 0.10 +0.3
365,417 + EX31_RS06020 0.10 -0.0
365,417 + EX31_RS06020 0.10 -0.4
365,420 + EX31_RS06020 0.10 -1.0
365,420 + EX31_RS06020 0.10 -0.9
365,420 + EX31_RS06020 0.10 -0.5
365,420 + EX31_RS06020 0.10 -0.3
365,421 - EX31_RS06020 0.11 -0.4
365,421 - EX31_RS06020 0.11 -0.7
365,421 - EX31_RS06020 0.11 -0.1
365,421 - EX31_RS06020 0.11 -0.3
365,462 + EX31_RS06020 0.16 +0.0
365,497 + EX31_RS06020 0.21 -1.1
365,498 - EX31_RS06020 0.21 +1.2
365,503 + EX31_RS06020 0.22 -0.6
365,504 - EX31_RS06020 0.22 -1.2
365,594 - EX31_RS06020 0.34 -0.5
365,594 - EX31_RS06020 0.34 -0.4
365,605 - EX31_RS06020 0.36 -2.1
365,605 - EX31_RS06020 0.36 -0.3
365,618 + EX31_RS06020 0.38 +0.5
365,618 + EX31_RS06020 0.38 -0.6
365,699 + EX31_RS06020 0.49 -0.7
365,699 + EX31_RS06020 0.49 -0.9
365,700 - EX31_RS06020 0.49 -0.3
365,700 - EX31_RS06020 0.49 +0.6
365,700 - EX31_RS06020 0.49 +0.0
365,734 - EX31_RS06020 0.54 -1.3
365,734 - EX31_RS06020 0.54 -0.8
365,826 + EX31_RS06020 0.66 -1.0
365,827 - EX31_RS06020 0.67 +0.3
365,866 - EX31_RS06020 0.72 -0.3
365,870 + EX31_RS06020 0.72 -0.6
365,913 + EX31_RS06020 0.78 -0.8
365,913 + EX31_RS06020 0.78 -0.1
365,913 + EX31_RS06020 0.78 -0.7
365,914 - EX31_RS06020 0.79 -0.1
365,914 - EX31_RS06020 0.79 +0.7
365,914 - EX31_RS06020 0.79 -0.4
365,966 - EX31_RS06020 0.86 -1.1
366,067 + +0.2
366,111 - -0.3
366,116 + +0.1
366,117 - -0.1
366,146 + -0.0
366,147 - -0.3
366,156 + -0.3
366,156 + +0.5
366,156 + -0.9
366,156 + +0.1
366,157 - -1.2
366,157 - -0.7
366,218 + EX31_RS06025 0.10 +0.2
366,218 + EX31_RS06025 0.10 +0.3
366,218 + EX31_RS06025 0.10 -0.7
366,219 - EX31_RS06025 0.10 +0.4
366,219 - EX31_RS06025 0.10 +0.6
366,219 - EX31_RS06025 0.10 -0.6
366,219 - EX31_RS06025 0.10 +0.1
366,295 + EX31_RS06025 0.24 +0.7
366,308 + EX31_RS06025 0.26 -1.5
366,308 + EX31_RS06025 0.26 +0.2
366,308 + EX31_RS06025 0.26 -1.0
366,308 + EX31_RS06025 0.26 -0.3
366,308 + EX31_RS06025 0.26 -0.5
366,309 - EX31_RS06025 0.26 +0.1
366,309 - EX31_RS06025 0.26 -0.0
366,319 + EX31_RS06025 0.28 -0.4
366,320 - EX31_RS06025 0.28 -0.9
366,320 - EX31_RS06025 0.28 -0.5
366,411 - EX31_RS06025 0.44 -0.2
366,411 - EX31_RS06025 0.44 +0.2
366,411 - EX31_RS06025 0.44 +0.1
366,412 + EX31_RS06025 0.44 +0.6
366,412 + EX31_RS06025 0.44 -0.8
366,412 + EX31_RS06025 0.44 -0.2
366,412 + EX31_RS06025 0.44 +1.4
366,412 + EX31_RS06025 0.44 -0.5
366,412 + EX31_RS06025 0.44 +0.3
366,413 - EX31_RS06025 0.44 -0.4
366,413 - EX31_RS06025 0.44 +0.0
366,413 - EX31_RS06025 0.44 -1.2
366,413 - EX31_RS06025 0.44 -0.2
366,413 - EX31_RS06025 0.44 +0.2
366,413 - EX31_RS06025 0.44 -0.5
366,413 - EX31_RS06025 0.44 -0.0
366,413 - EX31_RS06025 0.44 +0.1
366,413 - EX31_RS06025 0.44 -0.7
366,413 - EX31_RS06025 0.44 +0.0
366,416 + EX31_RS06025 0.45 +0.5
366,416 + EX31_RS06025 0.45 -0.6
366,416 + EX31_RS06025 0.45 -0.2
366,416 + EX31_RS06025 0.45 +0.1
366,416 + EX31_RS06025 0.45 -0.3
366,416 + EX31_RS06025 0.45 -0.7
366,417 - EX31_RS06025 0.45 -0.7
366,417 - EX31_RS06025 0.45 +0.1
366,417 - EX31_RS06025 0.45 +0.3
366,417 - EX31_RS06025 0.45 -0.1
366,417 - EX31_RS06025 0.45 +0.0
366,417 - EX31_RS06025 0.45 +0.0
366,417 - EX31_RS06025 0.45 +0.0
366,417 - EX31_RS06025 0.45 +0.4
366,545 + EX31_RS06025 0.67 -0.2
366,605 - EX31_RS06025 0.78 +0.4
366,625 + EX31_RS06025 0.81 +0.7
366,707 + -0.8
366,707 + +0.3
366,708 - -0.3
366,708 - -0.6
366,708 - +0.4
366,708 - -0.1
366,709 + +1.0
366,709 + -0.1
366,710 - -0.2
366,710 - +0.6
366,710 - -0.5
366,729 - +0.5
366,729 - +0.6
366,912 + +0.2
366,912 + +1.0
366,912 + -0.5
366,912 + -0.1
366,913 - -0.4
366,913 - -0.2
366,913 - -0.2
366,913 - +0.4
366,913 - -0.2
366,913 - +0.4
366,934 + -0.1
366,934 + -0.2

Or see this region's nucleotide sequence