Strain Fitness in Rahnella sp. WP5 around EX31_RS25915

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS03675 and EX31_RS25915 are separated by 563 nucleotidesEX31_RS25915 and EX31_RS03680 are separated by 93 nucleotides EX31_RS03675: EX31_RS03675 - transcriptional regulator LeuO, at 233,702 to 234,649 _RS03675 EX31_RS25915: EX31_RS25915 - leu operon leader peptide, at 235,213 to 235,296 _RS25915 EX31_RS03680: EX31_RS03680 - 2-isopropylmalate synthase, at 235,390 to 236,979 _RS03680 Position (kb) 235 236Strain fitness (log2 ratio) -2 -1 0 1at 234.221 kb on - strand, within EX31_RS03675at 234.327 kb on + strand, within EX31_RS03675at 234.328 kb on - strand, within EX31_RS03675at 234.518 kb on - strand, within EX31_RS03675at 234.518 kb on - strand, within EX31_RS03675at 234.518 kb on - strand, within EX31_RS03675at 234.532 kb on + strand, within EX31_RS03675at 234.626 kb on + strandat 234.626 kb on + strandat 234.626 kb on + strandat 234.627 kb on - strandat 234.665 kb on - strandat 234.665 kb on - strandat 234.701 kb on - strandat 234.746 kb on - strandat 234.902 kb on + strandat 234.930 kb on + strandat 234.931 kb on - strandat 234.931 kb on - strandat 234.931 kb on - strandat 234.952 kb on - strandat 234.954 kb on + strandat 234.959 kb on - strandat 235.006 kb on + strandat 235.131 kb on + strandat 235.131 kb on + strandat 235.131 kb on + strandat 235.131 kb on + strandat 235.131 kb on + strandat 235.131 kb on + strandat 235.131 kb on + strandat 235.132 kb on - strandat 235.156 kb on + strandat 235.156 kb on + strandat 235.156 kb on + strandat 235.235 kb on + strand, within EX31_RS25915at 235.235 kb on + strand, within EX31_RS25915at 235.241 kb on + strand, within EX31_RS25915at 235.241 kb on + strand, within EX31_RS25915at 235.241 kb on + strand, within EX31_RS25915at 235.241 kb on + strand, within EX31_RS25915at 235.241 kb on + strand, within EX31_RS25915at 235.241 kb on + strand, within EX31_RS25915at 235.242 kb on - strand, within EX31_RS25915at 235.244 kb on + strand, within EX31_RS25915at 235.245 kb on - strand, within EX31_RS25915at 235.245 kb on - strand, within EX31_RS25915at 235.258 kb on + strand, within EX31_RS25915at 235.258 kb on + strand, within EX31_RS25915at 235.259 kb on - strand, within EX31_RS25915at 235.315 kb on + strandat 235.315 kb on + strandat 235.315 kb on + strandat 235.346 kb on - strandat 235.367 kb on + strandat 235.384 kb on + strandat 235.385 kb on - strandat 235.446 kb on - strandat 235.446 kb on - strandat 235.446 kb on - strandat 235.464 kb on + strandat 235.629 kb on + strand, within EX31_RS03680at 235.652 kb on + strand, within EX31_RS03680at 235.653 kb on - strand, within EX31_RS03680at 235.653 kb on - strand, within EX31_RS03680at 235.653 kb on - strand, within EX31_RS03680at 235.653 kb on - strand, within EX31_RS03680at 235.698 kb on + strand, within EX31_RS03680at 235.698 kb on + strand, within EX31_RS03680at 235.742 kb on + strand, within EX31_RS03680at 235.742 kb on + strand, within EX31_RS03680at 235.742 kb on + strand, within EX31_RS03680at 235.779 kb on + strand, within EX31_RS03680at 235.783 kb on + strand, within EX31_RS03680at 235.783 kb on + strand, within EX31_RS03680at 235.783 kb on + strand, within EX31_RS03680at 235.783 kb on + strand, within EX31_RS03680at 235.784 kb on - strand, within EX31_RS03680at 235.784 kb on - strand, within EX31_RS03680at 235.784 kb on - strand, within EX31_RS03680at 235.784 kb on - strand, within EX31_RS03680at 235.784 kb on - strand, within EX31_RS03680at 235.784 kb on - strand, within EX31_RS03680at 235.909 kb on + strand, within EX31_RS03680at 235.909 kb on + strand, within EX31_RS03680at 235.951 kb on + strand, within EX31_RS03680at 235.951 kb on + strand, within EX31_RS03680at 235.951 kb on + strand, within EX31_RS03680at 235.952 kb on - strand, within EX31_RS03680at 235.952 kb on - strand, within EX31_RS03680at 235.952 kb on - strand, within EX31_RS03680at 235.974 kb on + strand, within EX31_RS03680at 235.983 kb on + strand, within EX31_RS03680at 236.025 kb on + strand, within EX31_RS03680at 236.043 kb on - strand, within EX31_RS03680at 236.149 kb on + strand, within EX31_RS03680at 236.150 kb on - strand, within EX31_RS03680at 236.150 kb on - strand, within EX31_RS03680at 236.173 kb on - strand, within EX31_RS03680at 236.173 kb on - strand, within EX31_RS03680at 236.173 kb on - strand, within EX31_RS03680at 236.189 kb on - strand, within EX31_RS03680

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
234,221 - EX31_RS03675 0.55 -2.0
234,327 + EX31_RS03675 0.66 +0.4
234,328 - EX31_RS03675 0.66 +0.5
234,518 - EX31_RS03675 0.86 -0.4
234,518 - EX31_RS03675 0.86 +0.3
234,518 - EX31_RS03675 0.86 -0.4
234,532 + EX31_RS03675 0.88 -0.8
234,626 + +0.5
234,626 + -0.7
234,626 + +0.2
234,627 - +0.4
234,665 - +0.2
234,665 - +0.7
234,701 - +0.0
234,746 - +0.1
234,902 + -0.1
234,930 + +0.2
234,931 - -0.1
234,931 - +1.0
234,931 - +0.3
234,952 - -1.1
234,954 + +0.8
234,959 - -0.5
235,006 + -0.6
235,131 + +0.1
235,131 + -1.2
235,131 + -1.5
235,131 + -0.0
235,131 + -1.4
235,131 + -0.2
235,131 + -0.1
235,132 - +0.2
235,156 + +0.5
235,156 + +0.3
235,156 + +0.5
235,235 + EX31_RS25915 0.26 +0.9
235,235 + EX31_RS25915 0.26 +0.3
235,241 + EX31_RS25915 0.33 +0.5
235,241 + EX31_RS25915 0.33 +1.0
235,241 + EX31_RS25915 0.33 +0.6
235,241 + EX31_RS25915 0.33 +0.5
235,241 + EX31_RS25915 0.33 +1.2
235,241 + EX31_RS25915 0.33 +0.5
235,242 - EX31_RS25915 0.35 +0.0
235,244 + EX31_RS25915 0.37 +1.2
235,245 - EX31_RS25915 0.38 -0.3
235,245 - EX31_RS25915 0.38 -0.7
235,258 + EX31_RS25915 0.54 +0.1
235,258 + EX31_RS25915 0.54 +0.7
235,259 - EX31_RS25915 0.55 -2.0
235,315 + +0.5
235,315 + +0.4
235,315 + +0.7
235,346 - -0.4
235,367 + -0.2
235,384 + +0.7
235,385 - +0.0
235,446 - +0.9
235,446 - +0.6
235,446 - -1.6
235,464 + +0.1
235,629 + EX31_RS03680 0.15 -0.1
235,652 + EX31_RS03680 0.16 +0.1
235,653 - EX31_RS03680 0.17 -0.1
235,653 - EX31_RS03680 0.17 -1.8
235,653 - EX31_RS03680 0.17 +0.2
235,653 - EX31_RS03680 0.17 -0.9
235,698 + EX31_RS03680 0.19 -0.9
235,698 + EX31_RS03680 0.19 +0.2
235,742 + EX31_RS03680 0.22 -0.0
235,742 + EX31_RS03680 0.22 +0.7
235,742 + EX31_RS03680 0.22 -0.3
235,779 + EX31_RS03680 0.24 +0.1
235,783 + EX31_RS03680 0.25 -1.0
235,783 + EX31_RS03680 0.25 -0.2
235,783 + EX31_RS03680 0.25 +0.3
235,783 + EX31_RS03680 0.25 +0.1
235,784 - EX31_RS03680 0.25 -0.7
235,784 - EX31_RS03680 0.25 -0.5
235,784 - EX31_RS03680 0.25 -0.7
235,784 - EX31_RS03680 0.25 +0.1
235,784 - EX31_RS03680 0.25 -0.3
235,784 - EX31_RS03680 0.25 -0.2
235,909 + EX31_RS03680 0.33 -0.7
235,909 + EX31_RS03680 0.33 -0.6
235,951 + EX31_RS03680 0.35 -0.4
235,951 + EX31_RS03680 0.35 +0.1
235,951 + EX31_RS03680 0.35 -0.1
235,952 - EX31_RS03680 0.35 +0.5
235,952 - EX31_RS03680 0.35 +0.2
235,952 - EX31_RS03680 0.35 -1.4
235,974 + EX31_RS03680 0.37 +0.2
235,983 + EX31_RS03680 0.37 +0.7
236,025 + EX31_RS03680 0.40 +1.5
236,043 - EX31_RS03680 0.41 +0.4
236,149 + EX31_RS03680 0.48 -1.4
236,150 - EX31_RS03680 0.48 +0.1
236,150 - EX31_RS03680 0.48 -0.1
236,173 - EX31_RS03680 0.49 -1.6
236,173 - EX31_RS03680 0.49 -0.8
236,173 - EX31_RS03680 0.49 +0.0
236,189 - EX31_RS03680 0.50 +0.9

Or see this region's nucleotide sequence