Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23255 and EX31_RS23260 are separated by 20 nucleotides EX31_RS23260 and EX31_RS23265 are separated by 149 nucleotides
EX31_RS23255: EX31_RS23255 - ROK family protein, at 408,970 to 410,193
_RS23255
EX31_RS23260: EX31_RS23260 - N-acetylglucosamine-6-phosphate deacetylase, at 410,214 to 411,353
_RS23260
EX31_RS23265: EX31_RS23265 - glucosamine-6-phosphate deaminase, at 411,503 to 412,303
_RS23265
Position (kb) 410
411
412 Strain fitness (log2 ratio) -2
-1
0
1
2 at 409.335 kb on - strand, within EX31_RS23255 at 409.450 kb on - strand, within EX31_RS23255 at 409.476 kb on + strand, within EX31_RS23255 at 409.532 kb on - strand, within EX31_RS23255 at 409.532 kb on - strand, within EX31_RS23255 at 409.532 kb on - strand, within EX31_RS23255 at 409.546 kb on - strand, within EX31_RS23255 at 409.577 kb on + strand, within EX31_RS23255 at 409.577 kb on + strand, within EX31_RS23255 at 409.578 kb on - strand, within EX31_RS23255 at 409.578 kb on - strand, within EX31_RS23255 at 409.578 kb on - strand, within EX31_RS23255 at 409.578 kb on - strand, within EX31_RS23255 at 409.681 kb on - strand, within EX31_RS23255 at 409.689 kb on + strand, within EX31_RS23255 at 409.690 kb on - strand, within EX31_RS23255 at 409.690 kb on - strand, within EX31_RS23255 at 409.691 kb on + strand, within EX31_RS23255 at 409.691 kb on + strand, within EX31_RS23255 at 409.691 kb on + strand, within EX31_RS23255 at 409.691 kb on + strand, within EX31_RS23255 at 409.692 kb on - strand, within EX31_RS23255 at 409.692 kb on - strand, within EX31_RS23255 at 409.692 kb on - strand, within EX31_RS23255 at 409.692 kb on - strand, within EX31_RS23255 at 409.794 kb on + strand, within EX31_RS23255 at 409.795 kb on - strand, within EX31_RS23255 at 409.848 kb on - strand, within EX31_RS23255 at 409.848 kb on - strand, within EX31_RS23255 at 409.891 kb on - strand, within EX31_RS23255 at 409.919 kb on - strand, within EX31_RS23255 at 409.929 kb on + strand, within EX31_RS23255 at 409.957 kb on - strand, within EX31_RS23255 at 409.957 kb on - strand, within EX31_RS23255 at 410.121 kb on - strand at 410.138 kb on - strand at 410.253 kb on - strand at 410.289 kb on - strand at 410.355 kb on - strand, within EX31_RS23260 at 410.476 kb on + strand, within EX31_RS23260 at 410.477 kb on - strand, within EX31_RS23260 at 410.477 kb on - strand, within EX31_RS23260 at 410.477 kb on - strand, within EX31_RS23260 at 410.479 kb on - strand, within EX31_RS23260 at 410.630 kb on - strand, within EX31_RS23260 at 410.630 kb on - strand, within EX31_RS23260 at 410.660 kb on + strand, within EX31_RS23260 at 410.661 kb on - strand, within EX31_RS23260 at 410.661 kb on - strand, within EX31_RS23260 at 410.661 kb on - strand, within EX31_RS23260 at 410.700 kb on - strand, within EX31_RS23260 at 410.701 kb on + strand, within EX31_RS23260 at 410.702 kb on - strand, within EX31_RS23260 at 410.702 kb on - strand, within EX31_RS23260 at 410.702 kb on - strand, within EX31_RS23260 at 410.702 kb on - strand, within EX31_RS23260 at 410.702 kb on - strand, within EX31_RS23260 at 410.702 kb on - strand, within EX31_RS23260 at 410.702 kb on - strand, within EX31_RS23260 at 410.702 kb on - strand, within EX31_RS23260 at 410.755 kb on + strand, within EX31_RS23260 at 410.756 kb on - strand, within EX31_RS23260 at 410.756 kb on - strand, within EX31_RS23260 at 410.756 kb on - strand, within EX31_RS23260 at 410.756 kb on - strand, within EX31_RS23260 at 410.788 kb on - strand, within EX31_RS23260 at 410.814 kb on - strand, within EX31_RS23260 at 410.814 kb on - strand, within EX31_RS23260 at 410.815 kb on + strand, within EX31_RS23260 at 410.815 kb on + strand, within EX31_RS23260 at 410.816 kb on - strand, within EX31_RS23260 at 410.816 kb on - strand, within EX31_RS23260 at 410.816 kb on - strand, within EX31_RS23260 at 410.816 kb on - strand, within EX31_RS23260 at 410.816 kb on - strand, within EX31_RS23260 at 411.004 kb on + strand, within EX31_RS23260 at 411.008 kb on + strand, within EX31_RS23260 at 411.008 kb on + strand, within EX31_RS23260 at 411.008 kb on + strand, within EX31_RS23260 at 411.009 kb on - strand, within EX31_RS23260 at 411.009 kb on - strand, within EX31_RS23260 at 411.009 kb on - strand, within EX31_RS23260 at 411.009 kb on - strand, within EX31_RS23260 at 411.009 kb on - strand, within EX31_RS23260 at 411.009 kb on - strand, within EX31_RS23260 at 411.009 kb on - strand, within EX31_RS23260 at 411.009 kb on - strand, within EX31_RS23260 at 411.037 kb on + strand, within EX31_RS23260 at 411.037 kb on + strand, within EX31_RS23260 at 411.038 kb on - strand, within EX31_RS23260 at 411.038 kb on - strand, within EX31_RS23260 at 411.038 kb on - strand, within EX31_RS23260 at 411.053 kb on + strand, within EX31_RS23260 at 411.124 kb on - strand, within EX31_RS23260 at 411.174 kb on - strand, within EX31_RS23260 at 411.326 kb on - strand at 411.326 kb on - strand at 411.326 kb on - strand at 411.326 kb on - strand at 411.326 kb on - strand at 411.350 kb on - strand at 411.350 kb on - strand at 411.350 kb on - strand at 411.350 kb on - strand at 411.364 kb on - strand at 411.364 kb on - strand at 411.364 kb on - strand at 411.364 kb on - strand at 411.366 kb on + strand at 411.367 kb on - strand at 411.367 kb on - strand at 411.367 kb on - strand at 411.367 kb on - strand at 411.367 kb on - strand at 411.428 kb on + strand at 411.429 kb on - strand at 411.429 kb on - strand at 411.429 kb on - strand at 411.429 kb on - strand at 411.429 kb on - strand at 411.437 kb on - strand at 411.437 kb on - strand at 411.531 kb on - strand at 411.544 kb on - strand at 411.637 kb on + strand, within EX31_RS23265 at 411.637 kb on + strand, within EX31_RS23265 at 411.637 kb on + strand, within EX31_RS23265 at 411.637 kb on + strand, within EX31_RS23265 at 411.637 kb on + strand, within EX31_RS23265 at 411.637 kb on + strand, within EX31_RS23265 at 411.638 kb on - strand, within EX31_RS23265 at 411.638 kb on - strand, within EX31_RS23265 at 411.638 kb on - strand, within EX31_RS23265 at 411.638 kb on - strand, within EX31_RS23265 at 411.638 kb on - strand, within EX31_RS23265 at 411.638 kb on - strand, within EX31_RS23265 at 411.638 kb on - strand, within EX31_RS23265 at 411.638 kb on - strand, within EX31_RS23265 at 411.638 kb on - strand, within EX31_RS23265 at 411.638 kb on - strand, within EX31_RS23265 at 411.638 kb on - strand, within EX31_RS23265 at 411.638 kb on - strand, within EX31_RS23265 at 411.646 kb on + strand, within EX31_RS23265 at 411.647 kb on - strand, within EX31_RS23265 at 411.647 kb on - strand, within EX31_RS23265 at 411.647 kb on - strand, within EX31_RS23265 at 411.647 kb on - strand, within EX31_RS23265 at 411.649 kb on + strand, within EX31_RS23265 at 411.649 kb on + strand, within EX31_RS23265 at 411.649 kb on + strand, within EX31_RS23265 at 411.650 kb on - strand, within EX31_RS23265 at 411.650 kb on - strand, within EX31_RS23265 at 411.829 kb on + strand, within EX31_RS23265 at 411.901 kb on + strand, within EX31_RS23265 at 411.922 kb on - strand, within EX31_RS23265 at 411.928 kb on + strand, within EX31_RS23265 at 411.928 kb on + strand, within EX31_RS23265 at 411.976 kb on + strand, within EX31_RS23265 at 411.977 kb on - strand, within EX31_RS23265 at 412.009 kb on + strand, within EX31_RS23265 at 412.009 kb on + strand, within EX31_RS23265 at 412.010 kb on - strand, within EX31_RS23265 at 412.010 kb on - strand, within EX31_RS23265 at 412.035 kb on + strand, within EX31_RS23265 at 412.039 kb on + strand, within EX31_RS23265 at 412.040 kb on - strand, within EX31_RS23265 at 412.040 kb on - strand, within EX31_RS23265 at 412.040 kb on - strand, within EX31_RS23265 at 412.045 kb on + strand, within EX31_RS23265 at 412.046 kb on - strand, within EX31_RS23265 at 412.050 kb on + strand, within EX31_RS23265 at 412.050 kb on + strand, within EX31_RS23265 at 412.083 kb on + strand, within EX31_RS23265 at 412.083 kb on + strand, within EX31_RS23265 at 412.083 kb on + strand, within EX31_RS23265 at 412.083 kb on + strand, within EX31_RS23265 at 412.083 kb on + strand, within EX31_RS23265 at 412.083 kb on + strand, within EX31_RS23265 at 412.083 kb on + strand, within EX31_RS23265 at 412.084 kb on - strand, within EX31_RS23265 at 412.084 kb on - strand, within EX31_RS23265 at 412.084 kb on - strand, within EX31_RS23265 at 412.084 kb on - strand, within EX31_RS23265 at 412.106 kb on + strand, within EX31_RS23265 at 412.106 kb on + strand, within EX31_RS23265 at 412.107 kb on - strand, within EX31_RS23265 at 412.107 kb on - strand, within EX31_RS23265 at 412.121 kb on - strand, within EX31_RS23265 at 412.121 kb on - strand, within EX31_RS23265 at 412.148 kb on + strand, within EX31_RS23265 at 412.159 kb on - strand, within EX31_RS23265 at 412.159 kb on - strand, within EX31_RS23265 at 412.187 kb on + strand, within EX31_RS23265 at 412.187 kb on + strand, within EX31_RS23265 at 412.188 kb on - strand, within EX31_RS23265 at 412.223 kb on - strand, within EX31_RS23265 at 412.223 kb on - strand, within EX31_RS23265 at 412.246 kb on + strand at 412.247 kb on - strand at 412.247 kb on - strand at 412.247 kb on - strand at 412.247 kb on - strand at 412.287 kb on - strand at 412.294 kb on + strand at 412.294 kb on + strand at 412.294 kb on + strand at 412.295 kb on - strand at 412.309 kb on - strand at 412.309 kb on - strand at 412.315 kb on + strand at 412.315 kb on + strand at 412.316 kb on - strand at 412.316 kb on - strand at 412.316 kb on - strand at 412.316 kb on - strand at 412.333 kb on + strand at 412.333 kb on + strand at 412.333 kb on + strand at 412.334 kb on - strand at 412.334 kb on - strand at 412.334 kb on - strand at 412.334 kb on - strand at 412.334 kb on - strand at 412.334 kb on - strand at 412.335 kb on + strand at 412.335 kb on + strand at 412.335 kb on + strand at 412.335 kb on + strand at 412.335 kb on + strand at 412.335 kb on + strand at 412.335 kb on + strand at 412.335 kb on + strand at 412.335 kb on + strand at 412.335 kb on + strand at 412.335 kb on + strand at 412.335 kb on + strand at 412.336 kb on - strand at 412.336 kb on - strand at 412.336 kb on - strand at 412.336 kb on - strand at 412.336 kb on - strand at 412.336 kb on - strand at 412.336 kb on - strand at 412.336 kb on - strand at 412.336 kb on - strand at 412.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 409,335 - EX31_RS23255 0.30 -0.3 409,450 - EX31_RS23255 0.39 +1.5 409,476 + EX31_RS23255 0.41 -0.4 409,532 - EX31_RS23255 0.46 +0.6 409,532 - EX31_RS23255 0.46 +0.3 409,532 - EX31_RS23255 0.46 +0.3 409,546 - EX31_RS23255 0.47 +0.8 409,577 + EX31_RS23255 0.50 -1.5 409,577 + EX31_RS23255 0.50 -2.1 409,578 - EX31_RS23255 0.50 -1.7 409,578 - EX31_RS23255 0.50 +0.2 409,578 - EX31_RS23255 0.50 -0.8 409,578 - EX31_RS23255 0.50 -0.1 409,681 - EX31_RS23255 0.58 +0.4 409,689 + EX31_RS23255 0.59 +1.8 409,690 - EX31_RS23255 0.59 +0.3 409,690 - EX31_RS23255 0.59 +0.2 409,691 + EX31_RS23255 0.59 -0.5 409,691 + EX31_RS23255 0.59 +0.3 409,691 + EX31_RS23255 0.59 -2.7 409,691 + EX31_RS23255 0.59 -0.3 409,692 - EX31_RS23255 0.59 -0.1 409,692 - EX31_RS23255 0.59 -0.3 409,692 - EX31_RS23255 0.59 -0.1 409,692 - EX31_RS23255 0.59 -0.1 409,794 + EX31_RS23255 0.67 +0.9 409,795 - EX31_RS23255 0.67 -0.1 409,848 - EX31_RS23255 0.72 -0.3 409,848 - EX31_RS23255 0.72 -0.2 409,891 - EX31_RS23255 0.75 +1.5 409,919 - EX31_RS23255 0.78 +1.5 409,929 + EX31_RS23255 0.78 +1.1 409,957 - EX31_RS23255 0.81 -0.8 409,957 - EX31_RS23255 0.81 +0.4 410,121 - +0.1 410,138 - +0.2 410,253 - +1.6 410,289 - +0.7 410,355 - EX31_RS23260 0.12 +1.0 410,476 + EX31_RS23260 0.23 -1.1 410,477 - EX31_RS23260 0.23 +0.8 410,477 - EX31_RS23260 0.23 -0.1 410,477 - EX31_RS23260 0.23 -0.1 410,479 - EX31_RS23260 0.23 -1.2 410,630 - EX31_RS23260 0.36 -0.2 410,630 - EX31_RS23260 0.36 +1.1 410,660 + EX31_RS23260 0.39 +0.4 410,661 - EX31_RS23260 0.39 +0.4 410,661 - EX31_RS23260 0.39 +0.9 410,661 - EX31_RS23260 0.39 +0.3 410,700 - EX31_RS23260 0.43 +0.8 410,701 + EX31_RS23260 0.43 +0.6 410,702 - EX31_RS23260 0.43 +2.0 410,702 - EX31_RS23260 0.43 +0.4 410,702 - EX31_RS23260 0.43 +0.9 410,702 - EX31_RS23260 0.43 +0.3 410,702 - EX31_RS23260 0.43 +1.0 410,702 - EX31_RS23260 0.43 +0.2 410,702 - EX31_RS23260 0.43 +0.5 410,702 - EX31_RS23260 0.43 +1.0 410,755 + EX31_RS23260 0.47 -0.4 410,756 - EX31_RS23260 0.48 +0.2 410,756 - EX31_RS23260 0.48 +0.5 410,756 - EX31_RS23260 0.48 +0.8 410,756 - EX31_RS23260 0.48 -0.0 410,788 - EX31_RS23260 0.50 +0.3 410,814 - EX31_RS23260 0.53 -0.4 410,814 - EX31_RS23260 0.53 +1.6 410,815 + EX31_RS23260 0.53 -0.9 410,815 + EX31_RS23260 0.53 -1.4 410,816 - EX31_RS23260 0.53 -0.4 410,816 - EX31_RS23260 0.53 +0.3 410,816 - EX31_RS23260 0.53 +0.1 410,816 - EX31_RS23260 0.53 +0.4 410,816 - EX31_RS23260 0.53 +1.2 411,004 + EX31_RS23260 0.69 -1.5 411,008 + EX31_RS23260 0.70 -1.8 411,008 + EX31_RS23260 0.70 -0.5 411,008 + EX31_RS23260 0.70 -0.4 411,009 - EX31_RS23260 0.70 -1.2 411,009 - EX31_RS23260 0.70 +1.3 411,009 - EX31_RS23260 0.70 +0.1 411,009 - EX31_RS23260 0.70 -0.1 411,009 - EX31_RS23260 0.70 +0.6 411,009 - EX31_RS23260 0.70 +1.7 411,009 - EX31_RS23260 0.70 +1.3 411,009 - EX31_RS23260 0.70 -0.1 411,037 + EX31_RS23260 0.72 +1.8 411,037 + EX31_RS23260 0.72 -1.5 411,038 - EX31_RS23260 0.72 +0.3 411,038 - EX31_RS23260 0.72 -0.3 411,038 - EX31_RS23260 0.72 -0.4 411,053 + EX31_RS23260 0.74 -0.8 411,124 - EX31_RS23260 0.80 +0.3 411,174 - EX31_RS23260 0.84 +0.7 411,326 - +0.2 411,326 - +0.3 411,326 - +1.2 411,326 - +0.7 411,326 - +0.0 411,350 - +0.2 411,350 - +0.1 411,350 - +0.6 411,350 - +0.6 411,364 - +0.7 411,364 - +0.3 411,364 - +0.3 411,364 - -0.3 411,366 + +0.8 411,367 - +0.1 411,367 - +0.3 411,367 - -0.1 411,367 - +0.1 411,367 - -0.8 411,428 + -0.5 411,429 - +0.3 411,429 - -0.5 411,429 - -0.6 411,429 - +0.1 411,429 - +0.6 411,437 - +0.4 411,437 - +0.5 411,531 - +0.3 411,544 - -0.2 411,637 + EX31_RS23265 0.17 +0.0 411,637 + EX31_RS23265 0.17 -0.2 411,637 + EX31_RS23265 0.17 +1.0 411,637 + EX31_RS23265 0.17 +0.6 411,637 + EX31_RS23265 0.17 -0.3 411,637 + EX31_RS23265 0.17 +0.5 411,638 - EX31_RS23265 0.17 +0.5 411,638 - EX31_RS23265 0.17 -0.0 411,638 - EX31_RS23265 0.17 +1.0 411,638 - EX31_RS23265 0.17 -0.0 411,638 - EX31_RS23265 0.17 -0.1 411,638 - EX31_RS23265 0.17 +0.1 411,638 - EX31_RS23265 0.17 +0.2 411,638 - EX31_RS23265 0.17 -0.2 411,638 - EX31_RS23265 0.17 +0.0 411,638 - EX31_RS23265 0.17 -0.8 411,638 - EX31_RS23265 0.17 +0.1 411,638 - EX31_RS23265 0.17 +0.6 411,646 + EX31_RS23265 0.18 -0.1 411,647 - EX31_RS23265 0.18 -0.2 411,647 - EX31_RS23265 0.18 +0.0 411,647 - EX31_RS23265 0.18 -0.5 411,647 - EX31_RS23265 0.18 +0.0 411,649 + EX31_RS23265 0.18 +0.4 411,649 + EX31_RS23265 0.18 +0.2 411,649 + EX31_RS23265 0.18 +0.3 411,650 - EX31_RS23265 0.18 +0.1 411,650 - EX31_RS23265 0.18 -0.4 411,829 + EX31_RS23265 0.41 -0.3 411,901 + EX31_RS23265 0.50 +0.7 411,922 - EX31_RS23265 0.52 -0.7 411,928 + EX31_RS23265 0.53 +0.4 411,928 + EX31_RS23265 0.53 +0.6 411,976 + EX31_RS23265 0.59 +0.7 411,977 - EX31_RS23265 0.59 -0.8 412,009 + EX31_RS23265 0.63 -0.8 412,009 + EX31_RS23265 0.63 +0.6 412,010 - EX31_RS23265 0.63 +0.3 412,010 - EX31_RS23265 0.63 -0.2 412,035 + EX31_RS23265 0.66 +0.2 412,039 + EX31_RS23265 0.67 +0.3 412,040 - EX31_RS23265 0.67 -1.0 412,040 - EX31_RS23265 0.67 +0.1 412,040 - EX31_RS23265 0.67 -0.9 412,045 + EX31_RS23265 0.68 -0.8 412,046 - EX31_RS23265 0.68 +0.6 412,050 + EX31_RS23265 0.68 -0.4 412,050 + EX31_RS23265 0.68 +0.4 412,083 + EX31_RS23265 0.72 +0.5 412,083 + EX31_RS23265 0.72 -0.9 412,083 + EX31_RS23265 0.72 -0.1 412,083 + EX31_RS23265 0.72 +0.0 412,083 + EX31_RS23265 0.72 -0.1 412,083 + EX31_RS23265 0.72 +0.6 412,083 + EX31_RS23265 0.72 -0.7 412,084 - EX31_RS23265 0.73 +1.0 412,084 - EX31_RS23265 0.73 -0.4 412,084 - EX31_RS23265 0.73 +0.8 412,084 - EX31_RS23265 0.73 -0.6 412,106 + EX31_RS23265 0.75 -0.3 412,106 + EX31_RS23265 0.75 +0.3 412,107 - EX31_RS23265 0.75 -1.4 412,107 - EX31_RS23265 0.75 +0.9 412,121 - EX31_RS23265 0.77 +0.3 412,121 - EX31_RS23265 0.77 +0.7 412,148 + EX31_RS23265 0.81 -0.0 412,159 - EX31_RS23265 0.82 +0.4 412,159 - EX31_RS23265 0.82 +1.2 412,187 + EX31_RS23265 0.85 -0.7 412,187 + EX31_RS23265 0.85 +0.9 412,188 - EX31_RS23265 0.86 +0.4 412,223 - EX31_RS23265 0.90 -0.3 412,223 - EX31_RS23265 0.90 -0.8 412,246 + -0.2 412,247 - -0.8 412,247 - -0.7 412,247 - -0.0 412,247 - +0.1 412,287 - -0.6 412,294 + -0.6 412,294 + +0.5 412,294 + +1.2 412,295 - -1.1 412,309 - +1.4 412,309 - +0.4 412,315 + +0.6 412,315 + +0.2 412,316 - +0.5 412,316 - -0.2 412,316 - +0.5 412,316 - +0.2 412,333 + +0.7 412,333 + -0.3 412,333 + +0.0 412,334 - -0.3 412,334 - -0.4 412,334 - +1.3 412,334 - -0.3 412,334 - -0.1 412,334 - -0.2 412,335 + -0.1 412,335 + +0.5 412,335 + +0.8 412,335 + +0.6 412,335 + -0.7 412,335 + +0.6 412,335 + -0.5 412,335 + +1.3 412,335 + -1.1 412,335 + +0.5 412,335 + +0.4 412,335 + -0.2 412,336 - -0.5 412,336 - -0.3 412,336 - -0.7 412,336 - -1.9 412,336 - +0.7 412,336 - +0.6 412,336 - +0.3 412,336 - +0.6 412,336 - +0.9 412,336 - -0.2
Or see this region's nucleotide sequence