Strain Fitness in Rahnella sp. WP5 around EX31_RS22610

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22600 and EX31_RS22605 are separated by 122 nucleotidesEX31_RS22605 and EX31_RS22610 overlap by 33 nucleotidesEX31_RS22610 and EX31_RS22615 overlap by 4 nucleotides EX31_RS22600: EX31_RS22600 - SDR family oxidoreductase, at 275,429 to 276,205 _RS22600 EX31_RS22605: EX31_RS22605 - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 276,328 to 276,960 _RS22605 EX31_RS22610: EX31_RS22610 - ABC transporter ATP-binding protein, at 276,928 to 277,614 _RS22610 EX31_RS22615: EX31_RS22615 - ABC transporter permease, at 277,611 to 280,043 _RS22615 Position (kb) 276 277 278Strain fitness (log2 ratio) -2 -1 0 1 2at 275.946 kb on + strand, within EX31_RS22600at 275.946 kb on + strand, within EX31_RS22600at 275.946 kb on + strand, within EX31_RS22600at 275.965 kb on + strand, within EX31_RS22600at 275.966 kb on - strand, within EX31_RS22600at 275.966 kb on - strand, within EX31_RS22600at 275.968 kb on + strand, within EX31_RS22600at 275.968 kb on + strand, within EX31_RS22600at 275.968 kb on + strand, within EX31_RS22600at 275.969 kb on - strand, within EX31_RS22600at 275.979 kb on + strand, within EX31_RS22600at 275.979 kb on + strand, within EX31_RS22600at 276.058 kb on + strand, within EX31_RS22600at 276.058 kb on + strand, within EX31_RS22600at 276.058 kb on + strand, within EX31_RS22600at 276.058 kb on + strand, within EX31_RS22600at 276.059 kb on - strand, within EX31_RS22600at 276.059 kb on - strand, within EX31_RS22600at 276.188 kb on + strandat 276.188 kb on + strandat 276.188 kb on + strandat 276.188 kb on + strandat 276.188 kb on + strandat 276.189 kb on - strandat 276.189 kb on - strandat 276.192 kb on - strandat 276.211 kb on + strandat 276.249 kb on - strandat 276.251 kb on + strandat 276.251 kb on + strandat 276.252 kb on - strandat 276.273 kb on - strandat 276.286 kb on + strandat 276.329 kb on + strandat 276.329 kb on + strandat 276.375 kb on + strandat 276.375 kb on + strandat 276.376 kb on - strandat 276.403 kb on + strand, within EX31_RS22605at 276.403 kb on + strand, within EX31_RS22605at 276.404 kb on - strand, within EX31_RS22605at 276.498 kb on - strand, within EX31_RS22605at 276.506 kb on + strand, within EX31_RS22605at 276.506 kb on + strand, within EX31_RS22605at 276.506 kb on + strand, within EX31_RS22605at 276.507 kb on - strand, within EX31_RS22605at 276.507 kb on - strand, within EX31_RS22605at 276.507 kb on - strand, within EX31_RS22605at 276.533 kb on + strand, within EX31_RS22605at 276.533 kb on + strand, within EX31_RS22605at 276.533 kb on + strand, within EX31_RS22605at 276.586 kb on + strand, within EX31_RS22605at 276.747 kb on + strand, within EX31_RS22605at 276.748 kb on - strand, within EX31_RS22605at 276.760 kb on + strand, within EX31_RS22605at 276.761 kb on - strand, within EX31_RS22605at 276.761 kb on - strand, within EX31_RS22605at 276.795 kb on + strand, within EX31_RS22605at 276.796 kb on - strand, within EX31_RS22605at 276.802 kb on + strand, within EX31_RS22605at 276.837 kb on - strand, within EX31_RS22605at 276.874 kb on - strand, within EX31_RS22605at 276.907 kb on + strandat 276.915 kb on + strandat 276.915 kb on + strandat 276.915 kb on + strandat 276.915 kb on + strandat 276.915 kb on + strandat 276.915 kb on + strandat 276.915 kb on + strandat 276.915 kb on + strandat 276.915 kb on + strandat 276.915 kb on + strandat 276.916 kb on - strandat 276.916 kb on - strandat 276.962 kb on + strandat 276.962 kb on + strandat 276.962 kb on + strandat 276.962 kb on + strandat 276.962 kb on + strandat 276.962 kb on + strandat 276.962 kb on + strandat 276.962 kb on + strandat 276.962 kb on + strandat 276.962 kb on + strandat 276.962 kb on + strandat 276.962 kb on + strandat 276.962 kb on + strandat 276.962 kb on + strandat 276.962 kb on + strandat 276.963 kb on - strandat 276.963 kb on - strandat 276.963 kb on - strandat 276.963 kb on - strandat 276.963 kb on - strandat 276.963 kb on - strandat 276.963 kb on - strandat 276.963 kb on - strandat 276.966 kb on + strandat 276.966 kb on + strandat 276.966 kb on + strandat 276.966 kb on + strandat 276.966 kb on + strandat 276.966 kb on + strandat 276.966 kb on + strandat 276.966 kb on + strandat 276.967 kb on - strandat 277.140 kb on + strand, within EX31_RS22610at 277.141 kb on - strand, within EX31_RS22610at 277.427 kb on + strand, within EX31_RS22610at 277.427 kb on + strand, within EX31_RS22610at 277.427 kb on + strand, within EX31_RS22610at 277.427 kb on + strand, within EX31_RS22610at 277.428 kb on - strand, within EX31_RS22610at 277.479 kb on + strand, within EX31_RS22610at 277.480 kb on - strand, within EX31_RS22610at 277.480 kb on - strand, within EX31_RS22610at 277.480 kb on - strand, within EX31_RS22610at 277.480 kb on - strand, within EX31_RS22610at 277.599 kb on - strandat 277.862 kb on + strand, within EX31_RS22615at 277.862 kb on + strand, within EX31_RS22615at 277.863 kb on - strand, within EX31_RS22615at 277.863 kb on - strand, within EX31_RS22615at 277.863 kb on - strand, within EX31_RS22615at 277.863 kb on - strand, within EX31_RS22615at 277.926 kb on + strand, within EX31_RS22615at 278.023 kb on + strand, within EX31_RS22615at 278.024 kb on - strand, within EX31_RS22615at 278.054 kb on + strand, within EX31_RS22615at 278.193 kb on + strand, within EX31_RS22615at 278.193 kb on + strand, within EX31_RS22615at 278.193 kb on + strand, within EX31_RS22615at 278.193 kb on + strand, within EX31_RS22615at 278.193 kb on + strand, within EX31_RS22615at 278.194 kb on - strand, within EX31_RS22615at 278.194 kb on - strand, within EX31_RS22615at 278.194 kb on - strand, within EX31_RS22615at 278.199 kb on + strand, within EX31_RS22615at 278.199 kb on + strand, within EX31_RS22615at 278.199 kb on + strand, within EX31_RS22615at 278.199 kb on + strand, within EX31_RS22615at 278.200 kb on - strand, within EX31_RS22615at 278.200 kb on - strand, within EX31_RS22615at 278.200 kb on - strand, within EX31_RS22615at 278.200 kb on - strand, within EX31_RS22615at 278.201 kb on + strand, within EX31_RS22615at 278.201 kb on + strand, within EX31_RS22615at 278.201 kb on + strand, within EX31_RS22615at 278.201 kb on + strand, within EX31_RS22615at 278.201 kb on + strand, within EX31_RS22615at 278.201 kb on + strand, within EX31_RS22615at 278.201 kb on + strand, within EX31_RS22615at 278.202 kb on - strand, within EX31_RS22615at 278.202 kb on - strand, within EX31_RS22615at 278.202 kb on - strand, within EX31_RS22615at 278.202 kb on - strand, within EX31_RS22615at 278.202 kb on - strand, within EX31_RS22615at 278.202 kb on - strand, within EX31_RS22615at 278.202 kb on - strand, within EX31_RS22615at 278.248 kb on + strand, within EX31_RS22615at 278.261 kb on + strand, within EX31_RS22615at 278.261 kb on + strand, within EX31_RS22615at 278.262 kb on - strand, within EX31_RS22615at 278.262 kb on - strand, within EX31_RS22615at 278.320 kb on + strand, within EX31_RS22615

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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275,946 + EX31_RS22600 0.67 +0.0
275,946 + EX31_RS22600 0.67 -0.9
275,946 + EX31_RS22600 0.67 +0.6
275,965 + EX31_RS22600 0.69 -0.5
275,966 - EX31_RS22600 0.69 -0.7
275,966 - EX31_RS22600 0.69 +1.2
275,968 + EX31_RS22600 0.69 -0.9
275,968 + EX31_RS22600 0.69 -0.6
275,968 + EX31_RS22600 0.69 +0.4
275,969 - EX31_RS22600 0.69 -0.1
275,979 + EX31_RS22600 0.71 -0.5
275,979 + EX31_RS22600 0.71 +0.4
276,058 + EX31_RS22600 0.81 +0.2
276,058 + EX31_RS22600 0.81 -1.1
276,058 + EX31_RS22600 0.81 +0.7
276,058 + EX31_RS22600 0.81 +1.9
276,059 - EX31_RS22600 0.81 +0.0
276,059 - EX31_RS22600 0.81 +0.1
276,188 + -0.0
276,188 + -0.9
276,188 + +0.2
276,188 + -0.1
276,188 + +0.1
276,189 - -0.4
276,189 - +0.7
276,192 - -0.2
276,211 + +0.3
276,249 - +0.3
276,251 + -0.2
276,251 + +0.4
276,252 - -0.0
276,273 - -1.1
276,286 + +0.1
276,329 + -0.0
276,329 + -0.5
276,375 + +0.7
276,375 + +0.3
276,376 - -0.3
276,403 + EX31_RS22605 0.12 +0.5
276,403 + EX31_RS22605 0.12 -1.2
276,404 - EX31_RS22605 0.12 +0.0
276,498 - EX31_RS22605 0.27 -0.4
276,506 + EX31_RS22605 0.28 +0.1
276,506 + EX31_RS22605 0.28 +0.3
276,506 + EX31_RS22605 0.28 -0.4
276,507 - EX31_RS22605 0.28 -1.4
276,507 - EX31_RS22605 0.28 +0.4
276,507 - EX31_RS22605 0.28 -0.2
276,533 + EX31_RS22605 0.32 -0.2
276,533 + EX31_RS22605 0.32 +0.8
276,533 + EX31_RS22605 0.32 +0.3
276,586 + EX31_RS22605 0.41 +0.3
276,747 + EX31_RS22605 0.66 -0.4
276,748 - EX31_RS22605 0.66 -0.4
276,760 + EX31_RS22605 0.68 +0.9
276,761 - EX31_RS22605 0.68 -0.0
276,761 - EX31_RS22605 0.68 -0.2
276,795 + EX31_RS22605 0.74 -0.2
276,796 - EX31_RS22605 0.74 +0.4
276,802 + EX31_RS22605 0.75 -0.9
276,837 - EX31_RS22605 0.80 +0.6
276,874 - EX31_RS22605 0.86 +1.4
276,907 + +0.4
276,915 + -1.4
276,915 + -0.0
276,915 + +2.2
276,915 + +1.0
276,915 + -0.3
276,915 + +0.9
276,915 + +0.8
276,915 + -0.1
276,915 + -0.5
276,915 + +0.8
276,916 - +0.5
276,916 - -0.8
276,962 + +1.5
276,962 + +0.2
276,962 + +0.4
276,962 + +1.1
276,962 + +0.4
276,962 + +0.7
276,962 + -0.2
276,962 + +0.2
276,962 + +0.3
276,962 + +0.4
276,962 + -0.1
276,962 + +0.4
276,962 + -0.3
276,962 + +0.3
276,962 + +0.3
276,963 - -1.4
276,963 - -0.3
276,963 - +0.1
276,963 - -0.2
276,963 - +0.5
276,963 - -0.8
276,963 - +0.6
276,963 - -0.4
276,966 + -0.1
276,966 + -0.4
276,966 + +0.3
276,966 + -0.1
276,966 + +0.6
276,966 + -0.0
276,966 + -0.8
276,966 + -0.2
276,967 - +0.1
277,140 + EX31_RS22610 0.31 +0.7
277,141 - EX31_RS22610 0.31 -1.2
277,427 + EX31_RS22610 0.73 +0.5
277,427 + EX31_RS22610 0.73 +0.1
277,427 + EX31_RS22610 0.73 +0.1
277,427 + EX31_RS22610 0.73 +0.2
277,428 - EX31_RS22610 0.73 +1.4
277,479 + EX31_RS22610 0.80 +0.5
277,480 - EX31_RS22610 0.80 +0.6
277,480 - EX31_RS22610 0.80 +0.7
277,480 - EX31_RS22610 0.80 +0.4
277,480 - EX31_RS22610 0.80 +0.8
277,599 - -0.1
277,862 + EX31_RS22615 0.10 +1.3
277,862 + EX31_RS22615 0.10 -0.3
277,863 - EX31_RS22615 0.10 +0.2
277,863 - EX31_RS22615 0.10 +0.2
277,863 - EX31_RS22615 0.10 -0.1
277,863 - EX31_RS22615 0.10 -0.7
277,926 + EX31_RS22615 0.13 +1.0
278,023 + EX31_RS22615 0.17 -0.0
278,024 - EX31_RS22615 0.17 -0.2
278,054 + EX31_RS22615 0.18 +0.6
278,193 + EX31_RS22615 0.24 -0.1
278,193 + EX31_RS22615 0.24 -0.3
278,193 + EX31_RS22615 0.24 +0.6
278,193 + EX31_RS22615 0.24 +1.0
278,193 + EX31_RS22615 0.24 +0.1
278,194 - EX31_RS22615 0.24 +0.2
278,194 - EX31_RS22615 0.24 -2.7
278,194 - EX31_RS22615 0.24 -0.1
278,199 + EX31_RS22615 0.24 +0.6
278,199 + EX31_RS22615 0.24 +1.7
278,199 + EX31_RS22615 0.24 -0.6
278,199 + EX31_RS22615 0.24 -0.7
278,200 - EX31_RS22615 0.24 +0.1
278,200 - EX31_RS22615 0.24 +1.2
278,200 - EX31_RS22615 0.24 -0.2
278,200 - EX31_RS22615 0.24 -1.1
278,201 + EX31_RS22615 0.24 -0.2
278,201 + EX31_RS22615 0.24 +0.2
278,201 + EX31_RS22615 0.24 +0.4
278,201 + EX31_RS22615 0.24 +1.1
278,201 + EX31_RS22615 0.24 -0.2
278,201 + EX31_RS22615 0.24 +0.5
278,201 + EX31_RS22615 0.24 -0.6
278,202 - EX31_RS22615 0.24 +0.6
278,202 - EX31_RS22615 0.24 +0.3
278,202 - EX31_RS22615 0.24 -0.7
278,202 - EX31_RS22615 0.24 +0.3
278,202 - EX31_RS22615 0.24 -0.1
278,202 - EX31_RS22615 0.24 -0.2
278,202 - EX31_RS22615 0.24 -0.7
278,248 + EX31_RS22615 0.26 -0.1
278,261 + EX31_RS22615 0.27 -0.8
278,261 + EX31_RS22615 0.27 -0.1
278,262 - EX31_RS22615 0.27 +0.5
278,262 - EX31_RS22615 0.27 -1.9
278,320 + EX31_RS22615 0.29 +0.0

Or see this region's nucleotide sequence