Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19975 and EX31_RS19980 are separated by 871 nucleotides EX31_RS19980 and EX31_RS19985 are separated by 4 nucleotides EX31_RS19985 and EX31_RS19990 overlap by 14 nucleotides EX31_RS19990 and EX31_RS19995 are separated by 32 nucleotides
EX31_RS19975: EX31_RS19975 - curlin, at 625,176 to 625,664
_RS19975
EX31_RS19980: EX31_RS19980 - transcriptional regulator CsgD, at 626,536 to 627,186
_RS19980
EX31_RS19985: EX31_RS19985 - curli production assembly/transport protein CsgE, at 627,191 to 627,586
_RS19985
EX31_RS19990: EX31_RS19990 - curli production assembly/transport protein CsgF, at 627,573 to 628,037
_RS19990
EX31_RS19995: EX31_RS19995 - curli production assembly/transport protein CsgG, at 628,070 to 628,903
_RS19995
Position (kb) 626
627
628 Strain fitness (log2 ratio) -2
-1
0
1
2 at 625.677 kb on + strand at 625.679 kb on + strand at 625.680 kb on - strand at 625.960 kb on - strand at 626.046 kb on - strand at 626.046 kb on - strand at 626.046 kb on - strand at 626.046 kb on - strand at 626.109 kb on + strand at 626.109 kb on + strand at 626.110 kb on - strand at 626.123 kb on + strand at 626.123 kb on + strand at 626.123 kb on + strand at 626.124 kb on - strand at 626.165 kb on + strand at 626.177 kb on - strand at 626.177 kb on - strand at 626.177 kb on - strand at 626.177 kb on - strand at 626.186 kb on + strand at 626.225 kb on + strand at 626.226 kb on - strand at 626.236 kb on + strand at 626.236 kb on + strand at 626.268 kb on + strand at 626.268 kb on + strand at 626.323 kb on + strand at 626.432 kb on + strand at 626.441 kb on - strand at 626.467 kb on + strand at 626.486 kb on - strand at 626.595 kb on - strand at 626.664 kb on + strand, within EX31_RS19980 at 626.699 kb on + strand, within EX31_RS19980 at 626.789 kb on + strand, within EX31_RS19980 at 626.812 kb on + strand, within EX31_RS19980 at 626.923 kb on + strand, within EX31_RS19980 at 626.923 kb on + strand, within EX31_RS19980 at 626.923 kb on + strand, within EX31_RS19980 at 626.924 kb on - strand, within EX31_RS19980 at 626.924 kb on - strand, within EX31_RS19980 at 626.924 kb on - strand, within EX31_RS19980 at 626.924 kb on - strand, within EX31_RS19980 at 626.947 kb on + strand, within EX31_RS19980 at 626.947 kb on + strand, within EX31_RS19980 at 626.947 kb on + strand, within EX31_RS19980 at 626.947 kb on + strand, within EX31_RS19980 at 627.036 kb on - strand, within EX31_RS19980 at 627.110 kb on - strand, within EX31_RS19980 at 627.197 kb on - strand at 627.197 kb on - strand at 627.204 kb on + strand at 627.235 kb on - strand, within EX31_RS19985 at 627.270 kb on + strand, within EX31_RS19985 at 627.270 kb on + strand, within EX31_RS19985 at 627.270 kb on + strand, within EX31_RS19985 at 627.270 kb on + strand, within EX31_RS19985 at 627.270 kb on + strand, within EX31_RS19985 at 627.271 kb on - strand, within EX31_RS19985 at 627.271 kb on - strand, within EX31_RS19985 at 627.271 kb on - strand, within EX31_RS19985 at 627.271 kb on - strand, within EX31_RS19985 at 627.427 kb on - strand, within EX31_RS19985 at 627.443 kb on + strand, within EX31_RS19985 at 627.478 kb on + strand, within EX31_RS19985 at 627.510 kb on + strand, within EX31_RS19985 at 627.510 kb on + strand, within EX31_RS19985 at 627.511 kb on - strand, within EX31_RS19985 at 627.522 kb on + strand, within EX31_RS19985 at 627.537 kb on + strand, within EX31_RS19985 at 627.585 kb on - strand at 627.599 kb on + strand at 627.600 kb on - strand at 627.600 kb on - strand at 627.600 kb on - strand at 627.617 kb on + strand at 627.617 kb on + strand at 627.618 kb on - strand at 627.738 kb on - strand, within EX31_RS19990 at 627.738 kb on - strand, within EX31_RS19990 at 627.780 kb on + strand, within EX31_RS19990 at 627.780 kb on + strand, within EX31_RS19990 at 627.780 kb on + strand, within EX31_RS19990 at 627.781 kb on - strand, within EX31_RS19990 at 627.781 kb on - strand, within EX31_RS19990 at 627.781 kb on - strand, within EX31_RS19990 at 627.782 kb on + strand, within EX31_RS19990 at 627.782 kb on + strand, within EX31_RS19990 at 627.798 kb on + strand, within EX31_RS19990 at 627.799 kb on - strand, within EX31_RS19990 at 628.002 kb on - strand at 628.079 kb on + strand at 628.079 kb on + strand at 628.079 kb on + strand at 628.079 kb on + strand at 628.080 kb on - strand at 628.080 kb on - strand at 628.080 kb on - strand at 628.080 kb on - strand at 628.080 kb on - strand at 628.083 kb on + strand at 628.083 kb on + strand at 628.083 kb on + strand at 628.083 kb on + strand at 628.084 kb on - strand at 628.084 kb on - strand at 628.084 kb on - strand at 628.084 kb on - strand at 628.086 kb on + strand at 628.087 kb on - strand at 628.155 kb on + strand, within EX31_RS19995 at 628.155 kb on + strand, within EX31_RS19995 at 628.155 kb on + strand, within EX31_RS19995 at 628.156 kb on - strand, within EX31_RS19995 at 628.175 kb on + strand, within EX31_RS19995 at 628.175 kb on + strand, within EX31_RS19995 at 628.175 kb on + strand, within EX31_RS19995 at 628.176 kb on - strand, within EX31_RS19995 at 628.176 kb on - strand, within EX31_RS19995 at 628.176 kb on - strand, within EX31_RS19995 at 628.176 kb on - strand, within EX31_RS19995 at 628.176 kb on - strand, within EX31_RS19995 at 628.178 kb on - strand, within EX31_RS19995 at 628.178 kb on - strand, within EX31_RS19995 at 628.178 kb on - strand, within EX31_RS19995
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 625,677 + -0.4 625,679 + +0.1 625,680 - -0.2 625,960 - -1.1 626,046 - -0.2 626,046 - +0.1 626,046 - +0.3 626,046 - -1.0 626,109 + -0.6 626,109 + +2.0 626,110 - -0.7 626,123 + +0.0 626,123 + +0.1 626,123 + +0.4 626,124 - -0.3 626,165 + -0.3 626,177 - -0.0 626,177 - -0.5 626,177 - -0.5 626,177 - +2.0 626,186 + +0.3 626,225 + -1.7 626,226 - -0.3 626,236 + -2.4 626,236 + -1.6 626,268 + -0.6 626,268 + -1.1 626,323 + -0.3 626,432 + -0.1 626,441 - +0.1 626,467 + +0.4 626,486 - -1.1 626,595 - -1.0 626,664 + EX31_RS19980 0.20 -0.6 626,699 + EX31_RS19980 0.25 -0.4 626,789 + EX31_RS19980 0.39 +1.2 626,812 + EX31_RS19980 0.42 +0.8 626,923 + EX31_RS19980 0.59 +0.6 626,923 + EX31_RS19980 0.59 -1.4 626,923 + EX31_RS19980 0.59 -0.1 626,924 - EX31_RS19980 0.60 -0.8 626,924 - EX31_RS19980 0.60 +0.3 626,924 - EX31_RS19980 0.60 -0.4 626,924 - EX31_RS19980 0.60 -0.4 626,947 + EX31_RS19980 0.63 -1.3 626,947 + EX31_RS19980 0.63 +0.3 626,947 + EX31_RS19980 0.63 +0.1 626,947 + EX31_RS19980 0.63 -0.5 627,036 - EX31_RS19980 0.77 +0.2 627,110 - EX31_RS19980 0.88 -1.2 627,197 - +0.4 627,197 - +0.3 627,204 + -0.5 627,235 - EX31_RS19985 0.11 -0.8 627,270 + EX31_RS19985 0.20 -0.4 627,270 + EX31_RS19985 0.20 +2.6 627,270 + EX31_RS19985 0.20 +0.9 627,270 + EX31_RS19985 0.20 -0.0 627,270 + EX31_RS19985 0.20 -0.4 627,271 - EX31_RS19985 0.20 +1.2 627,271 - EX31_RS19985 0.20 -0.1 627,271 - EX31_RS19985 0.20 +0.2 627,271 - EX31_RS19985 0.20 -0.0 627,427 - EX31_RS19985 0.60 +0.3 627,443 + EX31_RS19985 0.64 -0.2 627,478 + EX31_RS19985 0.72 -0.1 627,510 + EX31_RS19985 0.81 -0.1 627,510 + EX31_RS19985 0.81 -0.1 627,511 - EX31_RS19985 0.81 -0.9 627,522 + EX31_RS19985 0.84 +0.0 627,537 + EX31_RS19985 0.87 -0.6 627,585 - -0.7 627,599 + -0.0 627,600 - +0.1 627,600 - +0.5 627,600 - +0.3 627,617 + -0.4 627,617 + -0.3 627,618 - +0.4 627,738 - EX31_RS19990 0.35 +0.1 627,738 - EX31_RS19990 0.35 -0.2 627,780 + EX31_RS19990 0.45 +0.5 627,780 + EX31_RS19990 0.45 -0.5 627,780 + EX31_RS19990 0.45 +2.0 627,781 - EX31_RS19990 0.45 -0.7 627,781 - EX31_RS19990 0.45 -0.1 627,781 - EX31_RS19990 0.45 +0.2 627,782 + EX31_RS19990 0.45 -0.0 627,782 + EX31_RS19990 0.45 -0.8 627,798 + EX31_RS19990 0.48 -0.8 627,799 - EX31_RS19990 0.49 +1.0 628,002 - +1.0 628,079 + -1.1 628,079 + -0.3 628,079 + +0.8 628,079 + +0.2 628,080 - +0.7 628,080 - -0.5 628,080 - -0.4 628,080 - +0.1 628,080 - -1.1 628,083 + -0.2 628,083 + -0.3 628,083 + -0.0 628,083 + -0.7 628,084 - +0.5 628,084 - +0.9 628,084 - -0.6 628,084 - -0.0 628,086 + -0.5 628,087 - +0.1 628,155 + EX31_RS19995 0.10 -0.1 628,155 + EX31_RS19995 0.10 +0.3 628,155 + EX31_RS19995 0.10 +0.2 628,156 - EX31_RS19995 0.10 -1.5 628,175 + EX31_RS19995 0.13 -1.0 628,175 + EX31_RS19995 0.13 -0.6 628,175 + EX31_RS19995 0.13 +0.4 628,176 - EX31_RS19995 0.13 -0.7 628,176 - EX31_RS19995 0.13 +0.3 628,176 - EX31_RS19995 0.13 +1.0 628,176 - EX31_RS19995 0.13 +0.9 628,176 - EX31_RS19995 0.13 +0.3 628,178 - EX31_RS19995 0.13 +1.2 628,178 - EX31_RS19995 0.13 -0.1 628,178 - EX31_RS19995 0.13 -0.5
Or see this region's nucleotide sequence