Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18930 and EX31_RS18935 are separated by 58 nucleotides EX31_RS18935 and EX31_RS18940 are separated by 55 nucleotides
EX31_RS18930: EX31_RS18930 - capsular biosynthesis protein, at 371,257 to 372,249
_RS18930
EX31_RS18935: EX31_RS18935 - sugar phosphotransferase, at 372,308 to 373,756
_RS18935
EX31_RS18940: EX31_RS18940 - glycosyltransferase family 61 protein, at 373,812 to 374,921
_RS18940
Position (kb) 372
373
374 Strain fitness (log2 ratio) -2
-1
0
1
2 at 371.483 kb on + strand, within EX31_RS18930 at 371.544 kb on + strand, within EX31_RS18930 at 371.611 kb on + strand, within EX31_RS18930 at 371.818 kb on + strand, within EX31_RS18930 at 372.018 kb on + strand, within EX31_RS18930 at 372.022 kb on + strand, within EX31_RS18930 at 372.087 kb on + strand, within EX31_RS18930 at 372.113 kb on + strand, within EX31_RS18930 at 372.215 kb on + strand at 372.257 kb on + strand at 372.357 kb on + strand at 372.431 kb on + strand at 372.460 kb on - strand, within EX31_RS18935 at 372.593 kb on + strand, within EX31_RS18935 at 372.601 kb on + strand, within EX31_RS18935 at 372.601 kb on + strand, within EX31_RS18935 at 372.601 kb on + strand, within EX31_RS18935 at 372.601 kb on + strand, within EX31_RS18935 at 372.685 kb on + strand, within EX31_RS18935 at 372.704 kb on + strand, within EX31_RS18935 at 372.812 kb on + strand, within EX31_RS18935 at 372.813 kb on - strand, within EX31_RS18935 at 372.989 kb on + strand, within EX31_RS18935 at 372.989 kb on + strand, within EX31_RS18935 at 373.010 kb on - strand, within EX31_RS18935 at 373.014 kb on - strand, within EX31_RS18935 at 373.018 kb on - strand, within EX31_RS18935 at 373.198 kb on + strand, within EX31_RS18935 at 373.422 kb on + strand, within EX31_RS18935 at 373.539 kb on + strand, within EX31_RS18935 at 373.681 kb on + strand at 373.769 kb on + strand at 373.811 kb on - strand at 373.896 kb on - strand at 373.896 kb on - strand at 373.902 kb on + strand at 373.991 kb on + strand, within EX31_RS18940 at 373.991 kb on + strand, within EX31_RS18940 at 373.992 kb on - strand, within EX31_RS18940 at 373.996 kb on - strand, within EX31_RS18940 at 374.103 kb on + strand, within EX31_RS18940 at 374.291 kb on + strand, within EX31_RS18940 at 374.352 kb on + strand, within EX31_RS18940 at 374.379 kb on - strand, within EX31_RS18940 at 374.509 kb on + strand, within EX31_RS18940 at 374.646 kb on - strand, within EX31_RS18940 at 374.646 kb on - strand, within EX31_RS18940 at 374.659 kb on + strand, within EX31_RS18940 at 374.675 kb on + strand, within EX31_RS18940 at 374.676 kb on - strand, within EX31_RS18940 at 374.676 kb on - strand, within EX31_RS18940 at 374.689 kb on - strand, within EX31_RS18940
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 371,483 + EX31_RS18930 0.23 -0.0 371,544 + EX31_RS18930 0.29 -0.9 371,611 + EX31_RS18930 0.36 +0.2 371,818 + EX31_RS18930 0.56 -0.9 372,018 + EX31_RS18930 0.77 -0.0 372,022 + EX31_RS18930 0.77 +0.2 372,087 + EX31_RS18930 0.84 -0.2 372,113 + EX31_RS18930 0.86 -0.9 372,215 + +0.4 372,257 + -1.1 372,357 + -0.4 372,431 + -0.1 372,460 - EX31_RS18935 0.10 -1.3 372,593 + EX31_RS18935 0.20 -0.3 372,601 + EX31_RS18935 0.20 -1.5 372,601 + EX31_RS18935 0.20 -0.7 372,601 + EX31_RS18935 0.20 -1.1 372,601 + EX31_RS18935 0.20 -1.0 372,685 + EX31_RS18935 0.26 -0.8 372,704 + EX31_RS18935 0.27 -0.5 372,812 + EX31_RS18935 0.35 -1.0 372,813 - EX31_RS18935 0.35 -0.3 372,989 + EX31_RS18935 0.47 +0.8 372,989 + EX31_RS18935 0.47 +0.2 373,010 - EX31_RS18935 0.48 -0.8 373,014 - EX31_RS18935 0.49 -1.3 373,018 - EX31_RS18935 0.49 -1.1 373,198 + EX31_RS18935 0.61 -0.1 373,422 + EX31_RS18935 0.77 +1.7 373,539 + EX31_RS18935 0.85 -1.2 373,681 + -1.5 373,769 + -0.5 373,811 - +0.4 373,896 - +1.0 373,896 - -0.5 373,902 + -0.9 373,991 + EX31_RS18940 0.16 +2.3 373,991 + EX31_RS18940 0.16 -0.3 373,992 - EX31_RS18940 0.16 -0.8 373,996 - EX31_RS18940 0.17 +0.7 374,103 + EX31_RS18940 0.26 -0.2 374,291 + EX31_RS18940 0.43 -1.1 374,352 + EX31_RS18940 0.49 -0.8 374,379 - EX31_RS18940 0.51 -1.4 374,509 + EX31_RS18940 0.63 -0.3 374,646 - EX31_RS18940 0.75 +0.8 374,646 - EX31_RS18940 0.75 +0.3 374,659 + EX31_RS18940 0.76 +0.1 374,675 + EX31_RS18940 0.78 -1.0 374,676 - EX31_RS18940 0.78 -2.6 374,676 - EX31_RS18940 0.78 -0.4 374,689 - EX31_RS18940 0.79 +0.2
Or see this region's nucleotide sequence