Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18755 and EX31_RS18760 are separated by 74 nucleotides EX31_RS18760 and EX31_RS18765 are separated by 245 nucleotides EX31_RS18765 and EX31_RS18770 are separated by 2 nucleotides EX31_RS18770 and EX31_RS18775 are separated by 182 nucleotides
EX31_RS18755: EX31_RS18755 - autotransporter outer membrane beta-barrel domain-containing protein, at 334,138 to 337,089
_RS18755
EX31_RS18760: EX31_RS18760 - DeoR/GlpR transcriptional regulator, at 337,164 to 337,397
_RS18760
EX31_RS18765: EX31_RS18765 - molybdopterin molybdotransferase MoeA, at 337,643 to 338,884
_RS18765
EX31_RS18770: EX31_RS18770 - molybdopterin-synthase adenylyltransferase MoeB, at 338,887 to 339,648
_RS18770
EX31_RS18775: EX31_RS18775 - ABC-F family ATPase, at 339,831 to 341,423
_RS18775
Position (kb) 337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 336.671 kb on - strand, within EX31_RS18755 at 336.671 kb on - strand, within EX31_RS18755 at 336.671 kb on - strand, within EX31_RS18755 at 336.718 kb on + strand, within EX31_RS18755 at 336.718 kb on + strand, within EX31_RS18755 at 336.719 kb on - strand, within EX31_RS18755 at 336.719 kb on - strand, within EX31_RS18755 at 336.719 kb on - strand, within EX31_RS18755 at 336.724 kb on + strand, within EX31_RS18755 at 336.725 kb on - strand, within EX31_RS18755 at 336.815 kb on + strand at 336.860 kb on - strand at 336.875 kb on + strand at 336.875 kb on + strand at 336.903 kb on + strand at 336.930 kb on + strand at 336.930 kb on + strand at 336.931 kb on - strand at 336.931 kb on - strand at 336.953 kb on - strand at 336.997 kb on - strand at 336.997 kb on - strand at 337.006 kb on + strand at 337.006 kb on + strand at 337.006 kb on + strand at 337.006 kb on + strand at 337.006 kb on + strand at 337.006 kb on + strand at 337.006 kb on + strand at 337.006 kb on + strand at 337.006 kb on + strand at 337.006 kb on + strand at 337.006 kb on + strand at 337.007 kb on - strand at 337.007 kb on - strand at 337.007 kb on - strand at 337.007 kb on - strand at 337.007 kb on - strand at 337.007 kb on - strand at 337.021 kb on + strand at 337.022 kb on - strand at 337.022 kb on - strand at 337.054 kb on + strand at 337.054 kb on + strand at 337.148 kb on + strand at 337.149 kb on - strand at 337.305 kb on + strand, within EX31_RS18760 at 337.305 kb on + strand, within EX31_RS18760 at 337.305 kb on + strand, within EX31_RS18760 at 337.305 kb on + strand, within EX31_RS18760 at 337.306 kb on - strand, within EX31_RS18760 at 337.306 kb on - strand, within EX31_RS18760 at 337.306 kb on - strand, within EX31_RS18760 at 337.306 kb on - strand, within EX31_RS18760 at 337.306 kb on - strand, within EX31_RS18760 at 337.306 kb on - strand, within EX31_RS18760 at 337.306 kb on - strand, within EX31_RS18760 at 337.306 kb on - strand, within EX31_RS18760 at 337.306 kb on - strand, within EX31_RS18760 at 337.332 kb on + strand, within EX31_RS18760 at 337.333 kb on - strand, within EX31_RS18760 at 337.333 kb on - strand, within EX31_RS18760 at 337.338 kb on + strand, within EX31_RS18760 at 337.339 kb on - strand, within EX31_RS18760 at 337.392 kb on - strand at 337.412 kb on + strand at 337.412 kb on + strand at 337.412 kb on + strand at 337.412 kb on + strand at 337.412 kb on + strand at 337.412 kb on + strand at 337.412 kb on + strand at 337.413 kb on - strand at 337.413 kb on - strand at 337.413 kb on - strand at 337.413 kb on - strand at 337.413 kb on - strand at 337.413 kb on - strand at 337.413 kb on - strand at 337.413 kb on - strand at 337.423 kb on + strand at 337.423 kb on + strand at 337.423 kb on + strand at 337.423 kb on + strand at 337.423 kb on + strand at 337.424 kb on - strand at 337.424 kb on - strand at 337.424 kb on - strand at 337.424 kb on - strand at 337.449 kb on + strand at 337.450 kb on - strand at 337.453 kb on + strand at 337.453 kb on + strand at 337.453 kb on + strand at 337.453 kb on + strand at 337.453 kb on + strand at 337.453 kb on + strand at 337.453 kb on + strand at 337.453 kb on + strand at 337.453 kb on + strand at 337.453 kb on + strand at 337.453 kb on + strand at 337.454 kb on - strand at 337.454 kb on - strand at 337.454 kb on - strand at 337.454 kb on - strand at 337.454 kb on - strand at 337.454 kb on - strand at 337.454 kb on - strand at 337.454 kb on - strand at 337.454 kb on - strand at 337.455 kb on + strand at 337.455 kb on + strand at 337.456 kb on - strand at 337.456 kb on - strand at 337.458 kb on + strand at 337.458 kb on + strand at 337.458 kb on + strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.467 kb on + strand at 337.468 kb on - strand at 337.563 kb on + strand at 337.563 kb on + strand at 337.563 kb on + strand at 337.564 kb on - strand at 337.564 kb on - strand at 337.564 kb on - strand at 337.564 kb on - strand at 337.564 kb on - strand at 337.564 kb on - strand at 337.564 kb on - strand at 337.564 kb on - strand at 337.566 kb on + strand at 337.566 kb on + strand at 337.567 kb on - strand at 337.567 kb on - strand at 337.567 kb on - strand at 337.607 kb on - strand at 337.690 kb on + strand at 337.691 kb on - strand at 337.714 kb on + strand at 337.814 kb on - strand, within EX31_RS18765 at 337.832 kb on + strand, within EX31_RS18765 at 337.832 kb on + strand, within EX31_RS18765 at 337.839 kb on + strand, within EX31_RS18765 at 337.840 kb on - strand, within EX31_RS18765 at 337.840 kb on - strand, within EX31_RS18765 at 337.983 kb on + strand, within EX31_RS18765 at 337.983 kb on + strand, within EX31_RS18765 at 337.983 kb on + strand, within EX31_RS18765 at 337.983 kb on + strand, within EX31_RS18765 at 337.984 kb on - strand, within EX31_RS18765 at 337.984 kb on - strand, within EX31_RS18765 at 337.984 kb on - strand, within EX31_RS18765 at 338.022 kb on + strand, within EX31_RS18765 at 338.023 kb on - strand, within EX31_RS18765 at 338.023 kb on - strand, within EX31_RS18765 at 338.080 kb on + strand, within EX31_RS18765 at 338.112 kb on + strand, within EX31_RS18765 at 338.112 kb on + strand, within EX31_RS18765 at 338.112 kb on + strand, within EX31_RS18765 at 338.113 kb on - strand, within EX31_RS18765 at 338.113 kb on - strand, within EX31_RS18765 at 338.113 kb on - strand, within EX31_RS18765 at 338.196 kb on + strand, within EX31_RS18765 at 338.255 kb on + strand, within EX31_RS18765 at 338.255 kb on + strand, within EX31_RS18765 at 338.256 kb on - strand, within EX31_RS18765 at 338.256 kb on - strand, within EX31_RS18765 at 338.305 kb on + strand, within EX31_RS18765 at 338.306 kb on - strand, within EX31_RS18765 at 338.320 kb on - strand, within EX31_RS18765 at 338.429 kb on + strand, within EX31_RS18765 at 338.430 kb on - strand, within EX31_RS18765 at 338.576 kb on + strand, within EX31_RS18765 at 338.576 kb on + strand, within EX31_RS18765 at 338.577 kb on - strand, within EX31_RS18765 at 338.596 kb on + strand, within EX31_RS18765 at 338.597 kb on - strand, within EX31_RS18765 at 338.597 kb on - strand, within EX31_RS18765 at 338.770 kb on - strand at 338.801 kb on - strand at 338.864 kb on - strand at 338.886 kb on + strand at 338.886 kb on + strand at 338.887 kb on - strand at 338.929 kb on + strand at 338.929 kb on + strand at 338.930 kb on - strand at 338.930 kb on - strand at 338.930 kb on - strand at 338.930 kb on - strand at 338.931 kb on + strand at 338.932 kb on - strand at 339.041 kb on - strand, within EX31_RS18770 at 339.063 kb on + strand, within EX31_RS18770 at 339.064 kb on - strand, within EX31_RS18770 at 339.391 kb on + strand, within EX31_RS18770 at 339.391 kb on + strand, within EX31_RS18770 at 339.392 kb on - strand, within EX31_RS18770 at 339.482 kb on + strand, within EX31_RS18770 at 339.504 kb on - strand, within EX31_RS18770 at 339.702 kb on - strand at 339.704 kb on + strand at 339.704 kb on + strand at 339.705 kb on - strand at 339.705 kb on - strand at 339.705 kb on - strand at 339.705 kb on - strand at 339.705 kb on - strand at 339.713 kb on + strand at 339.714 kb on - strand at 339.729 kb on + strand at 339.730 kb on - strand at 339.730 kb on - strand at 339.764 kb on + strand at 339.764 kb on + strand at 339.764 kb on + strand at 339.764 kb on + strand at 339.764 kb on + strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.765 kb on - strand at 339.772 kb on + strand at 339.772 kb on + strand at 339.772 kb on + strand at 339.773 kb on - strand at 339.773 kb on - strand at 339.773 kb on - strand at 339.773 kb on - strand at 339.773 kb on - strand at 339.773 kb on - strand at 339.773 kb on - strand at 339.773 kb on - strand at 339.773 kb on - strand at 339.773 kb on - strand at 339.833 kb on - strand at 339.833 kb on - strand at 339.833 kb on - strand at 339.856 kb on + strand at 339.856 kb on + strand at 339.857 kb on - strand at 339.857 kb on - strand at 339.865 kb on + strand at 339.866 kb on - strand at 339.866 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 336,671 - EX31_RS18755 0.86 -0.3 336,671 - EX31_RS18755 0.86 -0.7 336,671 - EX31_RS18755 0.86 -0.5 336,718 + EX31_RS18755 0.87 +0.3 336,718 + EX31_RS18755 0.87 -2.3 336,719 - EX31_RS18755 0.87 +1.0 336,719 - EX31_RS18755 0.87 +0.2 336,719 - EX31_RS18755 0.87 +0.6 336,724 + EX31_RS18755 0.88 -1.0 336,725 - EX31_RS18755 0.88 +0.4 336,815 + -0.5 336,860 - -0.7 336,875 + -0.8 336,875 + -0.2 336,903 + +0.5 336,930 + +0.6 336,930 + +0.6 336,931 - -0.3 336,931 - +0.3 336,953 - +0.3 336,997 - -0.8 336,997 - -0.3 337,006 + +0.3 337,006 + +0.9 337,006 + +0.3 337,006 + +0.8 337,006 + -0.6 337,006 + -0.7 337,006 + +0.1 337,006 + -1.7 337,006 + +0.5 337,006 + -0.4 337,006 + +0.5 337,007 - +0.8 337,007 - +0.0 337,007 - -0.0 337,007 - +0.0 337,007 - +1.0 337,007 - -0.3 337,021 + +0.6 337,022 - -0.6 337,022 - -0.7 337,054 + +0.5 337,054 + +0.2 337,148 + +0.5 337,149 - -0.9 337,305 + EX31_RS18760 0.60 -0.0 337,305 + EX31_RS18760 0.60 +0.8 337,305 + EX31_RS18760 0.60 -0.0 337,305 + EX31_RS18760 0.60 -0.6 337,306 - EX31_RS18760 0.61 +0.2 337,306 - EX31_RS18760 0.61 +1.0 337,306 - EX31_RS18760 0.61 -0.0 337,306 - EX31_RS18760 0.61 +0.9 337,306 - EX31_RS18760 0.61 +0.9 337,306 - EX31_RS18760 0.61 +0.1 337,306 - EX31_RS18760 0.61 +0.5 337,306 - EX31_RS18760 0.61 -0.5 337,306 - EX31_RS18760 0.61 -1.1 337,332 + EX31_RS18760 0.72 +0.7 337,333 - EX31_RS18760 0.72 -0.4 337,333 - EX31_RS18760 0.72 +0.5 337,338 + EX31_RS18760 0.74 +0.2 337,339 - EX31_RS18760 0.75 +0.2 337,392 - +0.4 337,412 + +0.8 337,412 + +0.2 337,412 + -0.3 337,412 + +0.2 337,412 + +0.4 337,412 + -0.5 337,412 + -0.2 337,413 - -0.7 337,413 - -0.6 337,413 - +0.1 337,413 - +0.3 337,413 - +0.2 337,413 - -0.5 337,413 - +0.1 337,413 - +0.5 337,423 + -0.3 337,423 + -0.7 337,423 + +0.5 337,423 + -1.0 337,423 + -1.4 337,424 - -0.2 337,424 - +0.7 337,424 - +0.1 337,424 - -1.8 337,449 + -0.9 337,450 - +0.9 337,453 + +0.6 337,453 + -1.7 337,453 + -1.0 337,453 + +0.8 337,453 + +0.3 337,453 + +0.6 337,453 + -0.4 337,453 + +0.1 337,453 + -0.4 337,453 + +0.5 337,453 + +0.1 337,454 - -0.8 337,454 - -0.7 337,454 - +0.7 337,454 - +0.3 337,454 - +0.3 337,454 - +0.7 337,454 - -0.1 337,454 - +1.2 337,454 - +0.2 337,455 + -0.3 337,455 + -0.6 337,456 - +1.1 337,456 - +1.0 337,458 + +2.2 337,458 + -0.0 337,458 + +1.3 337,459 - +0.2 337,459 - +0.7 337,467 + -0.8 337,468 - -0.8 337,563 + -0.0 337,563 + +0.7 337,563 + -0.3 337,564 - +0.9 337,564 - +1.4 337,564 - +0.4 337,564 - -0.5 337,564 - -0.2 337,564 - +0.0 337,564 - +0.9 337,564 - +0.1 337,566 + -0.8 337,566 + -0.5 337,567 - +0.7 337,567 - +0.4 337,567 - +0.9 337,607 - +0.9 337,690 + +0.6 337,691 - -0.7 337,714 + +0.7 337,814 - EX31_RS18765 0.14 -0.8 337,832 + EX31_RS18765 0.15 +0.2 337,832 + EX31_RS18765 0.15 +1.8 337,839 + EX31_RS18765 0.16 +1.0 337,840 - EX31_RS18765 0.16 -0.3 337,840 - EX31_RS18765 0.16 +0.2 337,983 + EX31_RS18765 0.27 -0.1 337,983 + EX31_RS18765 0.27 +1.7 337,983 + EX31_RS18765 0.27 -0.7 337,983 + EX31_RS18765 0.27 -0.1 337,984 - EX31_RS18765 0.27 +1.7 337,984 - EX31_RS18765 0.27 -0.5 337,984 - EX31_RS18765 0.27 +1.4 338,022 + EX31_RS18765 0.31 +0.4 338,023 - EX31_RS18765 0.31 +0.7 338,023 - EX31_RS18765 0.31 +0.6 338,080 + EX31_RS18765 0.35 +0.5 338,112 + EX31_RS18765 0.38 +0.5 338,112 + EX31_RS18765 0.38 +0.1 338,112 + EX31_RS18765 0.38 -0.1 338,113 - EX31_RS18765 0.38 +1.4 338,113 - EX31_RS18765 0.38 -0.8 338,113 - EX31_RS18765 0.38 -0.3 338,196 + EX31_RS18765 0.45 +0.6 338,255 + EX31_RS18765 0.49 +1.0 338,255 + EX31_RS18765 0.49 +0.4 338,256 - EX31_RS18765 0.49 +1.6 338,256 - EX31_RS18765 0.49 -2.1 338,305 + EX31_RS18765 0.53 +0.7 338,306 - EX31_RS18765 0.53 +1.3 338,320 - EX31_RS18765 0.55 +1.2 338,429 + EX31_RS18765 0.63 +0.2 338,430 - EX31_RS18765 0.63 +0.5 338,576 + EX31_RS18765 0.75 +0.2 338,576 + EX31_RS18765 0.75 -0.1 338,577 - EX31_RS18765 0.75 -0.4 338,596 + EX31_RS18765 0.77 +0.2 338,597 - EX31_RS18765 0.77 -0.5 338,597 - EX31_RS18765 0.77 +0.7 338,770 - +0.8 338,801 - +0.1 338,864 - +0.3 338,886 + +0.1 338,886 + +0.7 338,887 - +1.0 338,929 + +1.5 338,929 + +0.9 338,930 - +0.1 338,930 - +0.3 338,930 - -1.0 338,930 - +0.7 338,931 + -0.6 338,932 - +0.5 339,041 - EX31_RS18770 0.20 +0.0 339,063 + EX31_RS18770 0.23 +0.5 339,064 - EX31_RS18770 0.23 +2.1 339,391 + EX31_RS18770 0.66 +0.0 339,391 + EX31_RS18770 0.66 +0.6 339,392 - EX31_RS18770 0.66 +0.9 339,482 + EX31_RS18770 0.78 +1.0 339,504 - EX31_RS18770 0.81 +0.2 339,702 - +0.2 339,704 + -1.1 339,704 + -0.8 339,705 - -2.8 339,705 - -0.9 339,705 - +1.3 339,705 - -0.3 339,705 - -0.1 339,713 + -0.7 339,714 - +0.4 339,729 + +1.6 339,730 - +0.4 339,730 - -0.9 339,764 + +0.9 339,764 + -0.4 339,764 + -0.8 339,764 + +0.8 339,764 + -0.2 339,765 - -0.6 339,765 - +0.2 339,765 - -0.4 339,765 - +1.0 339,765 - -1.0 339,765 - -1.5 339,765 - -0.2 339,765 - -0.5 339,765 - +0.3 339,765 - -0.2 339,765 - +0.0 339,765 - +1.3 339,765 - +0.8 339,765 - -0.1 339,765 - -0.8 339,765 - -0.2 339,765 - -1.6 339,772 + -1.8 339,772 + -1.0 339,772 + -0.1 339,773 - +0.1 339,773 - +0.1 339,773 - -0.5 339,773 - +0.4 339,773 - -2.4 339,773 - +0.2 339,773 - -0.8 339,773 - -0.7 339,773 - -1.8 339,773 - +0.7 339,833 - +1.5 339,833 - -0.0 339,833 - +0.9 339,856 + -1.0 339,856 + -1.1 339,857 - -0.8 339,857 - +0.1 339,865 + +0.6 339,866 - +0.9 339,866 - -1.3
Or see this region's nucleotide sequence