Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18135 and EX31_RS18140 are separated by 302 nucleotides EX31_RS18140 and EX31_RS18145 are separated by 241 nucleotides
EX31_RS18135: EX31_RS18135 - asparagine--tRNA ligase, at 191,145 to 192,545
_RS18135
EX31_RS18140: EX31_RS18140 - porin OmpC, at 192,848 to 193,957
_RS18140
EX31_RS18145: EX31_RS18145 - aspartate/tyrosine/aromatic aminotransferase, at 194,199 to 195,389
_RS18145
Position (kb) 192
193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 192.543 kb on + strand at 192.543 kb on + strand at 192.551 kb on + strand at 192.571 kb on + strand at 192.572 kb on - strand at 192.572 kb on - strand at 192.572 kb on - strand at 192.572 kb on - strand at 192.623 kb on + strand at 192.741 kb on + strand at 192.742 kb on - strand at 192.776 kb on + strand at 192.780 kb on + strand at 192.796 kb on + strand at 192.800 kb on + strand at 192.840 kb on + strand at 192.840 kb on + strand at 192.840 kb on + strand at 192.840 kb on + strand at 192.840 kb on + strand at 192.840 kb on + strand at 192.840 kb on + strand at 192.841 kb on - strand at 192.843 kb on + strand at 192.843 kb on + strand at 192.843 kb on + strand at 192.843 kb on + strand at 192.843 kb on + strand at 192.843 kb on + strand at 192.844 kb on - strand at 192.873 kb on + strand at 192.888 kb on + strand at 192.904 kb on + strand at 192.904 kb on + strand at 192.904 kb on + strand at 192.905 kb on - strand at 192.920 kb on + strand at 192.920 kb on + strand at 192.920 kb on + strand at 192.920 kb on + strand at 192.920 kb on + strand at 192.920 kb on + strand at 192.921 kb on - strand at 192.922 kb on + strand at 192.922 kb on + strand at 192.922 kb on + strand at 193.013 kb on + strand, within EX31_RS18140 at 193.013 kb on + strand, within EX31_RS18140 at 193.013 kb on + strand, within EX31_RS18140 at 193.013 kb on + strand, within EX31_RS18140 at 193.013 kb on + strand, within EX31_RS18140 at 193.013 kb on + strand, within EX31_RS18140 at 193.013 kb on + strand, within EX31_RS18140 at 193.013 kb on + strand, within EX31_RS18140 at 193.013 kb on + strand, within EX31_RS18140 at 193.048 kb on + strand, within EX31_RS18140 at 193.048 kb on + strand, within EX31_RS18140 at 193.048 kb on + strand, within EX31_RS18140 at 193.082 kb on + strand, within EX31_RS18140 at 193.192 kb on + strand, within EX31_RS18140 at 193.192 kb on + strand, within EX31_RS18140 at 193.196 kb on + strand, within EX31_RS18140 at 193.203 kb on + strand, within EX31_RS18140 at 193.203 kb on + strand, within EX31_RS18140 at 193.208 kb on + strand, within EX31_RS18140 at 193.215 kb on + strand, within EX31_RS18140 at 193.215 kb on + strand, within EX31_RS18140 at 193.215 kb on + strand, within EX31_RS18140 at 193.215 kb on + strand, within EX31_RS18140 at 193.215 kb on + strand, within EX31_RS18140 at 193.215 kb on + strand, within EX31_RS18140 at 193.215 kb on + strand, within EX31_RS18140 at 193.215 kb on + strand, within EX31_RS18140 at 193.215 kb on + strand, within EX31_RS18140 at 193.215 kb on + strand, within EX31_RS18140 at 193.215 kb on + strand, within EX31_RS18140 at 193.223 kb on + strand, within EX31_RS18140 at 193.297 kb on + strand, within EX31_RS18140 at 193.297 kb on + strand, within EX31_RS18140 at 193.297 kb on + strand, within EX31_RS18140 at 193.313 kb on + strand, within EX31_RS18140 at 193.318 kb on + strand, within EX31_RS18140 at 193.318 kb on + strand, within EX31_RS18140 at 193.362 kb on + strand, within EX31_RS18140 at 193.362 kb on + strand, within EX31_RS18140 at 193.362 kb on + strand, within EX31_RS18140 at 193.362 kb on + strand, within EX31_RS18140 at 193.362 kb on + strand, within EX31_RS18140 at 193.362 kb on + strand, within EX31_RS18140 at 193.362 kb on + strand, within EX31_RS18140 at 193.435 kb on + strand, within EX31_RS18140 at 193.435 kb on + strand, within EX31_RS18140 at 193.435 kb on + strand, within EX31_RS18140 at 193.436 kb on - strand, within EX31_RS18140 at 193.448 kb on + strand, within EX31_RS18140 at 193.471 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.487 kb on + strand, within EX31_RS18140 at 193.488 kb on - strand, within EX31_RS18140 at 193.498 kb on + strand, within EX31_RS18140 at 193.504 kb on + strand, within EX31_RS18140 at 193.504 kb on + strand, within EX31_RS18140 at 193.510 kb on + strand, within EX31_RS18140 at 193.510 kb on + strand, within EX31_RS18140 at 193.568 kb on + strand, within EX31_RS18140 at 193.568 kb on + strand, within EX31_RS18140 at 193.576 kb on + strand, within EX31_RS18140 at 193.576 kb on + strand, within EX31_RS18140 at 193.586 kb on + strand, within EX31_RS18140 at 193.601 kb on + strand, within EX31_RS18140 at 193.601 kb on + strand, within EX31_RS18140 at 193.615 kb on + strand, within EX31_RS18140 at 193.615 kb on + strand, within EX31_RS18140 at 193.615 kb on + strand, within EX31_RS18140 at 193.615 kb on + strand, within EX31_RS18140 at 193.616 kb on - strand, within EX31_RS18140 at 193.714 kb on + strand, within EX31_RS18140 at 193.714 kb on + strand, within EX31_RS18140 at 193.714 kb on + strand, within EX31_RS18140 at 193.714 kb on + strand, within EX31_RS18140 at 193.714 kb on + strand, within EX31_RS18140 at 193.714 kb on + strand, within EX31_RS18140 at 193.714 kb on + strand, within EX31_RS18140 at 193.721 kb on + strand, within EX31_RS18140 at 193.721 kb on + strand, within EX31_RS18140 at 193.732 kb on + strand, within EX31_RS18140 at 193.732 kb on + strand, within EX31_RS18140 at 193.738 kb on + strand, within EX31_RS18140 at 193.771 kb on + strand, within EX31_RS18140 at 193.771 kb on + strand, within EX31_RS18140 at 193.771 kb on + strand, within EX31_RS18140 at 193.775 kb on + strand, within EX31_RS18140 at 193.801 kb on + strand, within EX31_RS18140 at 193.801 kb on + strand, within EX31_RS18140 at 193.801 kb on + strand, within EX31_RS18140 at 193.805 kb on + strand, within EX31_RS18140 at 193.805 kb on + strand, within EX31_RS18140 at 193.809 kb on + strand, within EX31_RS18140 at 193.819 kb on + strand, within EX31_RS18140 at 193.823 kb on + strand, within EX31_RS18140 at 193.823 kb on + strand, within EX31_RS18140 at 193.823 kb on + strand, within EX31_RS18140 at 193.823 kb on + strand, within EX31_RS18140 at 193.823 kb on + strand, within EX31_RS18140 at 193.823 kb on + strand, within EX31_RS18140 at 193.824 kb on - strand, within EX31_RS18140 at 193.824 kb on - strand, within EX31_RS18140 at 193.826 kb on + strand, within EX31_RS18140 at 193.826 kb on + strand, within EX31_RS18140 at 193.829 kb on + strand, within EX31_RS18140 at 193.829 kb on + strand, within EX31_RS18140 at 193.829 kb on + strand, within EX31_RS18140 at 193.849 kb on + strand at 193.853 kb on + strand at 193.853 kb on + strand at 193.853 kb on + strand at 193.853 kb on + strand at 193.853 kb on + strand at 193.853 kb on + strand at 193.853 kb on + strand at 193.853 kb on + strand at 193.853 kb on + strand at 193.853 kb on + strand at 193.853 kb on + strand at 193.853 kb on + strand at 193.853 kb on + strand at 193.854 kb on - strand at 193.862 kb on + strand at 193.946 kb on + strand at 193.946 kb on + strand at 193.955 kb on + strand at 193.955 kb on + strand at 193.955 kb on + strand at 193.955 kb on + strand at 193.955 kb on + strand at 193.955 kb on + strand at 193.956 kb on - strand at 193.958 kb on + strand at 193.958 kb on + strand at 193.958 kb on + strand at 193.965 kb on + strand at 193.965 kb on + strand at 193.965 kb on + strand at 193.965 kb on + strand at 193.965 kb on + strand at 193.965 kb on + strand at 193.965 kb on + strand at 193.977 kb on + strand at 193.977 kb on + strand at 193.977 kb on + strand at 194.199 kb on + strand at 194.384 kb on + strand, within EX31_RS18145 at 194.391 kb on + strand, within EX31_RS18145 at 194.429 kb on + strand, within EX31_RS18145 at 194.430 kb on - strand, within EX31_RS18145 at 194.430 kb on - strand, within EX31_RS18145 at 194.465 kb on + strand, within EX31_RS18145 at 194.643 kb on + strand, within EX31_RS18145 at 194.643 kb on + strand, within EX31_RS18145 at 194.643 kb on + strand, within EX31_RS18145 at 194.646 kb on + strand, within EX31_RS18145 at 194.947 kb on + strand, within EX31_RS18145 at 194.949 kb on + strand, within EX31_RS18145 at 194.949 kb on + strand, within EX31_RS18145 at 194.950 kb on - strand, within EX31_RS18145 at 194.950 kb on - strand, within EX31_RS18145 at 194.950 kb on - strand, within EX31_RS18145 at 194.950 kb on - strand, within EX31_RS18145
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 192,543 + -0.6 192,543 + -0.2 192,551 + -0.1 192,571 + -0.5 192,572 - +0.1 192,572 - +0.6 192,572 - +0.6 192,572 - +1.0 192,623 + -0.2 192,741 + +0.1 192,742 - +0.0 192,776 + +0.6 192,780 + +0.5 192,796 + +0.4 192,800 + -0.4 192,840 + -0.1 192,840 + +0.5 192,840 + -2.8 192,840 + +0.4 192,840 + +0.2 192,840 + +0.2 192,840 + -0.3 192,841 - +0.7 192,843 + -0.0 192,843 + -0.3 192,843 + +0.2 192,843 + -0.3 192,843 + +0.7 192,843 + -0.1 192,844 - +0.2 192,873 + -0.2 192,888 + -0.0 192,904 + +1.4 192,904 + -0.2 192,904 + +0.8 192,905 - -1.0 192,920 + +0.6 192,920 + +0.4 192,920 + +0.5 192,920 + +0.1 192,920 + +0.7 192,920 + +0.3 192,921 - -0.2 192,922 + +1.0 192,922 + +0.3 192,922 + +0.1 193,013 + EX31_RS18140 0.15 +0.5 193,013 + EX31_RS18140 0.15 +0.4 193,013 + EX31_RS18140 0.15 -0.7 193,013 + EX31_RS18140 0.15 +0.8 193,013 + EX31_RS18140 0.15 +0.5 193,013 + EX31_RS18140 0.15 -0.5 193,013 + EX31_RS18140 0.15 +0.4 193,013 + EX31_RS18140 0.15 +0.0 193,013 + EX31_RS18140 0.15 +0.9 193,048 + EX31_RS18140 0.18 +0.6 193,048 + EX31_RS18140 0.18 +0.2 193,048 + EX31_RS18140 0.18 +0.5 193,082 + EX31_RS18140 0.21 -0.1 193,192 + EX31_RS18140 0.31 +0.7 193,192 + EX31_RS18140 0.31 +0.2 193,196 + EX31_RS18140 0.31 +0.4 193,203 + EX31_RS18140 0.32 -0.5 193,203 + EX31_RS18140 0.32 +1.1 193,208 + EX31_RS18140 0.32 -0.4 193,215 + EX31_RS18140 0.33 +0.6 193,215 + EX31_RS18140 0.33 +0.4 193,215 + EX31_RS18140 0.33 -0.4 193,215 + EX31_RS18140 0.33 +1.3 193,215 + EX31_RS18140 0.33 +0.5 193,215 + EX31_RS18140 0.33 +1.2 193,215 + EX31_RS18140 0.33 +0.4 193,215 + EX31_RS18140 0.33 +0.5 193,215 + EX31_RS18140 0.33 +0.4 193,215 + EX31_RS18140 0.33 +0.7 193,215 + EX31_RS18140 0.33 +0.8 193,223 + EX31_RS18140 0.34 +1.3 193,297 + EX31_RS18140 0.40 +0.2 193,297 + EX31_RS18140 0.40 +0.2 193,297 + EX31_RS18140 0.40 +0.8 193,313 + EX31_RS18140 0.42 +0.6 193,318 + EX31_RS18140 0.42 +0.3 193,318 + EX31_RS18140 0.42 +0.8 193,362 + EX31_RS18140 0.46 -0.1 193,362 + EX31_RS18140 0.46 -0.1 193,362 + EX31_RS18140 0.46 +0.2 193,362 + EX31_RS18140 0.46 +0.1 193,362 + EX31_RS18140 0.46 +0.6 193,362 + EX31_RS18140 0.46 -0.4 193,362 + EX31_RS18140 0.46 +0.5 193,435 + EX31_RS18140 0.53 -0.1 193,435 + EX31_RS18140 0.53 +0.1 193,435 + EX31_RS18140 0.53 +0.9 193,436 - EX31_RS18140 0.53 +0.8 193,448 + EX31_RS18140 0.54 -0.0 193,471 + EX31_RS18140 0.56 +0.7 193,487 + EX31_RS18140 0.58 +0.7 193,487 + EX31_RS18140 0.58 +0.5 193,487 + EX31_RS18140 0.58 +0.1 193,487 + EX31_RS18140 0.58 -0.2 193,487 + EX31_RS18140 0.58 +0.3 193,487 + EX31_RS18140 0.58 -1.0 193,487 + EX31_RS18140 0.58 +0.7 193,487 + EX31_RS18140 0.58 +0.2 193,487 + EX31_RS18140 0.58 +0.0 193,487 + EX31_RS18140 0.58 +0.3 193,487 + EX31_RS18140 0.58 +0.3 193,487 + EX31_RS18140 0.58 +0.0 193,487 + EX31_RS18140 0.58 +0.7 193,487 + EX31_RS18140 0.58 -0.3 193,487 + EX31_RS18140 0.58 +0.0 193,487 + EX31_RS18140 0.58 -0.1 193,488 - EX31_RS18140 0.58 -0.1 193,498 + EX31_RS18140 0.59 +0.6 193,504 + EX31_RS18140 0.59 +0.4 193,504 + EX31_RS18140 0.59 +0.4 193,510 + EX31_RS18140 0.60 +0.3 193,510 + EX31_RS18140 0.60 +0.2 193,568 + EX31_RS18140 0.65 +0.1 193,568 + EX31_RS18140 0.65 +0.4 193,576 + EX31_RS18140 0.66 +0.5 193,576 + EX31_RS18140 0.66 +0.3 193,586 + EX31_RS18140 0.66 +0.4 193,601 + EX31_RS18140 0.68 -0.3 193,601 + EX31_RS18140 0.68 -0.0 193,615 + EX31_RS18140 0.69 +0.2 193,615 + EX31_RS18140 0.69 -0.3 193,615 + EX31_RS18140 0.69 +0.4 193,615 + EX31_RS18140 0.69 +0.4 193,616 - EX31_RS18140 0.69 +0.8 193,714 + EX31_RS18140 0.78 -0.3 193,714 + EX31_RS18140 0.78 +0.3 193,714 + EX31_RS18140 0.78 +0.4 193,714 + EX31_RS18140 0.78 +0.2 193,714 + EX31_RS18140 0.78 +1.1 193,714 + EX31_RS18140 0.78 -0.1 193,714 + EX31_RS18140 0.78 +0.4 193,721 + EX31_RS18140 0.79 +0.4 193,721 + EX31_RS18140 0.79 +0.5 193,732 + EX31_RS18140 0.80 +1.4 193,732 + EX31_RS18140 0.80 +0.4 193,738 + EX31_RS18140 0.80 -0.1 193,771 + EX31_RS18140 0.83 -0.4 193,771 + EX31_RS18140 0.83 +0.2 193,771 + EX31_RS18140 0.83 +0.4 193,775 + EX31_RS18140 0.84 -0.0 193,801 + EX31_RS18140 0.86 -0.1 193,801 + EX31_RS18140 0.86 -0.3 193,801 + EX31_RS18140 0.86 +0.9 193,805 + EX31_RS18140 0.86 +1.0 193,805 + EX31_RS18140 0.86 +0.1 193,809 + EX31_RS18140 0.87 +0.5 193,819 + EX31_RS18140 0.87 +0.6 193,823 + EX31_RS18140 0.88 +0.8 193,823 + EX31_RS18140 0.88 +0.5 193,823 + EX31_RS18140 0.88 +1.4 193,823 + EX31_RS18140 0.88 +0.1 193,823 + EX31_RS18140 0.88 +1.1 193,823 + EX31_RS18140 0.88 +0.3 193,824 - EX31_RS18140 0.88 +1.0 193,824 - EX31_RS18140 0.88 +0.8 193,826 + EX31_RS18140 0.88 +0.3 193,826 + EX31_RS18140 0.88 -1.1 193,829 + EX31_RS18140 0.88 -0.6 193,829 + EX31_RS18140 0.88 +0.3 193,829 + EX31_RS18140 0.88 +0.7 193,849 + -0.5 193,853 + +0.6 193,853 + +0.4 193,853 + -0.4 193,853 + +0.3 193,853 + +0.5 193,853 + -0.1 193,853 + +1.7 193,853 + +1.1 193,853 + +0.5 193,853 + +0.6 193,853 + +0.8 193,853 + +0.4 193,853 + +0.8 193,854 - -2.3 193,862 + +0.4 193,946 + +1.2 193,946 + -0.8 193,955 + +0.6 193,955 + +0.3 193,955 + +0.7 193,955 + +0.6 193,955 + +0.5 193,955 + +0.5 193,956 - -1.7 193,958 + +0.9 193,958 + +0.2 193,958 + +1.3 193,965 + +0.5 193,965 + +0.0 193,965 + +0.1 193,965 + -0.8 193,965 + -0.3 193,965 + +1.1 193,965 + +0.7 193,977 + +1.0 193,977 + +0.4 193,977 + +0.1 194,199 + +0.3 194,384 + EX31_RS18145 0.16 +0.1 194,391 + EX31_RS18145 0.16 +0.2 194,429 + EX31_RS18145 0.19 +0.6 194,430 - EX31_RS18145 0.19 -1.3 194,430 - EX31_RS18145 0.19 +0.6 194,465 + EX31_RS18145 0.22 -0.2 194,643 + EX31_RS18145 0.37 +0.1 194,643 + EX31_RS18145 0.37 +0.1 194,643 + EX31_RS18145 0.37 -1.5 194,646 + EX31_RS18145 0.38 +0.0 194,947 + EX31_RS18145 0.63 -0.2 194,949 + EX31_RS18145 0.63 +0.5 194,949 + EX31_RS18145 0.63 +0.6 194,950 - EX31_RS18145 0.63 +0.2 194,950 - EX31_RS18145 0.63 -0.1 194,950 - EX31_RS18145 0.63 -0.1 194,950 - EX31_RS18145 0.63 +0.1
Or see this region's nucleotide sequence