Strain Fitness in Rahnella sp. WP5 around EX31_RS15690

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15680 and EX31_RS15685 are separated by 89 nucleotidesEX31_RS15685 and EX31_RS15690 are separated by 232 nucleotidesEX31_RS15690 and EX31_RS15695 are separated by 220 nucleotides EX31_RS15680: EX31_RS15680 - envelope stress response membrane protein PspB, at 34,642 to 34,869 _RS15680 EX31_RS15685: EX31_RS15685 - phage shock protein PspA, at 34,959 to 35,630 _RS15685 EX31_RS15690: EX31_RS15690 - phage shock protein operon transcriptional activator, at 35,863 to 36,870 _RS15690 EX31_RS15695: EX31_RS15695 - GTP-binding protein, at 37,091 to 38,278 _RS15695 Position (kb) 35 36 37Strain fitness (log2 ratio) -2 -1 0 1 2at 34.880 kb on + strandat 34.881 kb on - strandat 34.881 kb on - strandat 34.881 kb on - strandat 34.890 kb on - strandat 34.890 kb on - strandat 34.890 kb on - strandat 34.890 kb on - strandat 34.890 kb on - strandat 34.893 kb on + strandat 34.894 kb on - strandat 34.960 kb on + strandat 34.961 kb on - strandat 34.961 kb on - strandat 34.961 kb on - strandat 35.100 kb on - strand, within EX31_RS15685at 35.208 kb on + strand, within EX31_RS15685at 35.209 kb on - strand, within EX31_RS15685at 35.209 kb on - strand, within EX31_RS15685at 35.209 kb on - strand, within EX31_RS15685at 35.209 kb on - strand, within EX31_RS15685at 35.209 kb on - strand, within EX31_RS15685at 35.299 kb on - strand, within EX31_RS15685at 35.720 kb on + strandat 35.721 kb on - strandat 35.722 kb on + strandat 35.755 kb on - strandat 35.796 kb on - strandat 35.950 kb on - strandat 36.013 kb on + strand, within EX31_RS15690at 36.013 kb on + strand, within EX31_RS15690at 36.013 kb on + strand, within EX31_RS15690at 36.014 kb on - strand, within EX31_RS15690at 36.014 kb on - strand, within EX31_RS15690at 36.173 kb on + strand, within EX31_RS15690at 36.173 kb on + strand, within EX31_RS15690at 36.174 kb on - strand, within EX31_RS15690at 36.174 kb on - strand, within EX31_RS15690at 36.238 kb on + strand, within EX31_RS15690at 36.317 kb on + strand, within EX31_RS15690at 36.496 kb on + strand, within EX31_RS15690at 36.496 kb on + strand, within EX31_RS15690at 36.609 kb on + strand, within EX31_RS15690at 36.610 kb on - strand, within EX31_RS15690at 36.689 kb on + strand, within EX31_RS15690at 36.774 kb on + strandat 36.775 kb on - strandat 36.802 kb on + strandat 36.803 kb on - strandat 36.803 kb on - strandat 36.803 kb on - strandat 36.803 kb on - strandat 36.803 kb on - strandat 36.869 kb on - strandat 36.906 kb on + strandat 36.906 kb on + strandat 36.906 kb on + strandat 36.935 kb on + strandat 36.935 kb on + strandat 36.936 kb on - strandat 36.936 kb on - strandat 36.936 kb on - strandat 37.011 kb on + strandat 37.055 kb on - strandat 37.060 kb on + strandat 37.065 kb on + strandat 37.077 kb on - strandat 37.093 kb on - strandat 37.199 kb on - strandat 37.199 kb on - strandat 37.237 kb on + strand, within EX31_RS15695at 37.267 kb on + strand, within EX31_RS15695at 37.428 kb on - strand, within EX31_RS15695at 37.428 kb on - strand, within EX31_RS15695at 37.428 kb on - strand, within EX31_RS15695at 37.464 kb on + strand, within EX31_RS15695at 37.501 kb on - strand, within EX31_RS15695at 37.609 kb on + strand, within EX31_RS15695at 37.609 kb on + strand, within EX31_RS15695at 37.609 kb on + strand, within EX31_RS15695at 37.610 kb on - strand, within EX31_RS15695at 37.610 kb on - strand, within EX31_RS15695at 37.610 kb on - strand, within EX31_RS15695at 37.610 kb on - strand, within EX31_RS15695at 37.613 kb on - strand, within EX31_RS15695at 37.613 kb on - strand, within EX31_RS15695at 37.613 kb on - strand, within EX31_RS15695at 37.655 kb on - strand, within EX31_RS15695at 37.655 kb on - strand, within EX31_RS15695at 37.760 kb on + strand, within EX31_RS15695at 37.790 kb on - strand, within EX31_RS15695at 37.859 kb on - strand, within EX31_RS15695at 37.859 kb on - strand, within EX31_RS15695

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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34,880 + -1.3
34,881 - +0.1
34,881 - -0.4
34,881 - -2.1
34,890 - -0.6
34,890 - -2.4
34,890 - -0.9
34,890 - +0.8
34,890 - -0.4
34,893 + +0.5
34,894 - +0.3
34,960 + -0.2
34,961 - -0.0
34,961 - -1.5
34,961 - -0.3
35,100 - EX31_RS15685 0.21 +0.1
35,208 + EX31_RS15685 0.37 +0.2
35,209 - EX31_RS15685 0.37 +0.1
35,209 - EX31_RS15685 0.37 -0.7
35,209 - EX31_RS15685 0.37 -0.0
35,209 - EX31_RS15685 0.37 -0.8
35,209 - EX31_RS15685 0.37 +0.4
35,299 - EX31_RS15685 0.51 +0.3
35,720 + -0.2
35,721 - +0.1
35,722 + +0.1
35,755 - -0.1
35,796 - +0.4
35,950 - -0.7
36,013 + EX31_RS15690 0.15 +1.0
36,013 + EX31_RS15690 0.15 +0.2
36,013 + EX31_RS15690 0.15 +0.5
36,014 - EX31_RS15690 0.15 -0.0
36,014 - EX31_RS15690 0.15 +0.1
36,173 + EX31_RS15690 0.31 +0.3
36,173 + EX31_RS15690 0.31 -0.1
36,174 - EX31_RS15690 0.31 +1.2
36,174 - EX31_RS15690 0.31 +1.2
36,238 + EX31_RS15690 0.37 +0.6
36,317 + EX31_RS15690 0.45 +0.8
36,496 + EX31_RS15690 0.63 +1.8
36,496 + EX31_RS15690 0.63 -0.6
36,609 + EX31_RS15690 0.74 +0.3
36,610 - EX31_RS15690 0.74 +0.5
36,689 + EX31_RS15690 0.82 -1.0
36,774 + -0.4
36,775 - -1.8
36,802 + +0.9
36,803 - -0.5
36,803 - -0.2
36,803 - -0.3
36,803 - -0.1
36,803 - -0.3
36,869 - +0.1
36,906 + -1.3
36,906 + +0.1
36,906 + -1.2
36,935 + -1.5
36,935 + +1.3
36,936 - +0.3
36,936 - +0.5
36,936 - +0.7
37,011 + +0.3
37,055 - +0.2
37,060 + -0.5
37,065 + -1.1
37,077 - +0.8
37,093 - -1.1
37,199 - -0.5
37,199 - +0.2
37,237 + EX31_RS15695 0.12 +2.1
37,267 + EX31_RS15695 0.15 -0.8
37,428 - EX31_RS15695 0.28 +0.0
37,428 - EX31_RS15695 0.28 +0.1
37,428 - EX31_RS15695 0.28 -0.5
37,464 + EX31_RS15695 0.31 +0.0
37,501 - EX31_RS15695 0.35 +0.6
37,609 + EX31_RS15695 0.44 +0.3
37,609 + EX31_RS15695 0.44 +0.6
37,609 + EX31_RS15695 0.44 +0.3
37,610 - EX31_RS15695 0.44 +1.2
37,610 - EX31_RS15695 0.44 +0.3
37,610 - EX31_RS15695 0.44 +0.4
37,610 - EX31_RS15695 0.44 +0.5
37,613 - EX31_RS15695 0.44 -0.7
37,613 - EX31_RS15695 0.44 +0.1
37,613 - EX31_RS15695 0.44 -0.4
37,655 - EX31_RS15695 0.47 +0.1
37,655 - EX31_RS15695 0.47 -1.2
37,760 + EX31_RS15695 0.56 +1.1
37,790 - EX31_RS15695 0.59 -0.2
37,859 - EX31_RS15695 0.65 -0.1
37,859 - EX31_RS15695 0.65 -1.3

Or see this region's nucleotide sequence