Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13635 and EX31_RS13640 overlap by 11 nucleotides EX31_RS13640 and EX31_RS13645 are separated by 174 nucleotides EX31_RS13645 and EX31_RS13650 are separated by 23 nucleotides
EX31_RS13635: EX31_RS13635 - AzlC family ABC transporter permease, at 164,646 to 165,407
_RS13635
EX31_RS13640: EX31_RS13640 - L-valine transporter subunit YgaH, at 165,397 to 165,735
_RS13640
EX31_RS13645: EX31_RS13645 - transcriptional repressor MprA, at 165,910 to 166,431
_RS13645
EX31_RS13650: EX31_RS13650 - efflux transporter outer membrane subunit, at 166,455 to 167,909
_RS13650
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 164.932 kb on - strand, within EX31_RS13635 at 164.932 kb on - strand, within EX31_RS13635 at 165.143 kb on + strand, within EX31_RS13635 at 165.191 kb on + strand, within EX31_RS13635 at 165.191 kb on + strand, within EX31_RS13635 at 165.191 kb on + strand, within EX31_RS13635 at 165.191 kb on + strand, within EX31_RS13635 at 165.191 kb on + strand, within EX31_RS13635 at 165.191 kb on + strand, within EX31_RS13635 at 165.191 kb on + strand, within EX31_RS13635 at 165.192 kb on - strand, within EX31_RS13635 at 165.192 kb on - strand, within EX31_RS13635 at 165.192 kb on - strand, within EX31_RS13635 at 165.192 kb on - strand, within EX31_RS13635 at 165.192 kb on - strand, within EX31_RS13635 at 165.192 kb on - strand, within EX31_RS13635 at 165.192 kb on - strand, within EX31_RS13635 at 165.234 kb on - strand, within EX31_RS13635 at 165.234 kb on - strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.251 kb on - strand, within EX31_RS13635 at 165.251 kb on - strand, within EX31_RS13635 at 165.388 kb on + strand at 165.388 kb on + strand at 165.389 kb on - strand at 165.389 kb on - strand at 165.445 kb on + strand, within EX31_RS13640 at 165.445 kb on + strand, within EX31_RS13640 at 165.445 kb on + strand, within EX31_RS13640 at 165.445 kb on + strand, within EX31_RS13640 at 165.446 kb on - strand, within EX31_RS13640 at 165.446 kb on - strand, within EX31_RS13640 at 165.669 kb on + strand, within EX31_RS13640 at 165.692 kb on + strand, within EX31_RS13640 at 165.692 kb on + strand, within EX31_RS13640 at 165.697 kb on + strand, within EX31_RS13640 at 165.747 kb on - strand at 165.751 kb on + strand at 165.781 kb on + strand at 165.781 kb on + strand at 165.781 kb on + strand at 165.781 kb on + strand at 165.781 kb on + strand at 165.781 kb on + strand at 165.781 kb on + strand at 165.786 kb on + strand at 165.787 kb on - strand at 165.787 kb on - strand at 165.823 kb on + strand at 165.823 kb on + strand at 165.823 kb on + strand at 165.823 kb on + strand at 165.824 kb on - strand at 165.824 kb on - strand at 165.824 kb on - strand at 165.858 kb on - strand at 165.858 kb on - strand at 165.860 kb on + strand at 165.863 kb on + strand at 165.867 kb on + strand at 165.876 kb on + strand at 165.879 kb on + strand at 165.879 kb on + strand at 165.879 kb on + strand at 165.890 kb on + strand at 165.890 kb on + strand at 166.044 kb on + strand, within EX31_RS13645 at 166.044 kb on + strand, within EX31_RS13645 at 166.281 kb on + strand, within EX31_RS13645 at 166.281 kb on + strand, within EX31_RS13645 at 166.292 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.337 kb on + strand, within EX31_RS13645 at 166.337 kb on + strand, within EX31_RS13645 at 166.361 kb on + strand, within EX31_RS13645 at 166.385 kb on + strand at 166.385 kb on + strand at 166.446 kb on - strand at 166.481 kb on + strand at 166.481 kb on + strand at 166.481 kb on + strand at 166.482 kb on - strand at 166.529 kb on + strand at 166.529 kb on + strand at 166.529 kb on + strand at 166.529 kb on + strand at 166.529 kb on + strand at 166.529 kb on + strand at 166.530 kb on - strand at 166.530 kb on - strand at 166.530 kb on - strand at 166.530 kb on - strand at 166.532 kb on + strand at 166.532 kb on + strand at 166.532 kb on + strand at 166.533 kb on - strand at 166.533 kb on - strand at 166.533 kb on - strand at 166.533 kb on - strand at 166.631 kb on + strand, within EX31_RS13650 at 166.632 kb on - strand, within EX31_RS13650 at 166.632 kb on - strand, within EX31_RS13650 at 166.661 kb on + strand, within EX31_RS13650 at 166.661 kb on + strand, within EX31_RS13650 at 166.687 kb on + strand, within EX31_RS13650 at 166.687 kb on + strand, within EX31_RS13650 at 166.687 kb on + strand, within EX31_RS13650 at 166.687 kb on + strand, within EX31_RS13650 at 166.687 kb on + strand, within EX31_RS13650 at 166.687 kb on + strand, within EX31_RS13650 at 166.687 kb on + strand, within EX31_RS13650 at 166.687 kb on + strand, within EX31_RS13650 at 166.687 kb on + strand, within EX31_RS13650 at 166.688 kb on - strand, within EX31_RS13650 at 166.758 kb on + strand, within EX31_RS13650 at 166.848 kb on + strand, within EX31_RS13650 at 166.884 kb on + strand, within EX31_RS13650 at 166.884 kb on + strand, within EX31_RS13650 at 166.884 kb on + strand, within EX31_RS13650 at 166.884 kb on + strand, within EX31_RS13650 at 166.885 kb on - strand, within EX31_RS13650 at 166.885 kb on - strand, within EX31_RS13650 at 166.908 kb on + strand, within EX31_RS13650 at 167.007 kb on + strand, within EX31_RS13650 at 167.007 kb on + strand, within EX31_RS13650 at 167.008 kb on - strand, within EX31_RS13650 at 167.008 kb on - strand, within EX31_RS13650 at 167.010 kb on + strand, within EX31_RS13650 at 167.011 kb on - strand, within EX31_RS13650 at 167.067 kb on - strand, within EX31_RS13650 at 167.115 kb on + strand, within EX31_RS13650 at 167.116 kb on - strand, within EX31_RS13650 at 167.320 kb on + strand, within EX31_RS13650 at 167.321 kb on - strand, within EX31_RS13650 at 167.370 kb on + strand, within EX31_RS13650 at 167.371 kb on - strand, within EX31_RS13650
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 164,932 - EX31_RS13635 0.38 +0.4 164,932 - EX31_RS13635 0.38 +0.1 165,143 + EX31_RS13635 0.65 +0.3 165,191 + EX31_RS13635 0.72 +1.1 165,191 + EX31_RS13635 0.72 +0.5 165,191 + EX31_RS13635 0.72 +0.2 165,191 + EX31_RS13635 0.72 -0.4 165,191 + EX31_RS13635 0.72 +0.4 165,191 + EX31_RS13635 0.72 +0.3 165,191 + EX31_RS13635 0.72 +1.0 165,192 - EX31_RS13635 0.72 +0.1 165,192 - EX31_RS13635 0.72 -0.0 165,192 - EX31_RS13635 0.72 -0.8 165,192 - EX31_RS13635 0.72 +0.3 165,192 - EX31_RS13635 0.72 -0.3 165,192 - EX31_RS13635 0.72 -0.7 165,192 - EX31_RS13635 0.72 -0.4 165,234 - EX31_RS13635 0.77 -0.2 165,234 - EX31_RS13635 0.77 -0.7 165,250 + EX31_RS13635 0.79 +0.4 165,250 + EX31_RS13635 0.79 +0.7 165,250 + EX31_RS13635 0.79 +0.5 165,250 + EX31_RS13635 0.79 -0.6 165,250 + EX31_RS13635 0.79 +0.7 165,250 + EX31_RS13635 0.79 +0.3 165,250 + EX31_RS13635 0.79 -1.3 165,250 + EX31_RS13635 0.79 -0.3 165,251 - EX31_RS13635 0.79 +0.9 165,251 - EX31_RS13635 0.79 -0.1 165,388 + -1.8 165,388 + +0.1 165,389 - -0.2 165,389 - -0.1 165,445 + EX31_RS13640 0.14 +0.1 165,445 + EX31_RS13640 0.14 +0.1 165,445 + EX31_RS13640 0.14 -0.4 165,445 + EX31_RS13640 0.14 -0.5 165,446 - EX31_RS13640 0.14 +0.6 165,446 - EX31_RS13640 0.14 +0.4 165,669 + EX31_RS13640 0.80 +0.5 165,692 + EX31_RS13640 0.87 -0.1 165,692 + EX31_RS13640 0.87 +0.5 165,697 + EX31_RS13640 0.88 -0.8 165,747 - +0.2 165,751 + +0.2 165,781 + -0.1 165,781 + +0.2 165,781 + +0.4 165,781 + -0.1 165,781 + -0.2 165,781 + -1.7 165,781 + -1.3 165,786 + -1.2 165,787 - +0.6 165,787 - +0.2 165,823 + +0.1 165,823 + -0.1 165,823 + +2.9 165,823 + +0.6 165,824 - -0.1 165,824 - -0.1 165,824 - -0.3 165,858 - -1.2 165,858 - -0.1 165,860 + -0.3 165,863 + -0.6 165,867 + -1.1 165,876 + +0.4 165,879 + +0.6 165,879 + -0.1 165,879 + -0.0 165,890 + -0.3 165,890 + +1.0 166,044 + EX31_RS13645 0.26 +0.4 166,044 + EX31_RS13645 0.26 +0.8 166,281 + EX31_RS13645 0.71 -0.2 166,281 + EX31_RS13645 0.71 +0.1 166,292 + EX31_RS13645 0.73 +1.0 166,308 + EX31_RS13645 0.76 +0.6 166,308 + EX31_RS13645 0.76 -0.0 166,308 + EX31_RS13645 0.76 +0.1 166,308 + EX31_RS13645 0.76 +0.3 166,308 + EX31_RS13645 0.76 -0.4 166,308 + EX31_RS13645 0.76 -0.3 166,308 + EX31_RS13645 0.76 +0.8 166,308 + EX31_RS13645 0.76 -0.1 166,308 + EX31_RS13645 0.76 +1.6 166,308 + EX31_RS13645 0.76 +1.1 166,308 + EX31_RS13645 0.76 +0.8 166,308 + EX31_RS13645 0.76 +0.6 166,308 + EX31_RS13645 0.76 -0.0 166,308 + EX31_RS13645 0.76 +0.1 166,308 + EX31_RS13645 0.76 +0.5 166,308 + EX31_RS13645 0.76 +0.9 166,337 + EX31_RS13645 0.82 +1.1 166,337 + EX31_RS13645 0.82 +0.5 166,361 + EX31_RS13645 0.86 +0.2 166,385 + -0.2 166,385 + +0.3 166,446 - +0.4 166,481 + -0.1 166,481 + -0.7 166,481 + +0.3 166,482 - -0.2 166,529 + -0.2 166,529 + -0.0 166,529 + -0.2 166,529 + -0.2 166,529 + -0.7 166,529 + -0.3 166,530 - +0.2 166,530 - +0.1 166,530 - +0.1 166,530 - -0.4 166,532 + -0.2 166,532 + +0.3 166,532 + +0.3 166,533 - +0.4 166,533 - +0.4 166,533 - +0.1 166,533 - -0.8 166,631 + EX31_RS13650 0.12 +0.5 166,632 - EX31_RS13650 0.12 +1.1 166,632 - EX31_RS13650 0.12 +0.2 166,661 + EX31_RS13650 0.14 +0.1 166,661 + EX31_RS13650 0.14 +0.4 166,687 + EX31_RS13650 0.16 +0.0 166,687 + EX31_RS13650 0.16 +0.7 166,687 + EX31_RS13650 0.16 +0.3 166,687 + EX31_RS13650 0.16 +0.1 166,687 + EX31_RS13650 0.16 +0.2 166,687 + EX31_RS13650 0.16 +0.1 166,687 + EX31_RS13650 0.16 +0.2 166,687 + EX31_RS13650 0.16 +0.7 166,687 + EX31_RS13650 0.16 -0.2 166,688 - EX31_RS13650 0.16 +0.8 166,758 + EX31_RS13650 0.21 -0.4 166,848 + EX31_RS13650 0.27 +0.7 166,884 + EX31_RS13650 0.29 +0.5 166,884 + EX31_RS13650 0.29 -0.0 166,884 + EX31_RS13650 0.29 -0.7 166,884 + EX31_RS13650 0.29 +1.0 166,885 - EX31_RS13650 0.30 -0.1 166,885 - EX31_RS13650 0.30 -0.6 166,908 + EX31_RS13650 0.31 -0.2 167,007 + EX31_RS13650 0.38 -1.1 167,007 + EX31_RS13650 0.38 +0.2 167,008 - EX31_RS13650 0.38 -1.7 167,008 - EX31_RS13650 0.38 +0.1 167,010 + EX31_RS13650 0.38 -0.3 167,011 - EX31_RS13650 0.38 +0.3 167,067 - EX31_RS13650 0.42 -0.7 167,115 + EX31_RS13650 0.45 +0.8 167,116 - EX31_RS13650 0.45 -0.6 167,320 + EX31_RS13650 0.59 -0.7 167,321 - EX31_RS13650 0.60 -0.7 167,370 + EX31_RS13650 0.63 -0.4 167,371 - EX31_RS13650 0.63 -0.8
Or see this region's nucleotide sequence