Strain Fitness in Rahnella sp. WP5 around EX31_RS12395

Experiment: NL-CCM; high oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; high oxygen
147,132	+		EX31_RS12385	0.68	+0.2
147,132	+		EX31_RS12385	0.68	-1.4
147,132	+		EX31_RS12385	0.68	-1.5
147,133	-		EX31_RS12385	0.68	-0.3
147,155	-		EX31_RS12385	0.71	-1.1
147,155	-		EX31_RS12385	0.71	-1.2
147,155	-		EX31_RS12385	0.71	-1.1
147,155	-		EX31_RS12385	0.71	-0.3
147,155	-		EX31_RS12385	0.71	-0.8
147,198	-		EX31_RS12385	0.76	-0.8
147,198	-		EX31_RS12385	0.76	-0.3
147,198	-		EX31_RS12385	0.76	-0.8
147,198	-		EX31_RS12385	0.76	-0.4
147,204	-		EX31_RS12385	0.77	-1.0
147,204	-		EX31_RS12385	0.77	-0.2
147,229	-		EX31_RS12385	0.80	-0.1
147,229	-		EX31_RS12385	0.80	-1.5
147,229	-		EX31_RS12385	0.80	-0.3
147,258	+		EX31_RS12385	0.83	-2.7
147,258	+		EX31_RS12385	0.83	-2.5
147,258	+		EX31_RS12385	0.83	-1.8
147,259	-		EX31_RS12385	0.83	-0.2
147,259	-		EX31_RS12385	0.83	-1.1
147,259	-		EX31_RS12385	0.83	-0.2
147,259	-		EX31_RS12385	0.83	-1.1
147,259	-		EX31_RS12385	0.83	-0.0
147,259	-		EX31_RS12385	0.83	-0.8
147,261	+		EX31_RS12385	0.83	-0.3
147,261	+		EX31_RS12385	0.83	-0.5
147,262	-		EX31_RS12385	0.84	+0.4
147,262	-		EX31_RS12385	0.84	-1.2
147,262	-		EX31_RS12385	0.84	+0.1
147,262	-		EX31_RS12385	0.84	-0.9
147,262	-		EX31_RS12385	0.84	+0.1
147,262	-		EX31_RS12385	0.84	-0.8
147,262	-		EX31_RS12385	0.84	-0.7
147,262	-		EX31_RS12385	0.84	-0.9
147,262	-		EX31_RS12385	0.84	-0.0
147,341	-				-0.9
147,341	-				-0.6
147,341	-				-2.0
147,472	-				+0.5
147,573	-		EX31_RS12390	0.22	+3.2
147,578	-		EX31_RS12390	0.23	+0.0
147,593	-		EX31_RS12390	0.26	+1.3
147,929	-				-2.0
147,973	-				-0.2
147,973	-				+0.4
147,973	-				+1.0
147,979	-				+0.5
147,979	-				+0.2
147,979	-				+0.8
147,979	-				+0.5
147,979	-				+0.5
147,979	-				-0.4
147,979	-				+0.5
147,979	-				-0.3
147,979	-				+0.1
148,027	-				+0.7
148,027	-				+0.3
148,027	-				-0.3
148,027	-				-0.0
148,027	-				-0.4
148,042	-				-1.2
148,042	-				+0.6
148,042	-				-0.5
148,075	-				+0.1
148,075	-				+0.6
148,075	-				+0.3
148,081	-		EX31_RS12395	0.10	+0.5
148,081	-		EX31_RS12395	0.10	+0.2
148,102	-		EX31_RS12395	0.18	+0.4
148,102	-		EX31_RS12395	0.18	-0.6
148,102	-		EX31_RS12395	0.18	+0.2
148,128	-		EX31_RS12395	0.27	+0.6
148,128	-		EX31_RS12395	0.27	+0.4
148,128	-		EX31_RS12395	0.27	+0.1
148,128	-		EX31_RS12395	0.27	+1.1
148,128	-		EX31_RS12395	0.27	+0.3
148,128	-		EX31_RS12395	0.27	+0.7
148,128	-		EX31_RS12395	0.27	+0.7
148,128	-		EX31_RS12395	0.27	-0.2
148,128	-		EX31_RS12395	0.27	+0.7
148,128	-		EX31_RS12395	0.27	+0.1
148,128	-		EX31_RS12395	0.27	+0.6
148,128	-		EX31_RS12395	0.27	+0.1
148,128	-		EX31_RS12395	0.27	+0.4
148,128	-		EX31_RS12395	0.27	+0.2
148,128	-		EX31_RS12395	0.27	+0.3
148,128	-		EX31_RS12395	0.27	+0.2
148,128	-		EX31_RS12395	0.27	+0.6
148,128	-		EX31_RS12395	0.27	+0.6
148,128	-		EX31_RS12395	0.27	+0.9
148,128	-		EX31_RS12395	0.27	+0.9
148,128	-		EX31_RS12395	0.27	-0.3
148,131	+		EX31_RS12395	0.28	-0.6
148,132	-		EX31_RS12395	0.28	+0.2
148,132	-		EX31_RS12395	0.28	-0.3
148,132	-		EX31_RS12395	0.28	+0.2
148,157	-		EX31_RS12395	0.37	+0.9
148,157	-		EX31_RS12395	0.37	+0.4
148,157	-		EX31_RS12395	0.37	-0.7
148,157	-		EX31_RS12395	0.37	+0.9
148,157	-		EX31_RS12395	0.37	+1.5
148,157	-		EX31_RS12395	0.37	-1.2
148,157	-		EX31_RS12395	0.37	+0.5
148,157	-		EX31_RS12395	0.37	+0.0
148,157	-		EX31_RS12395	0.37	+0.5
148,193	-		EX31_RS12395	0.49	-1.0
148,226	+		EX31_RS12395	0.61	+1.2
148,226	+		EX31_RS12395	0.61	-0.6
148,226	+		EX31_RS12395	0.61	-1.1
148,227	-		EX31_RS12395	0.61	+0.6
148,227	-		EX31_RS12395	0.61	+0.6
148,227	-		EX31_RS12395	0.61	+0.7
148,227	-		EX31_RS12395	0.61	+0.4
148,227	-		EX31_RS12395	0.61	+1.1
148,227	-		EX31_RS12395	0.61	-0.4
148,227	-		EX31_RS12395	0.61	+1.5
148,227	-		EX31_RS12395	0.61	+0.2
148,227	-		EX31_RS12395	0.61	+1.1
148,227	-		EX31_RS12395	0.61	+0.3
148,227	-		EX31_RS12395	0.61	+0.4
148,227	-		EX31_RS12395	0.61	+0.3
148,227	-		EX31_RS12395	0.61	-0.1
148,227	-		EX31_RS12395	0.61	+0.3
148,227	-		EX31_RS12395	0.61	-1.7
148,227	-		EX31_RS12395	0.61	+0.2
148,227	-		EX31_RS12395	0.61	+0.0
148,227	-		EX31_RS12395	0.61	+0.8
148,227	-		EX31_RS12395	0.61	-0.1
148,227	-		EX31_RS12395	0.61	+0.6
148,227	-		EX31_RS12395	0.61	+1.4
148,227	-		EX31_RS12395	0.61	+0.3
148,237	-		EX31_RS12395	0.65	+0.1
148,251	-		EX31_RS12395	0.69	+0.1
148,264	-		EX31_RS12395	0.74	-0.5
148,339	-				+0.5
148,339	-				-0.2
148,339	-				-0.3
148,339	-				-0.7
148,368	+				-1.1
148,369	-				+0.4
148,369	-				+0.8
148,369	-				-0.7
148,369	-				-1.1
148,369	-				-1.2
148,376	+				-2.0
148,376	+				+0.2
148,377	-				-2.4
148,377	-				-1.0
148,377	-				-1.1
148,377	-				-0.9
148,377	-				-3.1
148,442	+				+3.2
148,443	-				+1.6
148,471	-				+1.6
148,471	-				+1.6
148,595	-		EX31_RS12400	0.16	+1.0
148,689	-		EX31_RS12400	0.23	+0.2
148,703	+		EX31_RS12400	0.24	+2.6
148,704	-		EX31_RS12400	0.24	-0.0
148,704	-		EX31_RS12400	0.24	+1.0
148,899	-		EX31_RS12400	0.37	+0.2
148,936	-		EX31_RS12400	0.40	+2.0
148,936	-		EX31_RS12400	0.40	-0.0
148,936	-		EX31_RS12400	0.40	-0.0
148,958	+		EX31_RS12400	0.42	+3.6
148,985	-		EX31_RS12400	0.43	+1.6
148,985	-		EX31_RS12400	0.43	+2.6
149,007	-		EX31_RS12400	0.45	+0.2
149,007	-		EX31_RS12400	0.45	+1.6
149,007	-		EX31_RS12400	0.45	+1.6
149,007	-		EX31_RS12400	0.45	+0.6
149,064	-		EX31_RS12400	0.49	+0.6
149,141	+		EX31_RS12400	0.54	+1.6
149,142	-		EX31_RS12400	0.54	+0.2
149,142	-		EX31_RS12400	0.54	+2.6
149,259	-		EX31_RS12400	0.63	-0.2
149,259	-		EX31_RS12400	0.63	+1.6
149,263	-		EX31_RS12400	0.63	+0.6
149,263	-		EX31_RS12400	0.63	+0.6