Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10630 and EX31_RS10635 are separated by 407 nucleotides EX31_RS10635 and EX31_RS10640 are separated by 234 nucleotides
EX31_RS10630: EX31_RS10630 - glucose-6-phosphate dehydrogenase, at 38,707 to 40,182
_RS10630
EX31_RS10635: EX31_RS10635 - MurR/RpiR family transcriptional regulator, at 40,590 to 41,459
_RS10635
EX31_RS10640: EX31_RS10640 - pyruvate kinase, at 41,694 to 43,136
_RS10640
Position (kb) 40
41
42 Strain fitness (log2 ratio) -2
-1
0
1 at 40.010 kb on + strand, within EX31_RS10630 at 40.209 kb on + strand at 40.210 kb on - strand at 40.215 kb on - strand at 40.215 kb on - strand at 40.215 kb on - strand at 40.264 kb on - strand at 40.264 kb on - strand at 40.264 kb on - strand at 40.291 kb on - strand at 40.291 kb on - strand at 40.291 kb on - strand at 40.291 kb on - strand at 40.312 kb on + strand at 40.313 kb on - strand at 40.365 kb on - strand at 40.365 kb on - strand at 40.365 kb on - strand at 40.384 kb on - strand at 40.384 kb on - strand at 40.435 kb on + strand at 40.446 kb on - strand at 40.518 kb on - strand at 40.518 kb on - strand at 40.521 kb on - strand at 40.523 kb on - strand at 40.523 kb on - strand at 40.523 kb on - strand at 40.574 kb on + strand at 40.596 kb on - strand at 40.737 kb on - strand, within EX31_RS10635 at 40.737 kb on - strand, within EX31_RS10635 at 40.741 kb on + strand, within EX31_RS10635 at 40.741 kb on + strand, within EX31_RS10635 at 40.792 kb on + strand, within EX31_RS10635 at 40.793 kb on - strand, within EX31_RS10635 at 40.793 kb on - strand, within EX31_RS10635 at 40.827 kb on + strand, within EX31_RS10635 at 40.827 kb on + strand, within EX31_RS10635 at 40.827 kb on + strand, within EX31_RS10635 at 40.827 kb on + strand, within EX31_RS10635 at 40.827 kb on + strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.828 kb on - strand, within EX31_RS10635 at 40.839 kb on - strand, within EX31_RS10635 at 40.869 kb on + strand, within EX31_RS10635 at 40.869 kb on + strand, within EX31_RS10635 at 40.869 kb on + strand, within EX31_RS10635 at 40.870 kb on - strand, within EX31_RS10635 at 40.870 kb on - strand, within EX31_RS10635 at 40.923 kb on - strand, within EX31_RS10635 at 41.048 kb on + strand, within EX31_RS10635 at 41.064 kb on + strand, within EX31_RS10635 at 41.065 kb on - strand, within EX31_RS10635 at 41.065 kb on - strand, within EX31_RS10635 at 41.065 kb on - strand, within EX31_RS10635 at 41.199 kb on - strand, within EX31_RS10635 at 41.222 kb on + strand, within EX31_RS10635 at 41.222 kb on + strand, within EX31_RS10635 at 41.222 kb on + strand, within EX31_RS10635 at 41.225 kb on + strand, within EX31_RS10635 at 41.226 kb on - strand, within EX31_RS10635 at 41.289 kb on + strand, within EX31_RS10635 at 41.289 kb on + strand, within EX31_RS10635 at 41.289 kb on + strand, within EX31_RS10635 at 41.289 kb on + strand, within EX31_RS10635 at 41.289 kb on + strand, within EX31_RS10635 at 41.290 kb on - strand, within EX31_RS10635 at 41.290 kb on - strand, within EX31_RS10635 at 41.291 kb on + strand, within EX31_RS10635 at 41.291 kb on + strand, within EX31_RS10635 at 41.291 kb on + strand, within EX31_RS10635 at 41.292 kb on - strand, within EX31_RS10635 at 41.352 kb on - strand, within EX31_RS10635 at 41.381 kb on + strand at 41.381 kb on + strand at 41.457 kb on + strand at 41.495 kb on - strand at 41.499 kb on + strand at 41.499 kb on + strand at 41.499 kb on + strand at 41.499 kb on + strand at 41.499 kb on + strand at 41.499 kb on + strand at 41.499 kb on + strand at 41.499 kb on + strand at 41.499 kb on + strand at 41.499 kb on + strand at 41.499 kb on + strand at 41.499 kb on + strand at 41.499 kb on + strand at 41.499 kb on + strand at 41.499 kb on + strand at 41.500 kb on + strand at 41.500 kb on - strand at 41.500 kb on - strand at 41.500 kb on - strand at 41.500 kb on - strand at 41.501 kb on + strand at 41.501 kb on + strand at 41.501 kb on + strand at 41.501 kb on + strand at 41.501 kb on + strand at 41.501 kb on + strand at 41.501 kb on + strand at 41.502 kb on - strand at 41.502 kb on - strand at 41.523 kb on + strand at 41.523 kb on + strand at 41.547 kb on + strand at 41.630 kb on + strand at 41.630 kb on + strand at 41.689 kb on + strand at 41.689 kb on + strand at 41.689 kb on + strand at 41.759 kb on + strand at 41.802 kb on - strand at 41.802 kb on - strand at 42.033 kb on + strand, within EX31_RS10640 at 42.035 kb on + strand, within EX31_RS10640 at 42.035 kb on + strand, within EX31_RS10640 at 42.036 kb on - strand, within EX31_RS10640 at 42.076 kb on + strand, within EX31_RS10640 at 42.171 kb on - strand, within EX31_RS10640 at 42.182 kb on + strand, within EX31_RS10640 at 42.239 kb on + strand, within EX31_RS10640 at 42.239 kb on + strand, within EX31_RS10640 at 42.239 kb on + strand, within EX31_RS10640 at 42.240 kb on - strand, within EX31_RS10640 at 42.240 kb on - strand, within EX31_RS10640 at 42.262 kb on + strand, within EX31_RS10640 at 42.262 kb on + strand, within EX31_RS10640 at 42.262 kb on + strand, within EX31_RS10640 at 42.262 kb on + strand, within EX31_RS10640 at 42.263 kb on - strand, within EX31_RS10640 at 42.267 kb on + strand, within EX31_RS10640 at 42.305 kb on + strand, within EX31_RS10640
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 40,010 + EX31_RS10630 0.88 -0.1 40,209 + -0.7 40,210 - +0.0 40,215 - -0.2 40,215 - +0.8 40,215 - +1.0 40,264 - +0.5 40,264 - -0.6 40,264 - +1.5 40,291 - +0.2 40,291 - -0.7 40,291 - -0.5 40,291 - +0.8 40,312 + -0.7 40,313 - +0.9 40,365 - -0.8 40,365 - -0.6 40,365 - -0.3 40,384 - +0.1 40,384 - -0.3 40,435 + -0.5 40,446 - -1.0 40,518 - +0.9 40,518 - +0.1 40,521 - +1.0 40,523 - -0.1 40,523 - -0.4 40,523 - +0.8 40,574 + +0.9 40,596 - +1.3 40,737 - EX31_RS10635 0.17 +1.0 40,737 - EX31_RS10635 0.17 +0.2 40,741 + EX31_RS10635 0.17 -0.4 40,741 + EX31_RS10635 0.17 +0.2 40,792 + EX31_RS10635 0.23 +0.6 40,793 - EX31_RS10635 0.23 -1.4 40,793 - EX31_RS10635 0.23 -0.3 40,827 + EX31_RS10635 0.27 +0.5 40,827 + EX31_RS10635 0.27 -1.2 40,827 + EX31_RS10635 0.27 +1.0 40,827 + EX31_RS10635 0.27 -0.1 40,827 + EX31_RS10635 0.27 +0.0 40,828 - EX31_RS10635 0.27 +1.1 40,828 - EX31_RS10635 0.27 +0.5 40,828 - EX31_RS10635 0.27 +1.1 40,828 - EX31_RS10635 0.27 +0.1 40,828 - EX31_RS10635 0.27 +0.2 40,828 - EX31_RS10635 0.27 -1.9 40,828 - EX31_RS10635 0.27 +0.8 40,828 - EX31_RS10635 0.27 +0.2 40,828 - EX31_RS10635 0.27 +0.4 40,828 - EX31_RS10635 0.27 +0.4 40,828 - EX31_RS10635 0.27 -0.7 40,828 - EX31_RS10635 0.27 +0.3 40,828 - EX31_RS10635 0.27 -0.6 40,828 - EX31_RS10635 0.27 +0.1 40,828 - EX31_RS10635 0.27 +0.1 40,839 - EX31_RS10635 0.29 +0.2 40,869 + EX31_RS10635 0.32 -0.0 40,869 + EX31_RS10635 0.32 -0.7 40,869 + EX31_RS10635 0.32 +0.8 40,870 - EX31_RS10635 0.32 +0.1 40,870 - EX31_RS10635 0.32 -0.6 40,923 - EX31_RS10635 0.38 +0.7 41,048 + EX31_RS10635 0.53 +0.8 41,064 + EX31_RS10635 0.54 +1.2 41,065 - EX31_RS10635 0.55 -1.2 41,065 - EX31_RS10635 0.55 +0.4 41,065 - EX31_RS10635 0.55 +0.3 41,199 - EX31_RS10635 0.70 -0.2 41,222 + EX31_RS10635 0.73 +0.1 41,222 + EX31_RS10635 0.73 +0.5 41,222 + EX31_RS10635 0.73 +0.5 41,225 + EX31_RS10635 0.73 +0.4 41,226 - EX31_RS10635 0.73 -0.2 41,289 + EX31_RS10635 0.80 +1.3 41,289 + EX31_RS10635 0.80 +0.6 41,289 + EX31_RS10635 0.80 +0.5 41,289 + EX31_RS10635 0.80 -0.1 41,289 + EX31_RS10635 0.80 +1.7 41,290 - EX31_RS10635 0.80 -1.3 41,290 - EX31_RS10635 0.80 +1.5 41,291 + EX31_RS10635 0.81 +1.1 41,291 + EX31_RS10635 0.81 +1.3 41,291 + EX31_RS10635 0.81 +0.9 41,292 - EX31_RS10635 0.81 -0.6 41,352 - EX31_RS10635 0.88 +0.4 41,381 + -0.4 41,381 + +1.6 41,457 + +0.4 41,495 - -0.5 41,499 + +0.2 41,499 + +0.2 41,499 + -0.1 41,499 + +1.1 41,499 + +0.6 41,499 + +0.3 41,499 + -0.3 41,499 + -0.3 41,499 + +0.9 41,499 + +0.2 41,499 + +1.1 41,499 + +0.7 41,499 + -0.5 41,499 + -0.0 41,499 + -0.8 41,500 + +0.3 41,500 - +0.5 41,500 - -1.2 41,500 - +0.8 41,500 - -0.1 41,501 + +0.9 41,501 + +0.6 41,501 + +0.1 41,501 + -0.4 41,501 + -0.7 41,501 + +0.2 41,501 + +0.4 41,502 - -2.5 41,502 - +0.7 41,523 + -0.1 41,523 + -0.6 41,547 + +0.6 41,630 + -1.2 41,630 + +0.7 41,689 + +0.5 41,689 + -0.2 41,689 + -0.4 41,759 + +1.2 41,802 - +0.9 41,802 - -1.4 42,033 + EX31_RS10640 0.23 +0.1 42,035 + EX31_RS10640 0.24 +0.1 42,035 + EX31_RS10640 0.24 +0.3 42,036 - EX31_RS10640 0.24 +0.3 42,076 + EX31_RS10640 0.26 -0.6 42,171 - EX31_RS10640 0.33 +0.8 42,182 + EX31_RS10640 0.34 -0.5 42,239 + EX31_RS10640 0.38 -0.3 42,239 + EX31_RS10640 0.38 +0.4 42,239 + EX31_RS10640 0.38 +0.8 42,240 - EX31_RS10640 0.38 -0.3 42,240 - EX31_RS10640 0.38 -2.1 42,262 + EX31_RS10640 0.39 +1.5 42,262 + EX31_RS10640 0.39 +1.0 42,262 + EX31_RS10640 0.39 +0.1 42,262 + EX31_RS10640 0.39 +0.7 42,263 - EX31_RS10640 0.39 -0.5 42,267 + EX31_RS10640 0.40 +1.0 42,305 + EX31_RS10640 0.42 +0.6
Or see this region's nucleotide sequence