Strain Fitness in Rahnella sp. WP5 around EX31_RS09990

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09980 and EX31_RS09985 are separated by 215 nucleotidesEX31_RS09985 and EX31_RS09990 are separated by 71 nucleotidesEX31_RS09990 and EX31_RS09995 are separated by 291 nucleotidesEX31_RS09995 and EX31_RS10000 are separated by 113 nucleotides EX31_RS09980: EX31_RS09980 - tryptophan synthase subunit alpha, at 205,754 to 206,560 _RS09980 EX31_RS09985: EX31_RS09985 - BON domain-containing protein, at 206,776 to 207,090 _RS09985 EX31_RS09990: EX31_RS09990 - outer membrane protein OmpW, at 207,162 to 207,794 _RS09990 EX31_RS09995: EX31_RS09995 - YkgJ family cysteine cluster protein, at 208,086 to 208,463 _RS09995 EX31_RS10000: EX31_RS10000 - UPF0259 family protein, at 208,577 to 209,332 _RS10000 Position (kb) 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 206.203 kb on + strand, within EX31_RS09980at 206.203 kb on + strand, within EX31_RS09980at 206.203 kb on + strand, within EX31_RS09980at 206.270 kb on + strand, within EX31_RS09980at 206.276 kb on + strand, within EX31_RS09980at 206.276 kb on + strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.277 kb on - strand, within EX31_RS09980at 206.347 kb on + strand, within EX31_RS09980at 206.353 kb on - strand, within EX31_RS09980at 206.360 kb on + strand, within EX31_RS09980at 206.361 kb on - strand, within EX31_RS09980at 206.446 kb on + strand, within EX31_RS09980at 206.446 kb on + strand, within EX31_RS09980at 206.470 kb on + strand, within EX31_RS09980at 206.470 kb on + strand, within EX31_RS09980at 206.558 kb on + strandat 206.647 kb on + strandat 206.648 kb on - strandat 206.650 kb on + strandat 206.662 kb on + strandat 206.696 kb on + strandat 206.696 kb on + strandat 206.696 kb on + strandat 206.697 kb on - strandat 206.697 kb on - strandat 206.728 kb on - strandat 206.878 kb on + strand, within EX31_RS09985at 206.879 kb on - strand, within EX31_RS09985at 206.909 kb on + strand, within EX31_RS09985at 206.931 kb on + strand, within EX31_RS09985at 206.931 kb on + strand, within EX31_RS09985at 206.931 kb on + strand, within EX31_RS09985at 206.932 kb on - strand, within EX31_RS09985at 206.932 kb on - strand, within EX31_RS09985at 206.932 kb on - strand, within EX31_RS09985at 206.940 kb on + strand, within EX31_RS09985at 206.940 kb on + strand, within EX31_RS09985at 206.941 kb on - strand, within EX31_RS09985at 206.941 kb on - strand, within EX31_RS09985at 206.970 kb on + strand, within EX31_RS09985at 207.075 kb on + strandat 207.100 kb on + strandat 207.101 kb on - strandat 207.101 kb on - strandat 207.189 kb on - strandat 207.189 kb on - strandat 207.189 kb on - strandat 207.189 kb on - strandat 207.189 kb on - strandat 207.314 kb on - strand, within EX31_RS09990at 207.314 kb on - strand, within EX31_RS09990at 207.409 kb on + strand, within EX31_RS09990at 207.410 kb on - strand, within EX31_RS09990at 207.421 kb on + strand, within EX31_RS09990at 207.422 kb on - strand, within EX31_RS09990at 207.422 kb on - strand, within EX31_RS09990at 207.422 kb on - strand, within EX31_RS09990at 207.422 kb on - strand, within EX31_RS09990at 207.429 kb on - strand, within EX31_RS09990at 207.433 kb on - strand, within EX31_RS09990at 207.433 kb on - strand, within EX31_RS09990at 207.475 kb on + strand, within EX31_RS09990at 207.475 kb on + strand, within EX31_RS09990at 207.476 kb on - strand, within EX31_RS09990at 207.476 kb on - strand, within EX31_RS09990at 207.476 kb on - strand, within EX31_RS09990at 207.605 kb on - strand, within EX31_RS09990at 207.605 kb on - strand, within EX31_RS09990at 207.605 kb on - strand, within EX31_RS09990at 207.641 kb on + strand, within EX31_RS09990at 207.705 kb on + strand, within EX31_RS09990at 207.772 kb on - strandat 207.818 kb on - strandat 207.822 kb on - strandat 207.839 kb on + strandat 207.843 kb on + strandat 207.844 kb on - strandat 207.844 kb on - strandat 207.853 kb on + strandat 207.884 kb on - strandat 207.884 kb on - strandat 207.925 kb on - strandat 208.007 kb on + strandat 208.041 kb on + strandat 208.041 kb on + strandat 208.042 kb on - strandat 208.042 kb on - strandat 208.042 kb on - strandat 208.045 kb on + strandat 208.045 kb on + strandat 208.046 kb on - strandat 208.046 kb on - strandat 208.109 kb on + strandat 208.109 kb on + strandat 208.109 kb on + strandat 208.134 kb on + strand, within EX31_RS09995at 208.153 kb on - strand, within EX31_RS09995at 208.247 kb on + strand, within EX31_RS09995at 208.398 kb on + strand, within EX31_RS09995at 208.421 kb on - strand, within EX31_RS09995at 208.525 kb on - strandat 208.525 kb on - strandat 208.531 kb on + strandat 208.595 kb on - strandat 208.602 kb on - strandat 208.613 kb on + strandat 208.615 kb on + strandat 208.640 kb on - strandat 208.671 kb on + strand, within EX31_RS10000at 208.686 kb on + strand, within EX31_RS10000at 208.686 kb on + strand, within EX31_RS10000at 208.687 kb on - strand, within EX31_RS10000at 208.781 kb on + strand, within EX31_RS10000at 208.781 kb on + strand, within EX31_RS10000at 208.783 kb on + strand, within EX31_RS10000at 208.783 kb on + strand, within EX31_RS10000at 208.783 kb on + strand, within EX31_RS10000at 208.784 kb on - strand, within EX31_RS10000at 208.784 kb on - strand, within EX31_RS10000

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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206,203 + EX31_RS09980 0.56 +0.6
206,203 + EX31_RS09980 0.56 -0.5
206,203 + EX31_RS09980 0.56 -0.7
206,270 + EX31_RS09980 0.64 -0.5
206,276 + EX31_RS09980 0.65 +0.4
206,276 + EX31_RS09980 0.65 +0.4
206,277 - EX31_RS09980 0.65 -0.8
206,277 - EX31_RS09980 0.65 -0.6
206,277 - EX31_RS09980 0.65 +0.7
206,277 - EX31_RS09980 0.65 +0.3
206,347 + EX31_RS09980 0.73 +0.1
206,353 - EX31_RS09980 0.74 -2.7
206,360 + EX31_RS09980 0.75 -0.2
206,361 - EX31_RS09980 0.75 -3.0
206,446 + EX31_RS09980 0.86 -1.0
206,446 + EX31_RS09980 0.86 -2.0
206,470 + EX31_RS09980 0.89 -0.1
206,470 + EX31_RS09980 0.89 -0.3
206,558 + -3.3
206,647 + -0.8
206,648 - +0.1
206,650 + -0.7
206,662 + +0.7
206,696 + -0.9
206,696 + -0.1
206,696 + -0.7
206,697 - +0.3
206,697 - +0.3
206,728 - +0.1
206,878 + EX31_RS09985 0.32 +1.3
206,879 - EX31_RS09985 0.33 -0.5
206,909 + EX31_RS09985 0.42 -1.1
206,931 + EX31_RS09985 0.49 +1.0
206,931 + EX31_RS09985 0.49 -0.3
206,931 + EX31_RS09985 0.49 -0.7
206,932 - EX31_RS09985 0.50 -0.5
206,932 - EX31_RS09985 0.50 -0.3
206,932 - EX31_RS09985 0.50 +0.7
206,940 + EX31_RS09985 0.52 -0.8
206,940 + EX31_RS09985 0.52 +0.8
206,941 - EX31_RS09985 0.52 +0.4
206,941 - EX31_RS09985 0.52 -1.5
206,970 + EX31_RS09985 0.62 +0.5
207,075 + +0.2
207,100 + +0.8
207,101 - -1.3
207,101 - +0.1
207,189 - -0.2
207,189 - +1.0
207,189 - +0.4
207,189 - +0.1
207,189 - +0.8
207,314 - EX31_RS09990 0.24 +1.1
207,314 - EX31_RS09990 0.24 +1.3
207,409 + EX31_RS09990 0.39 +0.2
207,410 - EX31_RS09990 0.39 +1.2
207,421 + EX31_RS09990 0.41 +0.2
207,422 - EX31_RS09990 0.41 +0.4
207,422 - EX31_RS09990 0.41 +0.9
207,422 - EX31_RS09990 0.41 +1.3
207,422 - EX31_RS09990 0.41 +0.5
207,429 - EX31_RS09990 0.42 -0.2
207,433 - EX31_RS09990 0.43 +0.5
207,433 - EX31_RS09990 0.43 -0.2
207,475 + EX31_RS09990 0.49 -0.3
207,475 + EX31_RS09990 0.49 -3.0
207,476 - EX31_RS09990 0.50 +1.9
207,476 - EX31_RS09990 0.50 +0.1
207,476 - EX31_RS09990 0.50 -0.4
207,605 - EX31_RS09990 0.70 +0.1
207,605 - EX31_RS09990 0.70 +0.6
207,605 - EX31_RS09990 0.70 +0.3
207,641 + EX31_RS09990 0.76 -0.7
207,705 + EX31_RS09990 0.86 -0.5
207,772 - -0.0
207,818 - -0.6
207,822 - -0.1
207,839 + +0.9
207,843 + -0.8
207,844 - +1.1
207,844 - -0.4
207,853 + -0.0
207,884 - +0.9
207,884 - -0.3
207,925 - +0.6
208,007 + -0.6
208,041 + +1.2
208,041 + -1.8
208,042 - -0.8
208,042 - -0.3
208,042 - +1.0
208,045 + -1.0
208,045 + -0.4
208,046 - +0.2
208,046 - -0.8
208,109 + +0.8
208,109 + -0.5
208,109 + +0.3
208,134 + EX31_RS09995 0.13 -1.0
208,153 - EX31_RS09995 0.18 +1.7
208,247 + EX31_RS09995 0.43 -0.4
208,398 + EX31_RS09995 0.83 +0.1
208,421 - EX31_RS09995 0.89 +1.0
208,525 - +0.2
208,525 - -0.3
208,531 + +0.5
208,595 - -0.1
208,602 - +0.3
208,613 + -0.7
208,615 + -0.5
208,640 - -0.5
208,671 + EX31_RS10000 0.12 -0.2
208,686 + EX31_RS10000 0.14 -0.1
208,686 + EX31_RS10000 0.14 -0.8
208,687 - EX31_RS10000 0.15 -0.6
208,781 + EX31_RS10000 0.27 -1.7
208,781 + EX31_RS10000 0.27 -0.2
208,783 + EX31_RS10000 0.27 -1.1
208,783 + EX31_RS10000 0.27 -0.9
208,783 + EX31_RS10000 0.27 -0.5
208,784 - EX31_RS10000 0.27 +0.4
208,784 - EX31_RS10000 0.27 +0.9

Or see this region's nucleotide sequence