Strain Fitness in Rahnella sp. WP5 around EX31_RS09340

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09330 and EX31_RS09335 are separated by 413 nucleotidesEX31_RS09335 and EX31_RS09340 are separated by 53 nucleotidesEX31_RS09340 and EX31_RS09345 are separated by 114 nucleotides EX31_RS09330: EX31_RS09330 - chloride channel protein, at 69,225 to 70,928 _RS09330 EX31_RS09335: EX31_RS09335 - hypothetical protein, at 71,342 to 71,656 _RS09335 EX31_RS09340: EX31_RS09340 - HigA family addiction module antidote protein, at 71,710 to 72,027 _RS09340 EX31_RS09345: EX31_RS09345 - ABC transporter substrate-binding protein, at 72,142 to 73,719 _RS09345 Position (kb) 71 72 73Strain fitness (log2 ratio) -2 -1 0 1at 70.929 kb on - strandat 71.124 kb on + strandat 71.124 kb on + strandat 71.124 kb on + strandat 71.125 kb on - strandat 71.125 kb on - strandat 71.250 kb on - strandat 71.250 kb on - strandat 71.318 kb on + strandat 71.424 kb on + strand, within EX31_RS09335at 71.496 kb on + strand, within EX31_RS09335at 71.496 kb on + strand, within EX31_RS09335at 71.519 kb on + strand, within EX31_RS09335at 71.621 kb on + strand, within EX31_RS09335at 71.625 kb on + strandat 71.625 kb on + strandat 71.625 kb on + strandat 71.625 kb on + strandat 71.625 kb on + strandat 71.654 kb on + strandat 71.659 kb on - strandat 71.666 kb on + strandat 71.692 kb on + strandat 71.692 kb on + strandat 71.692 kb on + strandat 71.709 kb on + strandat 71.709 kb on + strandat 71.727 kb on + strandat 71.727 kb on + strandat 71.753 kb on + strand, within EX31_RS09340at 71.753 kb on + strand, within EX31_RS09340at 71.826 kb on + strand, within EX31_RS09340at 71.826 kb on + strand, within EX31_RS09340at 71.847 kb on + strand, within EX31_RS09340at 71.943 kb on + strand, within EX31_RS09340at 71.985 kb on + strand, within EX31_RS09340at 72.013 kb on - strandat 72.143 kb on + strandat 72.144 kb on - strandat 72.293 kb on + strandat 72.413 kb on + strand, within EX31_RS09345at 72.413 kb on + strand, within EX31_RS09345at 72.414 kb on - strand, within EX31_RS09345at 72.414 kb on - strand, within EX31_RS09345at 72.423 kb on + strand, within EX31_RS09345at 72.424 kb on - strand, within EX31_RS09345at 72.617 kb on - strand, within EX31_RS09345at 72.627 kb on + strand, within EX31_RS09345at 72.627 kb on + strand, within EX31_RS09345at 72.683 kb on + strand, within EX31_RS09345at 72.683 kb on + strand, within EX31_RS09345at 72.684 kb on - strand, within EX31_RS09345at 72.790 kb on + strand, within EX31_RS09345at 72.790 kb on + strand, within EX31_RS09345at 72.870 kb on - strand, within EX31_RS09345at 72.904 kb on + strand, within EX31_RS09345at 72.904 kb on + strand, within EX31_RS09345at 72.904 kb on + strand, within EX31_RS09345at 72.905 kb on - strand, within EX31_RS09345at 72.905 kb on - strand, within EX31_RS09345at 72.905 kb on - strand, within EX31_RS09345at 72.953 kb on + strand, within EX31_RS09345at 72.954 kb on - strand, within EX31_RS09345at 72.976 kb on - strand, within EX31_RS09345at 72.976 kb on - strand, within EX31_RS09345at 72.979 kb on + strand, within EX31_RS09345at 72.980 kb on - strand, within EX31_RS09345

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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70,929 - +0.0
71,124 + -1.2
71,124 + -1.9
71,124 + -0.4
71,125 - -1.2
71,125 - -1.1
71,250 - +1.3
71,250 - -0.9
71,318 + +0.4
71,424 + EX31_RS09335 0.26 -0.8
71,496 + EX31_RS09335 0.49 -0.5
71,496 + EX31_RS09335 0.49 +0.7
71,519 + EX31_RS09335 0.56 +0.1
71,621 + EX31_RS09335 0.89 +0.0
71,625 + -0.5
71,625 + -1.8
71,625 + +0.6
71,625 + -0.5
71,625 + +0.8
71,654 + -0.1
71,659 - +0.2
71,666 + -1.0
71,692 + -0.5
71,692 + +0.0
71,692 + -0.5
71,709 + +0.4
71,709 + +0.8
71,727 + +0.3
71,727 + +1.1
71,753 + EX31_RS09340 0.14 +0.8
71,753 + EX31_RS09340 0.14 +0.8
71,826 + EX31_RS09340 0.36 +0.9
71,826 + EX31_RS09340 0.36 +1.0
71,847 + EX31_RS09340 0.43 +1.4
71,943 + EX31_RS09340 0.73 +0.8
71,985 + EX31_RS09340 0.86 +0.6
72,013 - -1.5
72,143 + -1.2
72,144 - -1.4
72,293 + -0.4
72,413 + EX31_RS09345 0.17 +0.1
72,413 + EX31_RS09345 0.17 -1.1
72,414 - EX31_RS09345 0.17 +1.0
72,414 - EX31_RS09345 0.17 -0.1
72,423 + EX31_RS09345 0.18 +0.9
72,424 - EX31_RS09345 0.18 +1.0
72,617 - EX31_RS09345 0.30 -1.0
72,627 + EX31_RS09345 0.31 -0.1
72,627 + EX31_RS09345 0.31 +0.5
72,683 + EX31_RS09345 0.34 -1.2
72,683 + EX31_RS09345 0.34 +1.2
72,684 - EX31_RS09345 0.34 -1.0
72,790 + EX31_RS09345 0.41 -0.3
72,790 + EX31_RS09345 0.41 -1.8
72,870 - EX31_RS09345 0.46 -1.1
72,904 + EX31_RS09345 0.48 -1.0
72,904 + EX31_RS09345 0.48 +0.1
72,904 + EX31_RS09345 0.48 -0.5
72,905 - EX31_RS09345 0.48 -0.7
72,905 - EX31_RS09345 0.48 +0.1
72,905 - EX31_RS09345 0.48 +0.6
72,953 + EX31_RS09345 0.51 -0.7
72,954 - EX31_RS09345 0.51 -0.1
72,976 - EX31_RS09345 0.53 -2.2
72,976 - EX31_RS09345 0.53 -0.9
72,979 + EX31_RS09345 0.53 -1.1
72,980 - EX31_RS09345 0.53 -0.8

Or see this region's nucleotide sequence