Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07560 and EX31_RS07565 are separated by 130 nucleotides EX31_RS07565 and EX31_RS07570 overlap by 1 nucleotides EX31_RS07570 and EX31_RS07575 are separated by 130 nucleotides
EX31_RS07560: EX31_RS07560 - ATP-dependent chaperone ClpB, at 213 to 2,786
_RS07560
EX31_RS07565: EX31_RS07565 - polyphenol oxidase, at 2,917 to 3,654
_RS07565
EX31_RS07570: EX31_RS07570 - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 3,654 to 4,631
_RS07570
EX31_RS07575: EX31_RS07575 - outer membrane protein assembly factor BamD, at 4,762 to 5,496
_RS07575
Position (kb) 3
4
5 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 2.670 kb on - strand at 2.670 kb on - strand at 2.702 kb on + strand at 2.702 kb on + strand at 2.702 kb on + strand at 2.702 kb on + strand at 2.703 kb on - strand at 2.768 kb on + strand at 2.769 kb on - strand at 2.786 kb on + strand at 2.787 kb on - strand at 2.787 kb on - strand at 2.787 kb on - strand at 2.787 kb on - strand at 2.787 kb on - strand at 2.824 kb on + strand at 2.824 kb on + strand at 2.824 kb on + strand at 2.825 kb on - strand at 2.825 kb on - strand at 2.825 kb on - strand at 2.855 kb on + strand at 2.856 kb on - strand at 2.866 kb on + strand at 2.866 kb on + strand at 2.866 kb on + strand at 2.866 kb on + strand at 2.866 kb on + strand at 2.866 kb on + strand at 2.866 kb on + strand at 2.867 kb on - strand at 2.867 kb on - strand at 2.867 kb on - strand at 2.867 kb on - strand at 2.867 kb on - strand at 2.867 kb on - strand at 2.867 kb on - strand at 2.867 kb on - strand at 2.868 kb on + strand at 2.868 kb on + strand at 2.869 kb on - strand at 2.869 kb on - strand at 2.886 kb on + strand at 2.886 kb on + strand at 2.886 kb on + strand at 2.918 kb on + strand at 2.918 kb on + strand at 2.918 kb on + strand at 2.918 kb on + strand at 2.918 kb on + strand at 2.918 kb on + strand at 2.918 kb on + strand at 2.918 kb on + strand at 2.918 kb on + strand at 2.919 kb on - strand at 2.919 kb on - strand at 2.919 kb on - strand at 2.919 kb on - strand at 2.919 kb on - strand at 2.920 kb on + strand at 2.921 kb on - strand at 2.921 kb on - strand at 2.921 kb on - strand at 2.953 kb on - strand at 2.975 kb on + strand at 2.976 kb on - strand at 3.005 kb on + strand, within EX31_RS07565 at 3.005 kb on + strand, within EX31_RS07565 at 3.017 kb on + strand, within EX31_RS07565 at 3.017 kb on + strand, within EX31_RS07565 at 3.018 kb on - strand, within EX31_RS07565 at 3.066 kb on - strand, within EX31_RS07565 at 3.066 kb on - strand, within EX31_RS07565 at 3.066 kb on - strand, within EX31_RS07565 at 3.133 kb on - strand, within EX31_RS07565 at 3.238 kb on - strand, within EX31_RS07565 at 3.326 kb on - strand, within EX31_RS07565 at 3.374 kb on + strand, within EX31_RS07565 at 3.374 kb on + strand, within EX31_RS07565 at 3.403 kb on - strand, within EX31_RS07565 at 3.493 kb on + strand, within EX31_RS07565 at 3.493 kb on + strand, within EX31_RS07565 at 3.493 kb on + strand, within EX31_RS07565 at 3.494 kb on - strand, within EX31_RS07565 at 3.495 kb on + strand, within EX31_RS07565 at 3.495 kb on + strand, within EX31_RS07565 at 3.495 kb on + strand, within EX31_RS07565 at 3.495 kb on + strand, within EX31_RS07565 at 3.495 kb on + strand, within EX31_RS07565 at 3.495 kb on + strand, within EX31_RS07565 at 3.496 kb on - strand, within EX31_RS07565 at 3.496 kb on - strand, within EX31_RS07565 at 3.496 kb on - strand, within EX31_RS07565 at 3.496 kb on - strand, within EX31_RS07565 at 3.496 kb on - strand, within EX31_RS07565 at 3.496 kb on - strand, within EX31_RS07565 at 3.496 kb on - strand, within EX31_RS07565 at 3.496 kb on - strand, within EX31_RS07565 at 3.496 kb on - strand, within EX31_RS07565 at 3.553 kb on - strand, within EX31_RS07565 at 3.643 kb on - strand at 3.656 kb on - strand at 3.696 kb on - strand at 3.755 kb on + strand, within EX31_RS07570 at 3.772 kb on + strand, within EX31_RS07570 at 3.772 kb on + strand, within EX31_RS07570 at 3.773 kb on - strand, within EX31_RS07570 at 3.773 kb on - strand, within EX31_RS07570 at 3.788 kb on + strand, within EX31_RS07570 at 3.788 kb on + strand, within EX31_RS07570 at 3.789 kb on - strand, within EX31_RS07570 at 3.824 kb on + strand, within EX31_RS07570 at 3.824 kb on + strand, within EX31_RS07570 at 3.824 kb on + strand, within EX31_RS07570 at 3.824 kb on + strand, within EX31_RS07570 at 3.824 kb on + strand, within EX31_RS07570 at 3.825 kb on - strand, within EX31_RS07570 at 3.825 kb on - strand, within EX31_RS07570 at 3.825 kb on - strand, within EX31_RS07570 at 3.825 kb on - strand, within EX31_RS07570 at 3.827 kb on + strand, within EX31_RS07570 at 3.828 kb on - strand, within EX31_RS07570 at 3.828 kb on - strand, within EX31_RS07570 at 3.828 kb on - strand, within EX31_RS07570 at 3.874 kb on + strand, within EX31_RS07570 at 3.874 kb on + strand, within EX31_RS07570 at 3.874 kb on + strand, within EX31_RS07570 at 3.874 kb on + strand, within EX31_RS07570 at 3.874 kb on + strand, within EX31_RS07570 at 3.902 kb on + strand, within EX31_RS07570 at 3.903 kb on - strand, within EX31_RS07570 at 3.903 kb on - strand, within EX31_RS07570 at 3.903 kb on - strand, within EX31_RS07570 at 3.914 kb on + strand, within EX31_RS07570 at 3.914 kb on + strand, within EX31_RS07570 at 3.914 kb on + strand, within EX31_RS07570 at 3.915 kb on - strand, within EX31_RS07570 at 3.915 kb on - strand, within EX31_RS07570 at 3.935 kb on + strand, within EX31_RS07570 at 3.968 kb on + strand, within EX31_RS07570 at 3.968 kb on + strand, within EX31_RS07570 at 3.969 kb on - strand, within EX31_RS07570 at 3.969 kb on - strand, within EX31_RS07570 at 3.969 kb on - strand, within EX31_RS07570 at 3.997 kb on + strand, within EX31_RS07570 at 4.037 kb on + strand, within EX31_RS07570 at 4.038 kb on - strand, within EX31_RS07570 at 4.043 kb on + strand, within EX31_RS07570 at 4.043 kb on + strand, within EX31_RS07570 at 4.043 kb on + strand, within EX31_RS07570 at 4.044 kb on - strand, within EX31_RS07570 at 4.044 kb on - strand, within EX31_RS07570 at 4.044 kb on - strand, within EX31_RS07570 at 4.100 kb on + strand, within EX31_RS07570 at 4.100 kb on + strand, within EX31_RS07570 at 4.101 kb on - strand, within EX31_RS07570 at 4.101 kb on - strand, within EX31_RS07570 at 4.120 kb on + strand, within EX31_RS07570 at 4.208 kb on + strand, within EX31_RS07570 at 4.208 kb on + strand, within EX31_RS07570 at 4.215 kb on - strand, within EX31_RS07570 at 4.245 kb on + strand, within EX31_RS07570 at 4.245 kb on + strand, within EX31_RS07570 at 4.253 kb on + strand, within EX31_RS07570 at 4.253 kb on + strand, within EX31_RS07570 at 4.253 kb on + strand, within EX31_RS07570 at 4.253 kb on + strand, within EX31_RS07570 at 4.254 kb on - strand, within EX31_RS07570 at 4.254 kb on - strand, within EX31_RS07570 at 4.267 kb on + strand, within EX31_RS07570 at 4.267 kb on + strand, within EX31_RS07570 at 4.268 kb on - strand, within EX31_RS07570 at 4.268 kb on - strand, within EX31_RS07570 at 4.268 kb on - strand, within EX31_RS07570 at 4.341 kb on - strand, within EX31_RS07570 at 4.350 kb on + strand, within EX31_RS07570 at 4.356 kb on - strand, within EX31_RS07570 at 4.356 kb on - strand, within EX31_RS07570 at 4.356 kb on - strand, within EX31_RS07570 at 4.361 kb on + strand, within EX31_RS07570 at 4.361 kb on + strand, within EX31_RS07570 at 4.361 kb on + strand, within EX31_RS07570 at 4.361 kb on + strand, within EX31_RS07570 at 4.362 kb on - strand, within EX31_RS07570 at 4.369 kb on + strand, within EX31_RS07570 at 4.369 kb on + strand, within EX31_RS07570 at 4.370 kb on - strand, within EX31_RS07570 at 4.370 kb on - strand, within EX31_RS07570 at 4.376 kb on + strand, within EX31_RS07570 at 4.377 kb on - strand, within EX31_RS07570 at 4.380 kb on + strand, within EX31_RS07570 at 4.380 kb on + strand, within EX31_RS07570 at 4.380 kb on + strand, within EX31_RS07570 at 4.381 kb on - strand, within EX31_RS07570 at 4.381 kb on - strand, within EX31_RS07570 at 4.381 kb on - strand, within EX31_RS07570 at 4.381 kb on - strand, within EX31_RS07570 at 4.381 kb on - strand, within EX31_RS07570 at 4.381 kb on - strand, within EX31_RS07570 at 4.389 kb on - strand, within EX31_RS07570 at 4.524 kb on + strand, within EX31_RS07570 at 4.524 kb on + strand, within EX31_RS07570 at 4.540 kb on + strand at 4.541 kb on - strand at 4.572 kb on + strand at 4.617 kb on + strand at 4.617 kb on + strand at 4.617 kb on + strand at 4.617 kb on + strand at 4.618 kb on - strand at 4.618 kb on - strand at 4.618 kb on - strand at 4.618 kb on - strand at 4.618 kb on - strand at 4.618 kb on - strand at 4.631 kb on + strand at 4.631 kb on + strand at 4.681 kb on + strand at 4.681 kb on + strand at 4.681 kb on + strand at 4.682 kb on - strand at 4.682 kb on - strand at 4.689 kb on + strand at 4.689 kb on + strand at 4.689 kb on + strand at 4.689 kb on + strand at 4.689 kb on + strand at 4.689 kb on + strand at 4.689 kb on + strand at 4.689 kb on + strand at 4.689 kb on + strand at 4.694 kb on + strand at 4.694 kb on + strand at 4.694 kb on + strand at 4.694 kb on + strand at 4.694 kb on + strand at 4.716 kb on + strand at 4.736 kb on + strand at 5.457 kb on + strand at 5.472 kb on + strand at 5.472 kb on + strand at 5.494 kb on + strand at 5.494 kb on + strand at 5.494 kb on + strand at 5.494 kb on + strand at 5.500 kb on + strand at 5.500 kb on + strand at 5.500 kb on + strand at 5.501 kb on - strand at 5.501 kb on - strand at 5.560 kb on + strand at 5.561 kb on - strand at 5.585 kb on - strand at 5.585 kb on - strand at 5.598 kb on + strand at 5.598 kb on + strand at 5.599 kb on - strand at 5.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 2,670 - +0.4 2,670 - +0.1 2,702 + +0.2 2,702 + -2.0 2,702 + -0.0 2,702 + -0.2 2,703 - -0.1 2,768 + -0.1 2,769 - -0.4 2,786 + -0.8 2,787 - +0.1 2,787 - -1.5 2,787 - +0.2 2,787 - +0.6 2,787 - -0.1 2,824 + -0.5 2,824 + +0.1 2,824 + +0.9 2,825 - -0.3 2,825 - -0.1 2,825 - +1.2 2,855 + +0.4 2,856 - -0.3 2,866 + -0.0 2,866 + +0.6 2,866 + +0.3 2,866 + -0.1 2,866 + +0.3 2,866 + -0.5 2,866 + +0.8 2,867 - +0.9 2,867 - -0.1 2,867 - +0.3 2,867 - +0.2 2,867 - +0.0 2,867 - +0.1 2,867 - -0.1 2,867 - -0.5 2,868 + +0.4 2,868 + +0.6 2,869 - +0.5 2,869 - -0.4 2,886 + +0.1 2,886 + +0.9 2,886 + -0.1 2,918 + +0.8 2,918 + +0.1 2,918 + +0.3 2,918 + -0.0 2,918 + +0.2 2,918 + -0.1 2,918 + -0.5 2,918 + -0.5 2,918 + +0.8 2,919 - -0.2 2,919 - +0.3 2,919 - +0.2 2,919 - -0.4 2,919 - +0.3 2,920 + +0.5 2,921 - +0.5 2,921 - +0.6 2,921 - -1.8 2,953 - +0.5 2,975 + +0.3 2,976 - +0.3 3,005 + EX31_RS07565 0.12 -0.7 3,005 + EX31_RS07565 0.12 +0.1 3,017 + EX31_RS07565 0.14 +0.3 3,017 + EX31_RS07565 0.14 -0.6 3,018 - EX31_RS07565 0.14 -0.1 3,066 - EX31_RS07565 0.20 -0.0 3,066 - EX31_RS07565 0.20 +0.1 3,066 - EX31_RS07565 0.20 -0.1 3,133 - EX31_RS07565 0.29 +0.5 3,238 - EX31_RS07565 0.43 -0.5 3,326 - EX31_RS07565 0.55 +0.6 3,374 + EX31_RS07565 0.62 -0.1 3,374 + EX31_RS07565 0.62 +0.4 3,403 - EX31_RS07565 0.66 +0.5 3,493 + EX31_RS07565 0.78 -0.6 3,493 + EX31_RS07565 0.78 +0.4 3,493 + EX31_RS07565 0.78 -1.6 3,494 - EX31_RS07565 0.78 -0.2 3,495 + EX31_RS07565 0.78 +0.0 3,495 + EX31_RS07565 0.78 +0.1 3,495 + EX31_RS07565 0.78 -0.4 3,495 + EX31_RS07565 0.78 +0.1 3,495 + EX31_RS07565 0.78 -0.0 3,495 + EX31_RS07565 0.78 -0.0 3,496 - EX31_RS07565 0.78 -0.2 3,496 - EX31_RS07565 0.78 +0.6 3,496 - EX31_RS07565 0.78 -1.0 3,496 - EX31_RS07565 0.78 -1.6 3,496 - EX31_RS07565 0.78 -0.8 3,496 - EX31_RS07565 0.78 -0.5 3,496 - EX31_RS07565 0.78 -0.2 3,496 - EX31_RS07565 0.78 -0.3 3,496 - EX31_RS07565 0.78 -0.4 3,553 - EX31_RS07565 0.86 -0.0 3,643 - +0.7 3,656 - +0.3 3,696 - -0.1 3,755 + EX31_RS07570 0.10 -0.0 3,772 + EX31_RS07570 0.12 +0.3 3,772 + EX31_RS07570 0.12 +1.1 3,773 - EX31_RS07570 0.12 +0.5 3,773 - EX31_RS07570 0.12 +0.5 3,788 + EX31_RS07570 0.14 +0.6 3,788 + EX31_RS07570 0.14 -0.4 3,789 - EX31_RS07570 0.14 +0.6 3,824 + EX31_RS07570 0.17 -0.6 3,824 + EX31_RS07570 0.17 +0.7 3,824 + EX31_RS07570 0.17 +0.3 3,824 + EX31_RS07570 0.17 +1.0 3,824 + EX31_RS07570 0.17 +0.9 3,825 - EX31_RS07570 0.17 +0.5 3,825 - EX31_RS07570 0.17 +0.5 3,825 - EX31_RS07570 0.17 -0.4 3,825 - EX31_RS07570 0.17 +0.5 3,827 + EX31_RS07570 0.18 -0.3 3,828 - EX31_RS07570 0.18 +0.3 3,828 - EX31_RS07570 0.18 +0.0 3,828 - EX31_RS07570 0.18 +0.5 3,874 + EX31_RS07570 0.22 +0.4 3,874 + EX31_RS07570 0.22 +0.3 3,874 + EX31_RS07570 0.22 +0.0 3,874 + EX31_RS07570 0.22 +0.8 3,874 + EX31_RS07570 0.22 +0.1 3,902 + EX31_RS07570 0.25 +0.9 3,903 - EX31_RS07570 0.25 +0.6 3,903 - EX31_RS07570 0.25 +0.2 3,903 - EX31_RS07570 0.25 +0.8 3,914 + EX31_RS07570 0.27 +0.5 3,914 + EX31_RS07570 0.27 +0.4 3,914 + EX31_RS07570 0.27 +0.8 3,915 - EX31_RS07570 0.27 +1.1 3,915 - EX31_RS07570 0.27 -0.0 3,935 + EX31_RS07570 0.29 -0.3 3,968 + EX31_RS07570 0.32 -0.1 3,968 + EX31_RS07570 0.32 +0.2 3,969 - EX31_RS07570 0.32 +0.9 3,969 - EX31_RS07570 0.32 +0.9 3,969 - EX31_RS07570 0.32 +0.2 3,997 + EX31_RS07570 0.35 +3.2 4,037 + EX31_RS07570 0.39 +0.5 4,038 - EX31_RS07570 0.39 +0.4 4,043 + EX31_RS07570 0.40 +1.4 4,043 + EX31_RS07570 0.40 +1.6 4,043 + EX31_RS07570 0.40 +0.9 4,044 - EX31_RS07570 0.40 -0.9 4,044 - EX31_RS07570 0.40 -0.2 4,044 - EX31_RS07570 0.40 -0.4 4,100 + EX31_RS07570 0.46 -0.2 4,100 + EX31_RS07570 0.46 +0.1 4,101 - EX31_RS07570 0.46 -0.0 4,101 - EX31_RS07570 0.46 +0.6 4,120 + EX31_RS07570 0.48 +0.6 4,208 + EX31_RS07570 0.57 +0.9 4,208 + EX31_RS07570 0.57 +0.4 4,215 - EX31_RS07570 0.57 -0.9 4,245 + EX31_RS07570 0.60 +1.0 4,245 + EX31_RS07570 0.60 +1.7 4,253 + EX31_RS07570 0.61 -0.0 4,253 + EX31_RS07570 0.61 +0.4 4,253 + EX31_RS07570 0.61 +2.5 4,253 + EX31_RS07570 0.61 -0.4 4,254 - EX31_RS07570 0.61 +0.4 4,254 - EX31_RS07570 0.61 +0.2 4,267 + EX31_RS07570 0.63 +0.5 4,267 + EX31_RS07570 0.63 -1.0 4,268 - EX31_RS07570 0.63 +0.9 4,268 - EX31_RS07570 0.63 -0.2 4,268 - EX31_RS07570 0.63 +1.0 4,341 - EX31_RS07570 0.70 +0.6 4,350 + EX31_RS07570 0.71 -0.7 4,356 - EX31_RS07570 0.72 -0.4 4,356 - EX31_RS07570 0.72 +0.8 4,356 - EX31_RS07570 0.72 -0.4 4,361 + EX31_RS07570 0.72 +0.6 4,361 + EX31_RS07570 0.72 -0.2 4,361 + EX31_RS07570 0.72 +0.3 4,361 + EX31_RS07570 0.72 +0.3 4,362 - EX31_RS07570 0.72 +0.7 4,369 + EX31_RS07570 0.73 +0.4 4,369 + EX31_RS07570 0.73 -1.1 4,370 - EX31_RS07570 0.73 +1.6 4,370 - EX31_RS07570 0.73 +0.8 4,376 + EX31_RS07570 0.74 +0.2 4,377 - EX31_RS07570 0.74 +0.9 4,380 + EX31_RS07570 0.74 -1.1 4,380 + EX31_RS07570 0.74 +1.1 4,380 + EX31_RS07570 0.74 +0.7 4,381 - EX31_RS07570 0.74 +0.4 4,381 - EX31_RS07570 0.74 +0.2 4,381 - EX31_RS07570 0.74 +0.8 4,381 - EX31_RS07570 0.74 +1.1 4,381 - EX31_RS07570 0.74 +0.0 4,381 - EX31_RS07570 0.74 +1.5 4,389 - EX31_RS07570 0.75 +0.2 4,524 + EX31_RS07570 0.89 +0.2 4,524 + EX31_RS07570 0.89 -0.0 4,540 + +0.8 4,541 - +1.2 4,572 + +0.5 4,617 + +0.6 4,617 + +0.4 4,617 + +0.8 4,617 + -0.1 4,618 - +0.7 4,618 - -0.1 4,618 - +0.4 4,618 - +0.1 4,618 - -0.2 4,618 - +1.9 4,631 + -0.1 4,631 + +1.3 4,681 + +0.2 4,681 + +1.2 4,681 + +0.5 4,682 - -0.2 4,682 - -0.1 4,689 + -1.0 4,689 + +1.2 4,689 + +0.1 4,689 + +0.4 4,689 + -0.8 4,689 + -0.1 4,689 + +0.2 4,689 + +0.7 4,689 + +0.1 4,694 + -0.1 4,694 + +1.1 4,694 + +1.0 4,694 + +0.7 4,694 + -0.3 4,716 + +0.5 4,736 + +0.3 5,457 + +0.5 5,472 + +0.3 5,472 + +0.4 5,494 + +0.0 5,494 + -0.6 5,494 + +0.6 5,494 + +0.7 5,500 + -0.2 5,500 + +0.2 5,500 + +0.9 5,501 - +1.6 5,501 - +0.4 5,560 + -0.2 5,561 - +0.1 5,585 - +0.3 5,585 - -1.2 5,598 + -0.2 5,598 + -0.9 5,599 - +0.4 5,599 - +0.1
Or see this region's nucleotide sequence